AMCG00005645


Basic Information

Item Value
gene id AMCG00005645
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 6722947 ~ 6743221 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005645
GTTCCATCGGCCAAAAAGACTGGGATTCCCACCCCCAGAGAGATTCCCACGTCAATATCAAGAGACCGACTTTCCTTGCGAGATCAGCTACGGACGCCGAACACTAAGAAAATGGTTCCCAGTGCCAGCACGTCCAGTCTTGCAGTGCTTGCCAAGCACTCCCGCGCCGCTATCAAAGCCAAACCAGACAGCGAGACGAACGACAAAGCGGTCCTGGAGTGTCAGGTCAAAGAGCTCCTCGCCGAGGCCAAGGCCAAGGAGTTTGAAATCAGCAAACTGCGTATGGAGCTGAAGCGCTACAAGGACAGGGGGACACCAGACGCGACGACGCCAGAGAGCACGGACCTGGACCAGGATGGCCTCGCTGCGCAGCCTGCTGAGGTGCAGTCCTTGGTCACGACACTACGGGAGAAAAACCGAACTTTCCAACGCGAGTTGGCAGGACTGCGGGAAGAGAACCAGACCCTAAAGGAGAAGCTCCTGTTGCTGGAGCACTCACCCCTCTCCAGCAGCAACAACaccaacagcaacagcagcctTCCCCAATCTTTAGCCAGCCCCGTCAAGCACCCTGTCAACGGGATCCTCTTGGATGGCACCAGGCCTCCTCTAGGTGGGAGCCCTTTAAGGACCTCCGCATCTTCCAGCAGTGATATCACCAAGGGGTCCCCTTCTCCAGATTCCTCAGAGTTTGAGAAAATCCCCTCCCGGTCAGAGTCTCTCAGCAGCAGCATTGGGAATCGCAAAGGTTCAGCCGGTCTCAGTTCGCCCCGAGCCCGGGATCTGTCAGTGGAGTGCCTGACAGAGCAGATCCAGAAGATGGAGGAAAGTCACCACAGCACCGCGGAGGAGCTGCAGGCCACCCTGCAGGAGCTCTCCGACCAGCAGCAGGTGGTGCAGGAGTTGACGGCCGAGAACGAGAGGCTGGCTGAGGAGAAGGGCCTCCTGCAGACCTCGCTGCAGCAGCAGAGGGAGCGCGTGGAGCACCTGGCCCAGAAGAACGAGAGCCTCCTGACCCGGCTGCAGGAGGCGTCCAAGAGCGAAGAGAACGAGGCCAAGGCCGCCAGGATCAGCGAGCTGGAGCAGAGGTATGCAGAGCTGGTGGAGAGCTCGAGGTTCGAAAGGGAAAAACTGGTGGACATCCAGCAGCAGCTGACGGGCAGCCTGAGATCTCTGGAGAAGGAGCACCAGGAGGCCCAGGGGCTCATCAGGACCCTGAAGGAGGAGAAAGATCTCCTTCAGAACTGcgtggagaaggagaaggaggccAGTGGGGAGATCTCTAGGACTCTGGAGGAATGTCAGTCTAGCGTGGAATTGCTGAAGGTAGAAAACGGGAGGTTGAAGGTGCAGGTGGATATTGAGAAGCAGAAAGTGACCGAGCTGAAAGCCATGCAGAGCGCCAGCGACAACACGGAGCTGCAGCACCTGCTGAAGGCGGCGCACGCGGAGAAGGAGCACCTGGAAGTGTCTGGCACTGAGCTGAgacaggagctgctgcaggccAATGCTGAGATCGAACgCAGTGAGCaggctgtgctctgtgctgtgcaggtGGAGGCAGAGTGCCAGCGTCTGCAGTCCCAGTGTGACCGCCAGGAGATGGAGCTGAGCAACAGCGCCCAGCGTCTggaggagaggaccagtgagaAGGAGACCCAGATTAAAGACATGAAGGAGACCATCTTCGAGCTGGAGGACCAGGTGGAGCAGCACAGGGCCGTCAATCTCCACAACAACCAGACCATCCTGGACCTGGAAAATGAACTCAAGAAGTTGGAAGAACAGAAATCTGAAGTGGAGAAACAGCTGAAAGCATTAAACAAACAGATGAAGGACGACGTGGAGGAGTGGCGGCGTTTCCAGGCCGACCTGCAGACCGCCGTGGTGGTGGCCAACGACATCAAGGTGGAGGCCCAGCAGGAGCTGCGCGCGCTGCGGCGCCGGCTGCAGGAGGAGCAGGAGCGCAGCGCCAAGCTTGCCGGGGAGCTGGAGCAGCTGCAAGGGAACAGgcTGAGGAATGAGGAGGCCTGTTCTTCGGACACGGAGGGCAGTCCTCAGTGGTGTGGCATCTCCATCAGTCAGACCGCCTCCGCTCCCTCAGAGCCAGCCGCCAACGTGAAATCCCTCATCAAGTCCTTCGACTCAGCGGTACAGGGGACTCCGGGGCACACAGTACAGATGCACTCCACTCCCAGAAGCCCCTTAAGTGGGATCCCTGTCCGCACGGCCCCCGCCGCAGCGGTCTCGCCAATGCAGagACATTCATCCATTAAGCCACTTTCTAAAACTCTTGAGAAGAGAATAAACCTGGGGGATTTCTCTCATCCAGACAAACTGCCCGGCCACGGTGAGGAGATGAAGCCCAATAGTCTGATGAGGAAGAGCCCGTCCCTGGAGTCGGTCATCAAGTCACCCGCGGCAATGACCGGCCGCACCTCCTCCCTCAGCTACCCCAAAGCCAACAGCAAGCTGAGTGTGGAAAGAAAAGACCCCTTGGCTGCACTTGCCAGAGAGTATGGAGGATCTAAGAGGAATGCTCTTCTGAAGTGGTGCCAGAAGAAAACAGAAGGCTATCCGGGACCCGAACCCTGCCTACATTCTCCGGCATTAGAGGCCTCGCTGTGCGTTTGGGCCCTGACTGGATTCACGAAACTCTGTGACAGCGGG

Function

GO: NA

KEGG:

id description
K23028 SPECC1; cytospin

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005645 True 2670 mRNA 0.59 11 6722947 6743221

Neighbor

gene id symbol gene type direction distance location
AMCG00005646 NA coding downstream 10961 6706658 ~ 6711986 (-)
AMCG00005644 NA coding downstream 18587 6690451 ~ 6704360 (-)
AMCG00005664 NA coding downstream 128053 6582699 ~ 6594894 (-)
AMCG00005665 NA coding downstream 147316 6571057 ~ 6575631 (-)
AMCG00005672 NA coding downstream 177067 6528567 ~ 6545880 (-)
AMCG00005654 abr,si:ch211-253h3.1,LOC103375456 coding upstream 44639 6787860 ~ 6800839 (-)
AMCG00005655 abr,LOC107731041,LOC107688618,LOC107712163 coding upstream 82708 6825929 ~ 6872866 (-)
AMCG00005632 NA coding upstream 166097 6909318 ~ 6920861 (-)
AMCG00005631 NA coding upstream 180828 6924049 ~ 6931866 (-)
AMCG00005633 tmem211,LOC103045102,LOC108427286,LOC101167817,LOC106534416,LOC106603516 coding upstream 196591 6939812 ~ 6944352 (-)
G153514 NA non-coding downstream 60451 6647316 ~ 6662496 (-)
G153487 NA non-coding downstream 159377 6560939 ~ 6563570 (-)
G153379 NA non-coding downstream 465775 6240402 ~ 6257172 (-)
G153375 NA non-coding downstream 487538 6235183 ~ 6235409 (-)
G153374 NA non-coding downstream 488089 6234548 ~ 6234858 (-)
G153586 NA non-coding upstream 192209 6935430 ~ 6935676 (-)
G153638 NA non-coding upstream 309584 7052805 ~ 7053559 (-)
G153678 vmp1,LOC105021956,LOC107728773 non-coding upstream 436407 7179628 ~ 7202286 (-)
G153681 NA non-coding upstream 535283 7278504 ~ 7278765 (-)
G153742 NA non-coding upstream 1131566 7874787 ~ 7875042 (-)
AMCG00005674 NA other downstream 226376 6490255 ~ 6496571 (-)
AMCG00005628 LOC107090330,LOC102220786 other downstream 488919 6232159 ~ 6234028 (-)
G153342 NA other downstream 640081 6081235 ~ 6082866 (-)
G153130 NA other downstream 1420749 5300769 ~ 5302198 (-)
AMCG00005539 NA other downstream 2430076 4284717 ~ 4292871 (-)
AMCG00005685 NA other upstream 365997 7109218 ~ 7145807 (-)
G153733 auts2 other upstream 1042333 7785554 ~ 7788321 (-)
AMCG00005704 NA other upstream 1256115 7999336 ~ 8001405 (-)
G153806 NA other upstream 1348527 8091748 ~ 8124685 (-)
G154142 NA other upstream 2347201 9090422 ~ 9092573 (-)

Expression


Co-expression Network