AMCG00005620


Basic Information

Item Value
gene id AMCG00005620
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 5317898 ~ 5337528 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005620
ATGGAGCGCAGCATCTCGCCGAACAGCTTCTCGGTCTCCTGCAGCGCCCTCTTCGCCGAGCTCTGGTTGAGGAAGGAAAATGGTCACGATGCAGTGAGCCGATCTCACAAGAAGCTGCTGGGGGTGACGCAGACGGGCATCCACCATAAATGCCAGGAGAGGACGAAGGAGCTGGAAGATCTGAAAGCCGCAGTGGATTCTCTCAAGAATTTCAATTCCCTCTCTGCCCCTACCGACGATGGATTCCTACCCAGAGTCACGGTCAACCCAGACTTCTCTTTCGGTGCTGTGAGGAGAGCAGTCTCTGAAATTAAAGACCGCCTGGAGGAGATCAGCCGGGACGAATTAATGAAGATCTCCAAATCAGtgAATGAAACCCCAGTCTACAATATGGAGAACAGGATCAAAGAAAAACTTGTCAGGGTGAGTGAAGTTTCAATCGACACCGTTCAAGCCCCGGAACCCAAGAGCCGATCTGACTTTCTGAAATACTTCTGTCAGCTGAGAATGGACACCAACACAGCCTACCGAGAGCTGCATCTATCGGACGGGAACAGAAAGGTGACCCGGACCAGAGACATCCAGGCCTATCCGGACCACCCCGAGAGATTCGACAGCTTCGCCCAGGTGCTGTGCCGGGAGGCCCTGAGTGGCAAGCGCTACTACTGGGAAATCGAGTGGAGCGGCGAGTTCTCCACCGGAGTCACGTACAAAGGGATCAGCAGGAAGGGGAAGGGCTCCCTGTGTCTCCTGGGCTACAACGATAAGTCCTGGAGTCTCCTTTGCTCCGAATCAGGTTACTCCGCCTGGCACAACCGGGAGGACAAGCGCATAAACGCGGCCCACTCCCCCCGGATCGGAGTGTACCTGGACCACACTGCTGGCGTCCTGTCCTTCTACAGCATTTCCGAGACCATGACTCTGCTTCACAGGTTCGAGACTAAGTTCACTGAGCCGCTGTACCCTGGGTTCGGGGTTGGGACCTCGGTGAAGATCTGTCAGCTCAAATAAGCCCTCTAGTGGAGGTGTATAGCAGCCTTAAACCCCCTACAATGTCCAGtcttttggtttttggtttgcTCCACTTATTCAGAGCAGCTGTGTATTATTGTGTCCAAGTTAATAGGTTTTCCAAGTCTCTTCTTATTGACTATTATTCCACCTGTAAAACCTGCCCAAGGACGGTGGCTGTATAGGACTAATGTTATCGAGTCCTGCTCTGTGCCTTCTCTCATTACTGTagtatcaatttatttttaaatcagatgtATTCTATCACATTTCATTCAACACAATATTTCCGACAGGCTCAGAGGCACAGAAAGCAAGCGTCTGCACAAATAATTATACCTGCTTACGTCAAAAGTCATTTCATGTATCCCCTCTGTAGTCTTCTTCACCCGATTCATAATCTCTTCCGCTACTCCCAAATTATAATCAAAACTGTgaatctctctgtctgtctatgacCGCCTTGTTTACGCAAAAGACTGGAAatcacatgcacacaaaaaaaaaattgcattatttttttcaatacatttttttaaaataaagtaatggttttattttgattcctTGAACCATTTGCCTATCTTTCTGCAGTTGGTATCTTCCTGTGTGGATGACTTGGTGAACTAAGGTTATACAGTACGGGGACACTCTTTCCACATTCACCACAAGATGGGaggattaaataataaactttgtaggtggaaaagagaaactgcagatcgaatacatttttacagaagTGAATTAACTTTACACACTTAAAATAAGGGCTGTTTCTGAAAACCTGAAGTCACCTTTAGTGTATTGGGTATATACAGACATATAATGACGtcatacattcatatttcaatttaataaaacaaaaaattgacCAACCAAATAAATAGCCACCAGTTTATTTACATGGACAAGATAACGTTgctcatattaaaatgattatctGTTCACATACATCTGTAACTGGAATGCGGTTTAAGGAGACGCAGCGTTCTTAACATTGACACTGTTTACAGGAACCACACCTTGCAGTTGTACACAGACGCGCACattgtgtattaaaaacagaactgcTGTACATTGAACTAAAtcaacatattaataataataatagatatataaatataggggTTAAAAAACTATCAATTATATCACGTTATAAATTCCACTACACTGGATTTGGAAATttcaacatttcagtttttgtatcTAAACACTTGGAGACATTATTCTCTGTTGTACAATGGTGTTAGACAAACCTGAGCTTTCATGCAGGCTGTGGCAGAAACCGTTCAGGTTTTCTGGTATGTTTTGATTAAAGGCACAATCCTATGGAAGACTTCACAACAAGCACATCTACTAAACTGTACCATGttaataactgaaataacattttgaggtggtgtaaattattaaatgactGCAGTGCTCTGAATGAGTTAAGAcctattgtatttataatttgaaaattcTCAGatggtttgtgtattttattggtattgcagtattttgtaaaatgagtTCCAGGGGCCTAAGTCCGTGCAGGCTCAGTATCGCAGATAATATCCTGAACCTGTGAAATGTTATCTGCCGCCTTCCAGGGGtgaaatgcaaagcattattttacattctatAGATTTTCTCTCATTTCGTGGCTCAGCCTGTGCAAAACTGCAATATTAGCTTTCAGGGAATGCCCCTGTTCGCAAATCTCGGATGACAAGTCTGTTATTACTCCTCTTTTTGAACAGCTCATGCACCATCTCTCCACACATCCCTCCTTTAAAGAAAGCACCCTTCGCCAGGGACCAGGAACTCCCTGTGAACCCAGATCCCAGAGAAACCAGTCCCCTCTTTTCCTCTGTGAGCGATCTGAGAATTCCAAACTGACTCAAGCCGTCTCCGCAGTCGGACCACTGTTGCAGTTTCTCTTTCCCCACCAGCGGACCCCTCTCCTCACACAAGGCGTCAATACTAGGATTTCCCCTCTGAGTGGCTCTGTAGGTGGTTCTTCAGGCTAACCCTGTGCGTGAAGCTCTTCTCACACTGGTCACACTTGAACGGCTTCTCCCCAGTGTGAACCCGCAGGTGGGACTTCAGGTTCCCCGGCTGGTTGAAGCTCCGGTCGCACAGGTGGCACTGGTAGGGCTTCTCCCCCTTGTGGATGTTCTCGTGCCGGCGCAGGTGTTGCAGGAGACTGAAGCTCTTCCCGCAGTAGCTGCAGATGTGGGGCTTCTCCCCCGTGTGCAGCTGCAGGTGGGTCCTCAGGCTCTGCTTCTCGGTGAATTTGTTGCCGCACTGGTGGCACTGGTAGGGCTTCTCCCCGGAGTGAGACCGCAGGTGCTTGACCATGCTCTCCGAGCGGTTGAAGGCTTTCAAGCACACCTTGCAGGTGTACGGCTTCTCCCCAGTGTGTGTCCGCTGGTGGCGCTTCATGGACTGCAGCTGGCTGAAGGTCTTGCCACACTCGCCGCAGCGGTGCGGTTTCACCCCCGTGTGGATCTGCCGGTGGTTGTTCAGGTCCTTCAGGTGGCTGAACTTCTTGCCGCAGTCGTGGCACAGGTAGGGTTTCTCCCCCGTGTGGTATCGGTAGTGGTACTGGAGGTAGCTCAGCTGCCTGAAGGTCTTCCCACACTCGCTGCAGCAGAAGGGCTTCTCTCCCGTGTGAATCCGCTGGTGCTCCTTCAGACGCCCGAGGAACTTGAAAGACTTCCCGCACTCGGCGCACTGATGGGCACTTCTCTCCTTCCTGGGTTTCAAGTGGGGAACAGGCCGCGACTTCTGAAGCTCTCCGGCAGTGGAAGGGAGGCATTCCGCCCCCGGACTTTGCCCACCATCCCCCCGCGGAGATGACCGCGGCCCCTCGTCGCAGCTAAAacccagctcctcctcctcctccttcacgACAATGTGCAGGCCTTCGTAGTCTTCATCTTTCACGGGCGCCTCGTCAGGCTGCGGTGCTTCACATTTGATGAAGACAGATTCCAAGTCCACAAATTTCTTTGGGTTGGTGAAAGAGCCGGGCCCGGGGAGCTCGTGGTTCTCCTGGACCAACTCCATTGGCCCAGTATTTCAGGAGAATCGGCTACTTCAACACCCCAGggctgaaaataacatttgactgagagaaagaagaaatacCTCTCTGTGTGACTAGCTGGATGTCTCTCAGTCTTCATGGCTTGCTGGATGCATCTCTGACAAGCAAACGTCTATAACTAGAACTCTGCTTATCCATGGCTGTGATCCACTGTCCTCCAGCACATGTGCGTGACATGACAACCCCGAGGGACCAGTGCGTTTATTGTGATGtttcttgcttttattttccatcagCGACGCACCCGTCTACCAGGACAACGATC

Function

GO:

id name namespace
GO:0005622 intracellular anatomical structure cellular_component
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005620 True 4379 mRNA 0.48 8 5317898 5337528

Neighbor

gene id symbol gene type direction distance location
AMCG00005617 NA coding downstream 4924 5310659 ~ 5312974 (-)
AMCG00005618 derl2,LOC106567674,LOC107735937,LOC107579789,LOC107093934,LOC107580170 coding downstream 7966 5306588 ~ 5309932 (-)
AMCG00005619 rabep1,LOC106603450 coding downstream 21345 5283576 ~ 5296553 (-)
AMCG00005586 NA coding downstream 49220 5249374 ~ 5268678 (-)
AMCG00005587 prkrip1,LOC107600793,LOC107691809 coding downstream 73576 5241801 ~ 5244322 (-)
AMCG00005616 NA coding upstream 6981 5344509 ~ 5348268 (-)
AMCG00005574 LOC106602867 coding upstream 34933 5372461 ~ 5405899 (-)
AMCG00005576 LOC106602867,LOC107597455 coding upstream 106633 5444161 ~ 5444610 (-)
AMCG00005575 NA coding upstream 123391 5460919 ~ 5467836 (-)
AMCG00005625 NA coding upstream 170724 5508252 ~ 5513394 (-)
G152942 NA non-coding downstream 786166 4531440 ~ 4531732 (-)
G152915 NA non-coding downstream 1017500 4292030 ~ 4300398 (-)
G152894 NA non-coding downstream 1057586 4257221 ~ 4260312 (-)
G152853 NA non-coding downstream 1324377 3989919 ~ 3993521 (-)
G152815 NA non-coding downstream 1525454 3788208 ~ 3792444 (-)
G153141 ruvbl2,LOC107664527,LOC107597476,LOC107677411,LOC107587476,LOC107722783 non-coding upstream 13825 5351353 ~ 5352345 (-)
G153143 NA non-coding upstream 15825 5353353 ~ 5355697 (-)
G153178 NA non-coding upstream 149781 5487309 ~ 5489599 (-)
G153236 NA non-coding upstream 310830 5648358 ~ 5648709 (-)
G153248 dhx33 non-coding upstream 403964 5741492 ~ 5748572 (-)
G153130 NA other downstream 15700 5300769 ~ 5302198 (-)
AMCG00005539 NA other downstream 1025027 4284717 ~ 4292871 (-)
AMCG00005560 LOC106568075,LOC104946632,LOC106603282 other downstream 1448689 3850136 ~ 3869209 (-)
AMCG00005525 LOC106567758 other downstream 1685186 3606961 ~ 3632712 (-)
G152645 NA other downstream 2227184 3071860 ~ 3090714 (-)
G153342 NA other upstream 743707 6081235 ~ 6082866 (-)
AMCG00005628 LOC107090330,LOC102220786 other upstream 894631 6232159 ~ 6234028 (-)
AMCG00005674 NA other upstream 1152727 6490255 ~ 6496571 (-)
AMCG00005685 NA other upstream 1771690 7109218 ~ 7145807 (-)
G153733 auts2 other upstream 2448026 7785554 ~ 7788321 (-)

Expression


Co-expression Network