AMCG00005646


Basic Information

Item Value
gene id AMCG00005646
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 6706658 ~ 6711986 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005646
ATGTTTGTGTTCCAGGACGGGGCGATGCTTGGCACACTTCAGAATGATGAGTTTAACATCGACGTGACCAACTTCAGCAGCAGCTGGAGCGACGGGCTGGCGTTCTGCGCTCTCCTGCACACGTACCTGCCCGCGCACATCCCCTACCGGGAGCTCATTAGCCAGGACAAGGGCAGGAATTTAACCCTGGCTTTCCAGGCCGCGGAGAGTGTGGGCATCAAGCCGTCCCTGGCGCGCTGCAGTGGCATCATTCTCCGGCTCCAGGACCGGCCTATATTTTACCCGTCCTGGCAGGCAGTACAAGCACAGACTGACTCATCTCTCATCTCTCGCCCCGCGCAGGACATCAATGAGCTGATGCACACGGACCGGCCCGACTGGCAGAGCGTGATGCAGTACGTGGCGCAGATCTACAAGTACTTTGAGACCTGA

Function

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0005248 voltage-gated sodium channel activity molecular_function
GO:0005272 sodium channel activity molecular_function
GO:0015081 sodium ion transmembrane transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005646 True 432 mRNA 0.59 5 6706658 6711986

Neighbor

gene id symbol gene type direction distance location
AMCG00005644 NA coding downstream 2298 6690451 ~ 6704360 (-)
AMCG00005664 NA coding downstream 111764 6582699 ~ 6594894 (-)
AMCG00005665 NA coding downstream 131027 6571057 ~ 6575631 (-)
AMCG00005672 NA coding downstream 160778 6528567 ~ 6545880 (-)
AMCG00005671 NA coding downstream 179038 6502453 ~ 6527620 (-)
AMCG00005645 NA coding upstream 10961 6722947 ~ 6743221 (-)
AMCG00005654 abr,si:ch211-253h3.1,LOC103375456 coding upstream 75874 6787860 ~ 6800839 (-)
AMCG00005655 abr,LOC107731041,LOC107688618,LOC107712163 coding upstream 113943 6825929 ~ 6872866 (-)
AMCG00005632 NA coding upstream 197332 6909318 ~ 6920861 (-)
AMCG00005631 NA coding upstream 212063 6924049 ~ 6931866 (-)
G153514 NA non-coding downstream 44162 6647316 ~ 6662496 (-)
G153487 NA non-coding downstream 143088 6560939 ~ 6563570 (-)
G153379 NA non-coding downstream 449486 6240402 ~ 6257172 (-)
G153375 NA non-coding downstream 471249 6235183 ~ 6235409 (-)
G153374 NA non-coding downstream 471800 6234548 ~ 6234858 (-)
G153586 NA non-coding upstream 223444 6935430 ~ 6935676 (-)
G153638 NA non-coding upstream 340819 7052805 ~ 7053559 (-)
G153678 vmp1,LOC105021956,LOC107728773 non-coding upstream 467642 7179628 ~ 7202286 (-)
G153681 NA non-coding upstream 566518 7278504 ~ 7278765 (-)
G153742 NA non-coding upstream 1162801 7874787 ~ 7875042 (-)
AMCG00005674 NA other downstream 210087 6490255 ~ 6496571 (-)
AMCG00005628 LOC107090330,LOC102220786 other downstream 472630 6232159 ~ 6234028 (-)
G153342 NA other downstream 623792 6081235 ~ 6082866 (-)
G153130 NA other downstream 1404460 5300769 ~ 5302198 (-)
AMCG00005539 NA other downstream 2413787 4284717 ~ 4292871 (-)
AMCG00005685 NA other upstream 397232 7109218 ~ 7145807 (-)
G153733 auts2 other upstream 1073568 7785554 ~ 7788321 (-)
AMCG00005704 NA other upstream 1287350 7999336 ~ 8001405 (-)
G153806 NA other upstream 1379762 8091748 ~ 8124685 (-)
G154142 NA other upstream 2378436 9090422 ~ 9092573 (-)

Expression


Co-expression Network