AMCG00005596


Basic Information

Item Value
gene id AMCG00005596
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 5776514 ~ 5784334 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005596
GCTCTGTCTCAGCGCTTTCTAGTGAGGTACGGGTCAGGCGTGTGCAACATGAACAGGGGACCGGCTATTCCTGTTGTGTATGACTTTGGGAACAAGCAGTCTACCACACAGTTGTATGGCCCAAGTGTTCAAGgaggaggatatTTCCCGCAAGGTGATGGAAGACAGTTTGGCGATTTCTCAGGATTTGACTGGGATGGCTCTGTAACGCATTACTgtgtgggaggaggaggatatTTCCCGCAAGGTGAAGGAAGACAGTGTGGCGATTTCTCAGGATTTGACTGGGATGGCTATGGAACACATGTAGGAGCAAGTGCATCCAGAGAAATGACCCAGTCTGCTATGCTGCTGTTTTACCGCTGA

Function

GO: NA

KEGG:

id description
ko04614 Renin-angiotensin system
ko04976 Bile secretion
ko04974 Protein digestion and absorption

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005596 True 366 mRNA 0.50 3 5776514 5784334

Neighbor

gene id symbol gene type direction distance location
AMCG00005604 NA coding upstream 4455 5752537 ~ 5772059 (+)
AMCG00005602 NA coding upstream 28678 5745457 ~ 5747836 (+)
AMCG00005603 dhx33 coding upstream 31693 5737790 ~ 5744821 (+)
AMCG00005589 NA coding upstream 109646 5648461 ~ 5666868 (+)
AMCG00005590 atp2a3,LOC102312511 coding upstream 136578 5626706 ~ 5639936 (+)
AMCG00005595 NA coding downstream 760 5785094 ~ 5802056 (+)
AMCG00005594 NA coding downstream 61261 5845595 ~ 5846484 (+)
AMCG00005607 NA coding downstream 84006 5868340 ~ 5882291 (+)
AMCG00005609 NA coding downstream 107419 5891753 ~ 5896304 (+)
AMCG00005608 NA coding downstream 117157 5901491 ~ 5904639 (+)
G153154 LOC106602867,LOC107597455 non-coding upstream 331257 5444379 ~ 5445257 (+)
G153118 LOC106602865,LOC108260233,LOC108429749,LOC105010822,LOC103035912,LOC105896079 non-coding upstream 452591 5321060 ~ 5323923 (+)
G153113 NA non-coding upstream 467423 5307945 ~ 5309091 (+)
G153082 NA non-coding upstream 574979 5195788 ~ 5201535 (+)
G153080 NA non-coding upstream 585718 5190527 ~ 5190796 (+)
G153271 NA non-coding downstream 16314 5800648 ~ 5800892 (+)
G153274 NA non-coding downstream 132501 5916835 ~ 5955451 (+)
G153312 NA non-coding downstream 263796 6048130 ~ 6048438 (+)
G153348 LOC107090330,LOC102220786 non-coding downstream 447825 6232159 ~ 6234047 (+)
G153381 NA non-coding downstream 498654 6282988 ~ 6331371 (+)
AMCG00005583 LOC106603777,LOC105895333,LOC108428505 other upstream 534738 5214813 ~ 5241776 (+)
AMCG00005546 acaca,LOC107691719 other upstream 1213494 4560213 ~ 4563020 (+)
AMCG00005538 NA other upstream 1471358 4282517 ~ 4305156 (+)
AMCG00005498 lyrm9,LOC102789908 other upstream 2505670 3266374 ~ 3270844 (+)
G152588 rpl23a other upstream 2926906 2845217 ~ 2849608 (+)
AMCG00005647 NA other downstream 650187 6434521 ~ 6437078 (+)
AMCG00005667 NA other downstream 703384 6487718 ~ 6488782 (+)
AMCG00005663 NA other downstream 824309 6608643 ~ 6662480 (+)
G153675 NA other downstream 1476343 7260677 ~ 7265971 (+)
AMCG00005694 NA other downstream 1522724 7307058 ~ 7334571 (+)

Expression


Co-expression Network