AMCG00005647


Basic Information

Item Value
gene id AMCG00005647
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 6434521 ~ 6437078 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005647
gggatttacaaaatatacatatttcaagaaacaaaatacaataaaagcaaattTACACATTTATCCCCAATTGTGGTTAAATCCATTCATTCTAGTACTTATCAGGCTACTGGTAAAATGACTCCAAATGAGAGCAAGgtgaaatatgtgtttgttgttttaagacACATGGAAGAGTTTTGTGAATCTGGCCTGTTTGCTCTAAACTAATTTACTCCAGCAGACACAGAAACATTACACTGACATATTCACTCAAAGTTATAAATCCAAGTTGGTcgggacattttattttgttccaggGCGTCTTCATAAAGAGGCTCAAGACTGAGTAGCTTCTCTCGGTGTAAAACCATAAATATATCGGTAGCTAATGTGAGGTGAGTTTGTTTTACAGATGTATGTTAACTAAGTACAGGAAACCTGCAGTATCCCAAACTCTTGCGAATGAATGGTGAGTGTGTGAGGGCAGGTAGATGGGAACTCATTTGTGTGTCAATTACACAATCCTGTTACTTTCACCTGCTCTTGTATTTCTCAGtgtgtgatttaattaaatatgaacattgATCCTGAATATAATAGAACAGCAGCCCACCATGAGAATTACAATTTTACCAGTTTAAAAGCCTTGTCGTGATTACAGAGCAACAACCAAAAACGATATTGGCTTTGCACATAATGTTGCATCAAaagtaataaacaaatattggTTTTCTTAAAATGAGAGGGGAATTAAAGAGAATTGACGACATGAGCCCAGATGGGATGGTGGATTGTGATGTTTTGAAAAGTGTCTGGTCTCTGATAGCGTTCAGGACTGTCATTGGTCCAACGCAGGCAACAGGCTGAGAAGGAAAACCCCCAGCACGGACCTCAACATAATATGCAAATCAGACGGCAGCATTATAAGAGTCAGGGAGGTGCCAGCAAATCTGTCAAGGGATCGCGAACAGCACGAACACCCAGCAGACAATAAAGAAAGTGTTATTAAGCTGTTAATTAACACTTTCTTCAGAGCAGACCACGAAACAAAGGCTGGGCTAAAACAAGGCGGCTGAAAGACCCTCACATAGAGTCTTGTACTCTGGACAGGATATCATCATATACTGTAAGTTCGTTATAGAGACACTACAGTATAGATGATGTACTATCCAGGGTTTCATTCGTCCACAACATGACGCGGTCCAAACGGCCCCACACAGACGGAAATGGACACCCGGTGACCGAGAGCGGCGATCAAACCGTTACCATTACTGAGCTTTAGTAATGGTAAGGGTTATGTTGCCTCTTCTCAAAAGCTTCAGTCAAGAAGACCACTCTAATCACCTTCTCAACACTTGTAAATGTAAGACCTGGTGAAGTGCGATTACAAAACGGGTAAAAATatgatgtgttgttgttttccttgtttgtttttaaataaataaaaaattaagccAAATCTTTTCACGGTGATTATTTACAAGCTCTGTACAGTGATGAAggagaaaatacacacacagtcttaTCTGCGAAGTGTGGAAGTGTAAGGGCAATGTGCATGAAGAGGCAGAATGGTATACATCTAATAAAAGGATGTGTTAACAAATCTTCCGGAACATTTTAGTgtaagattaaaattaaatgttgaaagtGGCATAATGTGAACGAAATAAAAATCCAATTCTTATTAAAACCTCTTCTGTTGGAAGCGAGATTAAcggattaaaaaaattaaaaggccTTAAATGGCATCCTTTTCAGTGCGAGATGCCACAGAACATAAAACAGCCAATGAAG
>TU193199
TCGCGAACAGCACGAACACCCAGCAGACAATAAAGAAAGTGTTATTAAGCTGTTAATTAACACTTTCTTCAGAGCAGACCACGAAACAAAGGCTGGGCTAAAACAAGGCGGCTGAAAGACCCTCACATAGAGTCTTGTACTCTGGACAGGATATCATCATATACTGTAAGTTCGTTATAGAGACACTACAGTATAGATGATGTACTATCCAGGGTTTCATTCGTCCACAACATGACGCGGTCCAAACGGCCCCACACAGACGGAAATGGACACCCGGTGACCGAGAGCGGCGATCAAACCGTTACCATTACTGAGCTTTAGTAATGGTAAGGGTTATGTTGCCTCTTCTCAAAAGCTTCAGTCAAGAAGACCACTCTAATCACCTTCTCAACACTTGTAAATGTAAGACCTGGTGAAGTGCGATTACAAAACGGGTAAAAATatgatgtgttgttgttttccttgtttgtttttaaataaataaaaaattaagccAA

Function

GO:

id name namespace
GO:0019825 oxygen binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005647 True 1779 mRNA 0.39 2 6434521 6437078
TU193199 False 497 lncRNA 0.42 2 6435464 6436739

Neighbor

gene id symbol gene type direction distance location
AMCG00005649 flot2,LOC103133852 coding upstream 10168 6400618 ~ 6424353 (+)
AMCG00005650 dhrs11,LOC107562199 coding upstream 46028 6376102 ~ 6388493 (+)
AMCG00005637 NA coding upstream 76873 6355933 ~ 6357648 (+)
AMCG00005635 ggnbp2 coding upstream 80207 6344912 ~ 6354314 (+)
AMCG00005636 NA coding upstream 91099 6340924 ~ 6343422 (+)
AMCG00005648 fam222b coding downstream 30532 6467610 ~ 6476823 (+)
AMCG00005666 emc6,LOC107553592,LOC107552561 coding downstream 71207 6508285 ~ 6508617 (+)
AMCG00005670 NA coding downstream 83774 6520852 ~ 6527544 (+)
AMCG00005668 NA coding downstream 114626 6551704 ~ 6560667 (+)
AMCG00005669 LOC107676655,LOC107718355,LOC107680877,LOC107553589 coding downstream 131009 6568087 ~ 6570099 (+)
G153390 NA non-coding upstream 40793 6333252 ~ 6393728 (+)
G153381 NA non-coding upstream 103150 6282988 ~ 6331371 (+)
G153348 LOC107090330,LOC102220786 non-coding upstream 200474 6232159 ~ 6234047 (+)
G153312 NA non-coding upstream 386083 6048130 ~ 6048438 (+)
G153274 NA non-coding upstream 479070 5916835 ~ 5955451 (+)
G153485 NA non-coding downstream 123821 6560899 ~ 6563478 (+)
G153626 NA non-coding downstream 665127 7102205 ~ 7157875 (+)
G153687 NA non-coding downstream 860056 7297134 ~ 7297381 (+)
G153689 NA non-coding downstream 861076 7298154 ~ 7298512 (+)
G153702 NA non-coding downstream 923306 7360384 ~ 7361317 (+)
AMCG00005583 LOC106603777,LOC105895333,LOC108428505 other upstream 1192745 5214813 ~ 5241776 (+)
AMCG00005546 acaca,LOC107691719 other upstream 1871501 4560213 ~ 4563020 (+)
AMCG00005538 NA other upstream 2129365 4282517 ~ 4305156 (+)
AMCG00005498 lyrm9,LOC102789908 other upstream 3163677 3266374 ~ 3270844 (+)
G152588 rpl23a other upstream 3584913 2845217 ~ 2849608 (+)
AMCG00005667 NA other downstream 50640 6487718 ~ 6488782 (+)
AMCG00005663 NA other downstream 171565 6608643 ~ 6662480 (+)
G153675 NA other downstream 823599 7260677 ~ 7265971 (+)
AMCG00005694 NA other downstream 869980 7307058 ~ 7334571 (+)
AMCG00005660 LOC106603524 other downstream 1312105 7749183 ~ 7787871 (+)

Expression


Co-expression Network