AMCG00005609


Basic Information

Item Value
gene id AMCG00005609
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 5891753 ~ 5896304 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005609
AAGATTAAACCTACGCCTGCTTCCCCAAGTCTACAGACTTCAGTGTCGCCCGAAAGCAAAGTGCATAAAACGCTCGGCCGGAGCCCCGGGCGGCTGTCCGCCACGTCGGGGGATGAGAGGCCGCAGGGGTGGCGCCGGTCTCGATCGGTCTCCTCCGGTAAACGCAGCAGCCGCCAGAGGGTCCCTGTGATGACGGCGCGCTCGCCTGCACACACGGGCTGCAGCAGCGACTCCGGACAATCCCAGCGCAGTCTGACCCAGAAGAACAAAAGCACACCGCTTAAAAAGTATGTTCcacacactatactgcactttactgtaccacactgcagTCTCACCTGCTGTGCCATCTACTCGACCTTCAGCGCCTCGGTGAACATTGCCCCATCTCACAATGATGTCAGTCACCCCACAGAGGTGTGCTTCACTGAGCTGCCTGTTCTTCTGCAGGAAACTCTGCACAGATATGTCCATATGGTGAAGGGCCCACACGCCTCCCAACGGCACCGCCGCCACCGAGCCGCCGGCCGGCACAGGAGCCCATCAGTGTCGTCCGTCAAGCAGGAGAGGCACGGGCGGCACTCGGGCGGCAGGAAGAAGAGCTCGTCACGCAGCCTGTGCCAGCGGAGCAGCTCCTGGAGCAGCAGTCCCTCGCCCTCCCGCTCCCACTCCCGAGAGCGGCAGAGCAAGGCCAAGTCCCCGCACTCCCGGCAGAACGCCTCCCGGGAGAAGGACAGTGAGGGACGGGCTCATCACACGGACACAGAGAGCCGAACTCGCCGGCGCTCCCGGAGTTACTCCCCCATCAGGAAGAGGCGGAGGGACTCACCCAGCTTCATGGAGCCGAGGAGGATCACGAGAATTCAGCAGGGGCAGCGCACGCAAGCGGCCCATCCCCTACTACAGGCCCAGCCCGTCCTCCCCCAGTTCGCTGAGCAGCTACTCCACCTCcagccggagccggagccgcAGTTACGACAGCTACAGCAGCTACAGCCGCAGCCGAACGCCCAGCCGCAGCAGGAGTCGGTCGAGGAGTCCGAGCCGCAATCACAGCTATTACAGCCGCAGCAGCTCGGAAAGCCCGGGCTTCTGAAGCGGCCCCACGGCGTCGGGATGCCCCCTCTGATCCAACCCCAGCAAGACTTCAGCCCAGAGCAGACCTCTCAGGCTTCTCTCAGAATTTAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005609 True 1188 mRNA 0.63 5 5891753 5896304

Neighbor

gene id symbol gene type direction distance location
AMCG00005607 NA coding upstream 9462 5868340 ~ 5882291 (+)
AMCG00005594 NA coding upstream 45269 5845595 ~ 5846484 (+)
AMCG00005595 NA coding upstream 89697 5785094 ~ 5802056 (+)
AMCG00005596 NA coding upstream 107419 5776514 ~ 5784334 (+)
AMCG00005604 NA coding upstream 119694 5752537 ~ 5772059 (+)
AMCG00005608 NA coding downstream 5187 5901491 ~ 5904639 (+)
AMCG00005600 LOC106603951 coding downstream 108088 6004392 ~ 6045735 (+)
AMCG00005599 NA coding downstream 176922 6073226 ~ 6077726 (+)
AMCG00005597 NA coding downstream 254995 6151299 ~ 6155374 (+)
AMCG00005626 mtmr4 coding downstream 309514 6205818 ~ 6229880 (+)
G153271 NA non-coding upstream 90861 5800648 ~ 5800892 (+)
G153154 LOC106602867,LOC107597455 non-coding upstream 446496 5444379 ~ 5445257 (+)
G153118 LOC106602865,LOC108260233,LOC108429749,LOC105010822,LOC103035912,LOC105896079 non-coding upstream 567830 5321060 ~ 5323923 (+)
G153113 NA non-coding upstream 582662 5307945 ~ 5309091 (+)
G153082 NA non-coding upstream 690218 5195788 ~ 5201535 (+)
G153274 NA non-coding downstream 20531 5916835 ~ 5955451 (+)
G153312 NA non-coding downstream 151826 6048130 ~ 6048438 (+)
G153348 LOC107090330,LOC102220786 non-coding downstream 335855 6232159 ~ 6234047 (+)
G153381 NA non-coding downstream 386684 6282988 ~ 6331371 (+)
G153390 NA non-coding downstream 436948 6333252 ~ 6393728 (+)
AMCG00005583 LOC106603777,LOC105895333,LOC108428505 other upstream 649977 5214813 ~ 5241776 (+)
AMCG00005546 acaca,LOC107691719 other upstream 1328733 4560213 ~ 4563020 (+)
AMCG00005538 NA other upstream 1586597 4282517 ~ 4305156 (+)
AMCG00005498 lyrm9,LOC102789908 other upstream 2620909 3266374 ~ 3270844 (+)
G152588 rpl23a other upstream 3042145 2845217 ~ 2849608 (+)
AMCG00005647 NA other downstream 538217 6434521 ~ 6437078 (+)
AMCG00005667 NA other downstream 591414 6487718 ~ 6488782 (+)
AMCG00005663 NA other downstream 712339 6608643 ~ 6662480 (+)
G153675 NA other downstream 1364373 7260677 ~ 7265971 (+)
AMCG00005694 NA other downstream 1410754 7307058 ~ 7334571 (+)

Expression


Co-expression Network