AMCG00005629


Basic Information

Item Value
gene id AMCG00005629
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 6247150 ~ 6255757 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005629
ATGGCGCTCCCCGCACAGCCGTCTCTCCTCacgctgctgtgtgtgttgtcgGTCTGCGGGGTCTGCGCGGCTCTGGACGGCGGGATGCTCTTCCCCAGGGAGTCGCCGTCCCGGGAGAGGAAGCTGCTGGACGGGGTGTGGAAGTTCAGAGCCGACTTCTCCAGCAGCAGGAACCGGGGCTTCGAGGAGACGTGGTTTAAACGGCGCCTGGCGGAGACAGGCGCTGTGATTGACATGCCCGTCCCAGCGAGCTTCAATGACATCACCCAGGACGCCCAGCTGCGGGACTTCGTTGGCTGGGTGTGGTACGAGAAGGAGGTGTGGGTGCCCGGGCGCTGGGGGTCCGACCCAGGGCAGCGCGTCGTGCTGCGAGTGGGCAGCGCTCATTACAACGCTATTGTCTGGGTCAATGGAAACCAGGTGACCCAGCATGTGGGAGGCCACTTGCCCTTTGAGGCCGACATCAGCGCCCTGATCCGCGAGGCACCCGGCCAGCCCTGCCGAGTCACCATTGCCGTCAACAACACCCTGACCCTCACCACGCTGCCACCGGGAACCATTCAGTACATGAAGGACCCCACAAAGTACCCACCTGGCTATTTCGTGCAGAATATCGACTTCGACTTCTTTAACTACGCTGGCGTCCATCGTCCGGTCCTCCTGTACACCACGCCCGTGGCCTATATCGATGACATCACCGTGCAGACGAGCTTCGCAGACAGTATGGGGGTCATAAACTACGAGGTGTCGATCCGGGGAGCCCAGGACCCAGCCGTGACCGTGACTCTGTCTGACGCCGAAGGCATGAGCGTCGCCACGGCCAGCGGACTGTCGGGGACTCTCAAAGTGGAGAATGTGAACCTTTGGTGGCCGTATCTAATGCATGAAAACCCAGGATATCTTTATTCTATGGAGGTCACCAAGAGCCAGTTTCTCATCAACAACAAGCCGTTCTACTTCCATGGCGTGAACAAACACGAGGATGCGGATATTCGAGGGAAGGGGCTGGACTGGCCGCTCATCGTGAAGGACTTCAACCTCCTGAAGTGGTTGGGAGCCAACTCCTTCCGCACCAGCCACTACCCGTACGCCGAGGAGATCCTGGACCTGTGTGACCAGCACGGCATCGTGGTGATTGATGAGTGCCCGGGGGTGGGCATCAAGGACATCCGCAGCTTCGGGAACGAGTCACTGGCGCACCACCTGGTCGTGATGGAGGAGCTGGTGCGGAGAGACAAGAACCACCCCTCTGTGGTCATGTGGTCCGTGGCCAACGAGCCGGCCGCTGAGATGCCCCCCGCAGACTTCTACTTCAAGTCAGTGATCCAACATACCAGATCGCTGGATCACTTCCGGCCCGTCACCTTCGTGTCTAACAGCAACTTCGCCCGAGACAAGGGGGCACCCTATGTGGACGTGATCTGTGTGAACAGCTATTTCTCCTGGTATCACGACCCCGGCCACCCCGAGCTCATCCCCATCCAGCTCAACACTCAGTTTGAGAACTGGTACAGCAAGTACAAGAAACCCATCATTCAGAGCGAATATGGAGCTGACGTCGTGCCGGGGTTACACATGGATCCTCCAATGATGTTCACAGAGGAGTACCAGAACACCGTGCTGCAGTATTACCACTCTGTGTTTGACCAGAAGAGGCAAAAATACCTCATTGGGGAACTCATCTGGAACTTTGCCGACTTCATGACAGCACAGACCATCACCCGCGTGGTCGGCAACAAGAAGGGCATCTTCACTCGTCAGCGGCAGCCCAAGGCCGGAGCCTTCGTCCTGAGGCAGCGCTACTGGCGTCTGGCGAACGAGACCGGACGCCTGCCCCCGTGGAACCGCTATCCG

Function

GO: NA

KEGG:

id description
K01195 uidA, GUSB; beta-glucuronidase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005629 True 1854 mRNA 0.59 12 6247150 6255757

Neighbor

gene id symbol gene type direction distance location
AMCG00005598 hpda,LOC108413266,LOC108260398 coding downstream 76852 6158725 ~ 6170298 (-)
AMCG00005601 supt4h1 coding downstream 174484 6070192 ~ 6072666 (-)
AMCG00005611 NA coding downstream 299833 5936815 ~ 5947317 (-)
AMCG00005610 LOC101160255,LOC103021402,LOC100700540,LOC105025792 coding downstream 315994 5920200 ~ 5931156 (-)
AMCG00005605 NA coding downstream 495712 5748776 ~ 5751438 (-)
AMCG00005638 NA coding upstream 32712 6288469 ~ 6296947 (-)
AMCG00005642 NA coding upstream 50076 6305833 ~ 6309531 (-)
AMCG00005640 NA coding upstream 53799 6309556 ~ 6317063 (-)
AMCG00005639 NA coding upstream 70439 6326196 ~ 6328995 (-)
AMCG00005641 myo19 coding upstream 78530 6334287 ~ 6339833 (-)
G153375 NA non-coding downstream 11741 6235183 ~ 6235409 (-)
G153374 NA non-coding downstream 12292 6234548 ~ 6234858 (-)
G153373 NA non-coding downstream 12791 6234128 ~ 6234359 (-)
G153324 NA non-coding downstream 178136 6068787 ~ 6069014 (-)
G153313 NA non-coding downstream 198680 6048130 ~ 6048470 (-)
G153487 NA non-coding upstream 305182 6560939 ~ 6563570 (-)
G153514 NA non-coding upstream 391559 6647316 ~ 6662496 (-)
G153586 NA non-coding upstream 679673 6935430 ~ 6935676 (-)
G153638 NA non-coding upstream 797048 7052805 ~ 7053559 (-)
G153678 vmp1,LOC105021956,LOC107728773 non-coding upstream 923871 7179628 ~ 7202286 (-)
AMCG00005628 LOC107090330,LOC102220786 other downstream 13122 6232159 ~ 6234028 (-)
G153342 NA other downstream 164284 6081235 ~ 6082866 (-)
G153130 NA other downstream 944952 5300769 ~ 5302198 (-)
AMCG00005539 NA other downstream 1954279 4284717 ~ 4292871 (-)
AMCG00005560 LOC106568075,LOC104946632,LOC106603282 other downstream 2377941 3850136 ~ 3869209 (-)
AMCG00005674 NA other upstream 234498 6490255 ~ 6496571 (-)
AMCG00005685 NA other upstream 853461 7109218 ~ 7145807 (-)
G153733 auts2 other upstream 1529797 7785554 ~ 7788321 (-)
AMCG00005704 NA other upstream 1743579 7999336 ~ 8001405 (-)
G153806 NA other upstream 1835991 8091748 ~ 8124685 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_030747 gusb coding NC_007116.7 CM002889.2 2066262 ~ 2112030 (-)
grasscarp (Ctenopharyngodon idella) CI01000205_00671471_00689416 GUSB coding CI01000205 null 670152 ~ 689416 (-)