AMCG00005606


Basic Information

Item Value
gene id AMCG00005606
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 5666860 ~ 5709455 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005606
AGGTTCCCGATTGCAGTGAAGGAGCACGGGAGCAGGGAACCACAGTAGGCCTGGCTCAGTGGAGTCCGTTCTGATCCAAGGAATAATTTGGTCCACAAAAGGTTCATGTGAGAACAGAGGAACCGCGCTAGCTTTCTACCACCACTACTGCCCACACCCCATCGAATCTGGCATGTCCTTCAGCCTCGACGCCGATCCGCAGGAGATGGAGTCTGAGCACCAGACTGAACTGGCCGACAGGGTGGCGGCCATCAACGTGACCACGGATAAGGCGCCCCCACCAAATGGGAGGAGGGTGAACGGCATGAACAACGGCGCCCAGGGCGGAGTCTCGGACCCTTCTGTCGCCAGGAAAGCCCCCCAGCGGCCCGTCCTGTCCAACAGGAAGCTGTCGCTGCAGGAGCGTTCATCTGGGAACTATGCCCCCTACGCGACCGGGAACTCTACCCACATCTCCCCTCGAGTGGCCCGCCGGCCCACCATCGAGTCCAAGCGTGTCTCAATATCTGACTCCCagGGCTCGTACGGAGTGGTGAAATTAGCGTACAACGAGGATGACGACAAATATTACGCAATGAAAGTAGTCTCCAAGAAGAAGCTGATGAAGCAATATGGATTTCCACGTCGTCCTCCACCCCGTGGAGCAAAAGCCGTGCAAGGGGACCAGCCAAAAACCCTGGGGCCTCTGGAGAGGGTGTATCAGGAAATCGCCATCCTGAAGAAACTGGACCATGTCAACATCGTCAAACTGGTGGAGGTGCTTGATGACCCTTCTGAAGACAACCTTCATATGGCATTTGAGCTCATGAGAAAAGGCCAAGTGATGGAGGTACCGACGGACAGCCCTTTCACCGAGGAGCAGTCGAGGATCTACTTCAGGGACATAGTCTTGGGCATCGAGTACCTGCACTACCAGAAGATTGTCCACAGGGATATCAAGCCCTCCAACCTGCTTCTCGGAGACGACGGGCATGTGAAAATTGCCGACTTTGGCGTCAGTAACCAGTTTGAGGGGAACGATGCTCTGCTTTCAAGTACTGCGGGGACCCCGGCCTTCATGGCTCCGGAGACCTTGGCTGATCATCACAAGAGCTTCAGTGGGAAGTGCCCTTTTATAGACGAATACATCCTGGCTTTGCACAATAAGATCAGGAACAAAAACGTGGAGTTCCCAGAAACACCGGCTATCAGCGAAGACCTGAAAGACCTCATTCTGAAAATGCTGGACAAAAACCCAGACTCCCGGATTACCATTCCTGAAGTGAAGCTGCACCCGTGGGTGACCAAGGACGGCTCCGAGCCCCTGCCCCTGGAGGAGGAGCACTGCACCGTGGTGGAGGTGACCGAGGAGGAGGTGAAGAACTCCGTGAAACTCATCCCCAGCCTGTCTGCCGTGATTTTGGTCAAAGCGATGCTGAGGAAGAGGTCGTTCGGGAACCCATTTGAGTGCCATACCAGGAGAGAAGAGAGGTCCATGTCTGCCCCTGGGAACCTCCTCATGAAGGGCAGCAGTGGCGACGGGAGTCGGGAGGCGGAACTCTCCGACGTGCACGAAGACGATCAATCCTCCTGAACGTCCTGCAGGTCCTGCCTTAGACTGGGGCTACTCCTTGACTCCCTCCATCTTTCTTCTCCCCACCCTACCTCTTCATTCATCCTCCTGTCAGCTCCAGTCGCGGAGAAACGTCCACATTTCTCCACTCGGGGGGGGG

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K00908 CAMKK1; calcium/calmodulin-dependent protein kinase kinase 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005606 True 1712 mRNA 0.56 14 5666860 5709455

Neighbor

gene id symbol gene type direction distance location
AMCG00005625 NA coding downstream 153466 5508252 ~ 5513394 (-)
AMCG00005575 NA coding downstream 199024 5460919 ~ 5467836 (-)
AMCG00005576 LOC106602867,LOC107597455 coding downstream 222250 5444161 ~ 5444610 (-)
AMCG00005574 LOC106602867 coding downstream 260961 5372461 ~ 5405899 (-)
AMCG00005616 NA coding downstream 318592 5344509 ~ 5348268 (-)
AMCG00005605 NA coding upstream 39321 5748776 ~ 5751438 (-)
AMCG00005610 LOC101160255,LOC103021402,LOC100700540,LOC105025792 coding upstream 210745 5920200 ~ 5931156 (-)
AMCG00005611 NA coding upstream 227360 5936815 ~ 5947317 (-)
AMCG00005601 supt4h1 coding upstream 360737 6070192 ~ 6072666 (-)
AMCG00005598 hpda,LOC108413266,LOC108260398 coding upstream 449270 6158725 ~ 6170298 (-)
G153236 NA non-coding downstream 18151 5648358 ~ 5648709 (-)
G153178 NA non-coding downstream 177261 5487309 ~ 5489599 (-)
G153143 NA non-coding downstream 311163 5353353 ~ 5355697 (-)
G153141 ruvbl2,LOC107664527,LOC107597476,LOC107677411,LOC107587476,LOC107722783 non-coding downstream 314515 5351353 ~ 5352345 (-)
G152942 NA non-coding downstream 1135128 4531440 ~ 4531732 (-)
G153248 dhx33 non-coding upstream 32037 5741492 ~ 5748572 (-)
G153272 NA non-coding upstream 91193 5800648 ~ 5800906 (-)
G153313 NA non-coding upstream 338675 6048130 ~ 6048470 (-)
G153324 NA non-coding upstream 359332 6068787 ~ 6069014 (-)
G153373 NA non-coding upstream 524673 6234128 ~ 6234359 (-)
G153130 NA other downstream 364662 5300769 ~ 5302198 (-)
AMCG00005539 NA other downstream 1373989 4284717 ~ 4292871 (-)
AMCG00005560 LOC106568075,LOC104946632,LOC106603282 other downstream 1797651 3850136 ~ 3869209 (-)
AMCG00005525 LOC106567758 other downstream 2034148 3606961 ~ 3632712 (-)
G152645 NA other downstream 2576146 3071860 ~ 3090714 (-)
G153342 NA other upstream 371780 6081235 ~ 6082866 (-)
AMCG00005628 LOC107090330,LOC102220786 other upstream 522704 6232159 ~ 6234028 (-)
AMCG00005674 NA other upstream 780800 6490255 ~ 6496571 (-)
AMCG00005685 NA other upstream 1399763 7109218 ~ 7145807 (-)
G153733 auts2 other upstream 2076099 7785554 ~ 7788321 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_030183 camkk1a coding NC_007116.7 CM002889.2 31283576 ~ 31432727 (+)