AMCG00005598 (hpda,LOC108413266,LOC108260398)


Basic Information

Item Value
gene id AMCG00005598
gene name hpda,LOC108413266,LOC108260398
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 6158725 ~ 6170298 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005598
CCAGAATGTATATttcgagagagagacagagatatgGGAAAAAAATTAGCTCCTGCATGTAAGGCACAACCAGTCAAAGGAACGCAACGTGGAGACTGCTGAGAGgatctttttttagttttgaacaAAAGACAGGAGGAAGGGGTGGATTtgattgcaataaaaaaaaaaagttagtgcAGAGTCAACCCAAAGGACGATTTCAACTCAAAGATGAATTGACGATCATAGAACATGAGCAGAAGCTGAGACAGATGTACAGAGGTGTGAAAACAGCTGTTCAGATGCAGGTAATAAGAACACTGTATCAAACCCTCCAATGCTCATCATTCTTAGTTCTGCACTCAATCATCCCCATTAACTCAGAGGTCAGACGAACGAACACCTGGAAATATAGAGGTGCTTTGTAAAGCGGTGAAAAAGGGCACCACAAGTctagaaaaccaaaaaataatacataacaaaattCCTCGAGTTATCCACTGCAAAAGGGAAAACCTGGCCTGTGAGCGCTTTCCCCAGGACTGTTCTAGAGGATTCGACAATCGATAACCCTGGGAGAGTGTGGGTCAGGGCTCCCCATGGGCCTCCGAGGCAGAGGTGGGAGGTGGTGTCTTCAAAGGGACCAATCAGCAGAGTCTCTCTCAGTACTTATCTGCCAGGGTCCCAACGCGGTGGACCTGCTTGGTATCTCTCCGTCCGCCTGCAATCATAGGAACCACAATGACCTCCTATACCGACAAAGGAGAAAAGCCTGAGAGGGGCCGATTTTTGAAATTCCACCATGTCACCTTCTGGGTGGGGAATGCCAAACAGGCCGCAGTCTTTTACTGCGACAAGATGGGCTTTCAGCCCCTCGCCTACAAGGGTCTGGAGACGGGAAGCAGAGAGGTGGTGTCCCACGTCATCCGGCAGGACAAGCTTTACAATATCCTCCTGCTGGTCCTCATTTACATAGATGTTCACATTCTCCTGATGTCACTGTCTGCCATTTTCCGTGATGACTTCTCCACCAAACGCAGTCATCTCGAGACTGCAGAAATGGGAGAGCACTTGATAAAGCACGGTGATGCTGTGAAGGACATAGCGTTTCAGGTGGAAGACTGTGACTTCCTAGTGAAGAAAGCCAGAGAGCGAGGAGCCGTGATTGTCAAGGAACCCTGGATTGAGCAGGACGCCAACGGGAAAGTGAAATTTGCTATTGTTCAAACATATGGAGACACGACACACACATTTGTGGAGTACCTTGTGCCCTACAAAGGACTGTTTCTGCCCGGATATGAAGAGCCCCTCTTCAAAGACCCGTTGCTGCCCCAGCTGCCACCAGGTTGTCTGAACTTCATTGATCACATTGTGGGAAACCAGCCAGACGACGATATGGTGCCAATATCAGACTGGTACCAGAAGTGTCTGATGTTCCACCGTTTCTGGTCGATCGACGACAAACAGATCCACACGCAGTACAGCGCCCTGAGGTCCATCGTGGTCACCAATTACGAGGAGACAATCAAGATGCCCATTAATGAGCCAGCTCCTGGGAAGAAGAAATCTCAGATCCAGGAGTACGTTGATTACAACGGAGGACCTGGCGTCCAACACATTGCTCTCAACACTTCCAACATCATCCAGGCTATTATCAATCTGAAGGCACGTGGACTGGAGTTCCTCTCCGCCCCAGACTCCTACTATGTCAGCCTTCGGGAGAAGCTGAAAACGGCCAAAATCAAAGTGAAGGAAGACCTAACAAAACTGCAGGAACTTAAAATCTTGGTGGACTTCGATGACAAGGGATACCTTCTCCAGATTTTCACCAAGCCAGTCCAGGACAGACCCACACTCTTCCTGGAGGTCATTCAAAGACACAATCACTTCGGTTTCGGAGCCGGGAATTTCAAATCTCTGTTCGAGGCCATAGAGAAGGACCAGGAAGCCCGCGGGAACCTGACCGCCCTGACTCCTGACGGGCAGCCCAAGGTTTTTTATTAACCAACAACAAAGACCACGACAGTGACGGCTacgataacaacaacaataaaaacaaatatatctaaATCTCTGCCGAAATTGTTGATGTCCAAATATCAGTcattttataattcatatatatttttaagtccCTTGTATCAACAgccttaatttaaatattgtattcaccTTCAATCGAGTCTCAATATACCAGCAGTTGTCAAGTGACTAGCTCTTAGAATCGCACCAGATTTATTGAAGCATTAGTTGTCCATTTTGAGAAGTTCCCCCGATCATCATCAGAGCATTTTCTTAAAAGGTCCTGCATCCCAATTTGATTCATTTACACAAGACTTACAGACGTGGATCCAGAATGTTTTGGTTTGAAGAACTGTGATGACCTAATATGTACTGAAGAGGTGAAGAAGTCTACCTGAAAGCCTAATGAGAAAGACTTCATAAACCATAAGCTTCATGCAAAAGATGTGATACGAATATATAagagcagaaaataaacaacataaaactAAACTCTCAAAATCTGAACTTTGAGAGAGGGGAATGATGTGAAATGTCTGGGATGGGCCTGTTTTATGGCTGGAAAATAAGCTGCAGACTCCTTCAAAACAGGAAACCGAAAACGGGTAGAGAGGGACTATATGGTAAGTGAGTTACCATCCCTACAACGAAGGAGATGAAAATCAGTTTGCCCCGGGTTACCTGTGAGCTGAGAACGACACACGTtagaaagaacacaaacacgGTCAGagatattatttcaaaataatttatttatatataattggaaTGGAGCCAGGTCTTTACTTCTGTGATGACactgatcatatatatatatatata

Function

symbol description
hpda Predicted to enable 4-hydroxyphenylpyruvate dioxygenase activity. Predicted to be involved in tyrosine catabolic process. Predicted to act upstream of or within L-phenylalanine catabolic process. Predicted to be active in Golgi membrane and endoplasmic reticulum membrane. Is expressed in liver. Human ortholog(s) of this gene implicated in hawkinsinuria and tyrosinemia type III. Orthologous to human HPD (4-hydroxyphenylpyruvate dioxygenase).

NR:

description
PREDICTED: 4-hydroxyphenylpyruvate dioxygenase

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0006559 L-phenylalanine catabolic process biological_process
GO:0006572 tyrosine catabolic process biological_process
GO:0003868 4-hydroxyphenylpyruvate dioxygenase activity molecular_function
GO:0004462 lactoylglutathione lyase activity molecular_function
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K00457 HPD, hppD; 4-hydroxyphenylpyruvate dioxygenase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005598 True 2826 mRNA 0.45 14 6158725 6170298

Neighbor

gene id symbol gene type direction distance location
AMCG00005601 supt4h1 coding downstream 86059 6070192 ~ 6072666 (-)
AMCG00005611 NA coding downstream 211408 5936815 ~ 5947317 (-)
AMCG00005610 LOC101160255,LOC103021402,LOC100700540,LOC105025792 coding downstream 227569 5920200 ~ 5931156 (-)
AMCG00005605 NA coding downstream 407287 5748776 ~ 5751438 (-)
AMCG00005606 NA coding downstream 449270 5666860 ~ 5709455 (-)
AMCG00005629 NA coding upstream 76852 6247150 ~ 6255757 (-)
AMCG00005638 NA coding upstream 118171 6288469 ~ 6296947 (-)
AMCG00005642 NA coding upstream 135535 6305833 ~ 6309531 (-)
AMCG00005640 NA coding upstream 139258 6309556 ~ 6317063 (-)
AMCG00005639 NA coding upstream 155898 6326196 ~ 6328995 (-)
G153324 NA non-coding downstream 89711 6068787 ~ 6069014 (-)
G153313 NA non-coding downstream 110255 6048130 ~ 6048470 (-)
G153272 NA non-coding downstream 357819 5800648 ~ 5800906 (-)
G153248 dhx33 non-coding downstream 410153 5741492 ~ 5748572 (-)
G153236 NA non-coding downstream 510016 5648358 ~ 5648709 (-)
G153373 NA non-coding upstream 63830 6234128 ~ 6234359 (-)
G153374 NA non-coding upstream 64250 6234548 ~ 6234858 (-)
G153375 NA non-coding upstream 64885 6235183 ~ 6235409 (-)
G153379 NA non-coding upstream 70104 6240402 ~ 6257172 (-)
G153487 NA non-coding upstream 390641 6560939 ~ 6563570 (-)
G153342 NA other downstream 75859 6081235 ~ 6082866 (-)
G153130 NA other downstream 856527 5300769 ~ 5302198 (-)
AMCG00005539 NA other downstream 1865854 4284717 ~ 4292871 (-)
AMCG00005560 LOC106568075,LOC104946632,LOC106603282 other downstream 2289516 3850136 ~ 3869209 (-)
AMCG00005525 LOC106567758 other downstream 2526013 3606961 ~ 3632712 (-)
AMCG00005628 LOC107090330,LOC102220786 other upstream 61861 6232159 ~ 6234028 (-)
AMCG00005674 NA other upstream 319957 6490255 ~ 6496571 (-)
AMCG00005685 NA other upstream 938920 7109218 ~ 7145807 (-)
G153733 auts2 other upstream 1615256 7785554 ~ 7788321 (-)
AMCG00005704 NA other upstream 1829038 7999336 ~ 8001405 (-)

Expression


Co-expression Network