AMCG00005630


Basic Information

Item Value
gene id AMCG00005630
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 6933254 ~ 6936834 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005630
ATGGCCTCTAGAGGCCGGCAGAGCACCGCAGTTGAGTTATACAAACACGATCCAATGGAAAGCTGCCTGTCAGTGCCACTGTTTAATCAAAAGAAACGAAGCAGACTGCCTTTAACATCCAACCCCTCGGAGCATGAATTCTACTCTAGTAGTGATTATTCATCTGGGCAGAGTTCTGCATCTTCAACTTTGTCATCAGATAATGCAGGGATTTCCCAAGTACTAGGACCAACCAACTCAAAGCCTCATGTGCAGAACAGTCAGTGGAACAAGCCAGGATATCAGAACACAAGACCTAACTCAAACCCTGCAGGAAGGAGCTATGCACCAATGCCACACCCAGGCAAGACTGGGAACATGGGACCGAGAACAGGAAAGCCAAGTGCAAATACCAAACAAAGCATCTTTCCTAACAGTAGTGGAGCGTTTCCCAACAAAACGAATACCAGCCAGGCCTACCCACGGGCCGAGCTGCAGTCGTTTTACAGTCAGCCACACCCCTCCGAGTCTTTCCAGCACCGAGACCTACAGAGGCCCAGGCCAGGCCAGCCAAACACCCCCGCATCGAGACCCCACCACTCCGGCTGGAAATTCACTCCGAATTCAAGCATCAGTCAGTTTAATGAGGACGACCTGGATGCGTTTTCTGCTGATCACTTTGACAAGCCTCAGAAGCAACCGGTTTTGCAGATAAAACCTGCAGAGGATAATTCCCTGCGCGTCCTGACAACTGTTGTCGAAGGCATGAAGCACTGGAGCCAGTACAGAGACAGGGCCGCCTTCCTGTTTGAGATTTTCGCGACACTCGACTCAGCCGTCACGACCGGGAGCCACGGGGCCAAGAACTTCCTCTTGAGAGACGGGAAGCATGCGGTGCAGTGCGTCTTCTACGAAACCGACCGTGAGCTCCCGAGACTCATCAGGGGTCAGGTCCACCGCTGTGTGGGGAACTACGACCGGGGCAGAAACCTGCTGAAGTGCGTGTCCGTGAGGGCGGCCACGCTGTCCGAGCAGAGAAACTCCGCTGGGTCAGTGAAAGCGTCTGACGCCGTCATGAGAGAGTTTGTGAAGACGTGCCGCGAGGTTTAG

Function

GO: NA

KEGG:

id description
K22421 SPATA22; spermatogenesis-associated protein 22

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005630 True 1089 mRNA 0.54 7 6933254 6936834

Neighbor

gene id symbol gene type direction distance location
AMCG00005643 timm22,LOC107595490,LOC107688620,LOC107731058,LOC107740820,LOC107665041,LOC102778162 coding upstream 147395 6784162 ~ 6785859 (+)
AMCG00005662 NA coding upstream 263864 6664179 ~ 6669390 (+)
AMCG00005661 ncor1 coding upstream 314668 6602985 ~ 6618586 (+)
AMCG00005669 LOC107676655,LOC107718355,LOC107680877,LOC107553589 coding upstream 363155 6568087 ~ 6570099 (+)
AMCG00005668 NA coding upstream 372587 6551704 ~ 6560667 (+)
AMCG00005681 NA coding downstream 210165 7146999 ~ 7151960 (+)
AMCG00005682 NA coding downstream 233691 7170525 ~ 7174305 (+)
AMCG00005686 ptrh2,LOC107744620,LOC107576753,LOC107699263,LOC107548881 coding downstream 304446 7241280 ~ 7241786 (+)
AMCG00005693 NA coding downstream 362841 7299675 ~ 7304137 (+)
AMCG00005696 NA coding downstream 406174 7343008 ~ 7343639 (+)
G153485 NA non-coding upstream 369776 6560899 ~ 6563478 (+)
G153390 NA non-coding upstream 539526 6333252 ~ 6393728 (+)
G153381 NA non-coding upstream 601883 6282988 ~ 6331371 (+)
G153348 LOC107090330,LOC102220786 non-coding upstream 699207 6232159 ~ 6234047 (+)
G153312 NA non-coding upstream 884816 6048130 ~ 6048438 (+)
G153626 NA non-coding downstream 165371 7102205 ~ 7157875 (+)
G153687 NA non-coding downstream 360300 7297134 ~ 7297381 (+)
G153689 NA non-coding downstream 361320 7298154 ~ 7298512 (+)
G153702 NA non-coding downstream 423550 7360384 ~ 7361317 (+)
G153747 NA non-coding downstream 950732 7887566 ~ 7887780 (+)
AMCG00005663 NA other upstream 270774 6608643 ~ 6662480 (+)
AMCG00005667 NA other upstream 444472 6487718 ~ 6488782 (+)
AMCG00005647 NA other upstream 496176 6434521 ~ 6437078 (+)
AMCG00005583 LOC106603777,LOC105895333,LOC108428505 other upstream 1691478 5214813 ~ 5241776 (+)
AMCG00005546 acaca,LOC107691719 other upstream 2370234 4560213 ~ 4563020 (+)
G153675 NA other downstream 323843 7260677 ~ 7265971 (+)
AMCG00005694 NA other downstream 370224 7307058 ~ 7334571 (+)
AMCG00005660 LOC106603524 other downstream 812349 7749183 ~ 7787871 (+)
G153815 NA other downstream 1277070 8213904 ~ 8230590 (+)
AMCG00005720 NA other downstream 1561668 8498502 ~ 8507097 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location