AMCG00005625


Basic Information

Item Value
gene id AMCG00005625
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 5508252 ~ 5513394 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005625
tgcaaattcatttaacaattgtttataaacatatatttgtctATATCGCTTGCAGCTGGAGATAATAAAGAAATCCTGTTCAATGCATATGCCACCATTCTACCTTTACCAAAATACCCTGTGTATTACGTCATCAATGTTTATTTCGGAAATAGCCAGGAAATGGGAATTCCGGTGTCCGACGTCAAAATGTTCCGACGATCAACAAGCTGAAGCAAAACAGGGTTCCTCGCCGTAGAGGAGCGGGTTTGAATGGGAACATATTATGGCACATCCAAACcgctataaaaatataaaggtTATCAAAGACCTGTATTTATTATGTTCCAAGGACAAAGTATAGGCTGACGATAATGCTTGCATTGTGTGTATTCATCCGATCTGGCCTTAACATCGTGTGTGTGCGATCAAGTGTTTCCCCCATGTTTATTGTTCCACACATGCGCTCTAATCCCTTTAAAACCCGGAAAACTGGTTGTGCATGTCAGTATAATGGACAGGACGGGTTCATTTCCCGATGGCAGAGCACGTTTCATGCACAGTATAAAAACACCTCCGTGCGTAACCAAGCTTAGTCCACAATGAGGTATTTGCTGGCAGTGATATTCGTGGCTGTAGGCATCCTCATTTTTCCGTACAGCAGAAACCTGATTGAAATAAACCTCCCCCGAGGAATTGACTTCATATTAAAAGCCTGGAGCTCCCAGGACTCAACCCGGGTGTTCAGGCAGGAGGAGCTGGGCCTGTACAACGGGCAGCCGGGCAGCCGCGGCCTGTACCTGTCCATTGTGGGACAGGTGTTTGACGTGAGTAAAGGACGGAAGCACTATGGACCAGGGGGGTCTTACCACTTCTTTGCAGGCAGAGATGCATCCCAGGCCTTCGTGACCGGGGATTTCACAGATGCTGGGCTGGTGGATGACGTGTCGGGACTTTCCCCGCTTCAGATGGTGGCTCTGTTTGACTGGCTGTCCTTCTACCAGAAGGATTATGTCCTAGTGGGCAGGTTGACTGGGAGGTTCTACAGCGAGACGGGGGAGGCCACCGGTGCCCTGCGTCAGGCCGAGGCTGCCCTGGCAGAAGGGCTGAAACTCAAGGCCCAAGCCGAAGCGGAAAACCAGCTTTTCCCCTCGTGCAACTCGGAGTGGAGTTCAGCCAGCGGGGGGAGAGTGTGGTGCTCAACACGGAGTGGAGGGGTGCACAGGGACTGGGTGGGCGTCCCCAGGAGGATGTTCAAGCCAGGCCTCGGCGGCTCTCGCTGTGTGTGCGTCAGGACCGGCGACACCGGCCGCCTGGACCACCCCAGCCTGCAGGAGTACGAGGGCTGCCCCTCTCTCGCCGAGTCCTGTGCCTTCAGGGACTAAGAGACCTTCACACTTCTACACCGAGTCCACACTGAGCAAGCCTGAGGACAGGAGGCTGGGTCAGGAATAGACACTTATTCTGAAACTAATCGGCCAACCACCTTCATCCTATGATTTGTAGATGTTGGTGTCCACATACTTGGACATTAGCTGGACTGGTTGGTTGTATGAATGTCTATTTAACACAAGGAaacacgatgggttgaatggcctcctctcgactgtaAACTTTGTTTGTCTGTTGCAGTCCCCAGCTAATGGTCATGGAATATATACAAGCAGTCTTTATACCGAAAAGGGAATACAATTTTTTAGTTTGTTAGTTACTTGCTATGTTTGCCTCCAGTCTTatgttatacatgttttttttccttttagtttGGCAATAAAGTTTCAAACGAGTTAAAACATGTTTCCGGTTTGCAAATAGTGATGAAAACAACTCTGTCGCAGCAGATGTATTTGTAGTTTTGCCccagtacattttttaaatttggatATACACTATTCCAGATTCAATAATGTAATATGAGAGGAGACTATTCacatcactttttattttacttttgcatATTAACAAGGTGAACAATAATAGAGGCATAGCTCCAATCTCAGCATTACTGTGGATCGGATGGCATCGTGGACAGCGACAACTTCTCCATTTTGAAATCTGATCCACTTTCTCCCAGGATTCTTTGCACAAGTTTGTTATTCATAGAGGGTGTGTCTGTCTGGAATAGTTTCACATTCATTTCTGCTCCGATCGCTAATAAGGAAACGCACGGTAATCCCGCATTCAGCGATTCCTTTATTTTATACCTAAAcTCACGTATAAAAGCGCTCTTTTGGGGTTGTTGGACAGCTGTTGCTGTTTAGGAGGATCACCAGTTGACCTGATCACAGGGAAGTATTTAATTCATTCCCACAAACGAGTGTTTAGCACATAAAAGCAACCGCAGCATGGCGTCGCAGGAGAGCGTGTGGAGGGAGCTCCTCAACAGACTGGAGAGAAATGACTTGGAGAAGCTGTTGAAGGCAGTAGGGCAGAGCAGCAAGAAGCTCAGTAGATCTGTCATGATCACCAACATTATGAAGCACAGCCTGAACTCCACAGAGCTGCTGAAACGCACGGCACTCAGCAAAAACACACTTCTGCAGTACGGGCTGGAGAAGCGCCTGGCGGTGTCCTCTACTCAAACCAAGGACGAGATTGCTCGGAAAATCTAAGAAAGTTGGGAGGCCACGGCAAAATGGAGGCCTAGATTGAAACCCCATGAAAGTGAGGAGTGCCTGAAGATTCTTCAGCGGCTCAGGACTCCAGATATAGAGAAGCTGATGTCCAAGCTTGGCTGTATGGAAGGAGTCGGTGGATTGGCTCCTACAGAGGAGGTTTGTCACCAGGGAGACGCTGACCTACTATCTGGGGACTGAAAGAAATATCCCAACGATGCAAGTTTCAAAAGAGAGGCTTGTGGAGTGTGTATTAGATCAAATACAACAGAGTGAGTGATGCACACAACATCACAAGTACAAATGTAAGAAATTGATACCAACACTAATGGAGATCATCAATGCTGTATCATGGTCTCTGGATTTTCtccatgttttttgtgttgctcTACAACTCATGTTatgtaattgcttttaaaattaatccaCACCGTCTTCTATTATATTTTAGATCTGTATACATTTCTGGTTTCATTGCATGATTTCACTTATTacttgcatgtatgtatatgctgCCATCTATGTTTGTGTTCTCTTATTTAGTTTGAAGAACTAGATCACAGTGCATAATACTGTTAAACTGGGAACTGGTGCACTACAATACATCCTCCTCCAGAGTGTTATTACTGGGggtctaattttaaatgcagcTAATCTTACATTTGTTGTAAGAACTCTCAGcctgtaatacagtccagtaaAACATGTTGTATATGTTCATGTTTATGGCCTAGCTACAGGATGTCTGACAATTATGCTGTTATCATGGCCAGCTTGCAAAAGGAATACTGTGGGGAACAATACAAGAAGCAGGGTTATCATTTCTGATTGCAGTAAAAAGTGAAAAGTATACCCACGATCAAGGTTGCTGTTGTATAACCTGAAAGCGATTTGCTTATGTGTGTCGTGAAAGCCTTTTGCTAAACAAAGTAGCCCTGTAAGCCAGCCGGGGGGTTGGAGAGCCAGTCGATGTGACACATGGTGTAAATAAAGCATCAAACAAGCTGAAGGATAGCCATTTCAACTGTGAACTAGAACAACTGCACTTTTTTTGAATGGCAATTTACAGTTTATGCTGTTTTGGCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005625 True 3680 mRNA 0.45 5 5508252 5513394

Neighbor

gene id symbol gene type direction distance location
AMCG00005575 NA coding downstream 40416 5460919 ~ 5467836 (-)
AMCG00005576 LOC106602867,LOC107597455 coding downstream 63642 5444161 ~ 5444610 (-)
AMCG00005574 LOC106602867 coding downstream 102353 5372461 ~ 5405899 (-)
AMCG00005616 NA coding downstream 159984 5344509 ~ 5348268 (-)
AMCG00005620 NA coding downstream 170724 5317898 ~ 5337528 (-)
AMCG00005606 NA coding upstream 153466 5666860 ~ 5709455 (-)
AMCG00005605 NA coding upstream 235382 5748776 ~ 5751438 (-)
AMCG00005610 LOC101160255,LOC103021402,LOC100700540,LOC105025792 coding upstream 406806 5920200 ~ 5931156 (-)
AMCG00005611 NA coding upstream 423421 5936815 ~ 5947317 (-)
AMCG00005601 supt4h1 coding upstream 556798 6070192 ~ 6072666 (-)
G153178 NA non-coding downstream 18653 5487309 ~ 5489599 (-)
G153143 NA non-coding downstream 152555 5353353 ~ 5355697 (-)
G153141 ruvbl2,LOC107664527,LOC107597476,LOC107677411,LOC107587476,LOC107722783 non-coding downstream 155907 5351353 ~ 5352345 (-)
G152942 NA non-coding downstream 976520 4531440 ~ 4531732 (-)
G152915 NA non-coding downstream 1207854 4292030 ~ 4300398 (-)
G153236 NA non-coding upstream 134964 5648358 ~ 5648709 (-)
G153248 dhx33 non-coding upstream 228098 5741492 ~ 5748572 (-)
G153272 NA non-coding upstream 287254 5800648 ~ 5800906 (-)
G153313 NA non-coding upstream 534736 6048130 ~ 6048470 (-)
G153324 NA non-coding upstream 555393 6068787 ~ 6069014 (-)
G153130 NA other downstream 206054 5300769 ~ 5302198 (-)
AMCG00005539 NA other downstream 1215381 4284717 ~ 4292871 (-)
AMCG00005560 LOC106568075,LOC104946632,LOC106603282 other downstream 1639043 3850136 ~ 3869209 (-)
AMCG00005525 LOC106567758 other downstream 1875540 3606961 ~ 3632712 (-)
G152645 NA other downstream 2417538 3071860 ~ 3090714 (-)
G153342 NA other upstream 567841 6081235 ~ 6082866 (-)
AMCG00005628 LOC107090330,LOC102220786 other upstream 718765 6232159 ~ 6234028 (-)
AMCG00005674 NA other upstream 976861 6490255 ~ 6496571 (-)
AMCG00005685 NA other upstream 1595824 7109218 ~ 7145807 (-)
G153733 auts2 other upstream 2272160 7785554 ~ 7788321 (-)

Expression


Co-expression Network