AMCG00005651


Basic Information

Item Value
gene id AMCG00005651
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 6433714 ~ 6442366 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005651
CAAGATGTCTGCGCCCACCACATAACGTGAAAGTGTGGTAAACAAACATGACAGCGCCAATAACCTTGCATTTCTAGTTCATTTAGATCCCAGCAGTACATCTCTTACAACAGTCGTGCAGATTTGGAGAATAATCGCCGAGAATGACTTTACGTTTCTGCAGTCTGCTATTTCAAAGACGGTTTGCTATTTCCACAGTTGTGAATGCGTCACCGTTTCTCAAATCAGGCGGCCTTCAGCGCAGTGATGCCGGCCAGACTCCTCTCCGCGTCCCAGCCCGGTCCTGCGCCACGGAGACGGGGAGTCCTATCGGTGCCAGAGAAAAGGAGGACAGCTTTTGTCTCCCTGTGCCCTCGGTTTCCCCTAATAAAGCTGAACAACAGACTTTGCTGGTCAACTGTCCAGATCAACCAGTGAATCCAAAGGTATTGAAAGTGGCGATCGTCGGAGCCCCTAACGCAGGGAAGTCAACATTATCCAACCAGCTTCTCGGAAGAAAGGTGTTCGCCGTGTCAAAGAAGGTGCACACGACGCGGTCCCGTGCTCAGGGCGTCATCACTGAAGAAGACACGCAGCTGattttgttgGACACTCCCGGACTCACCACTCTTTCAAAAGTGAAGAGGCATCACCTGGAAAAGTCTCTTCTTGTGGATCCTTCCAACACTCTCCAGGAAGCTGATATAGTACTGGTTCTGGTCGATGTTTCGGACCACTGGACCCGTGACAGACTGGCTCTCGAGCTGCTGAAGTGTCTGGGCCTGAATCCCCACATCCCTGCAGTTCTTGTGCTTAACAAGGTGGATTTGTTGAAGAACAAGACCCTTTTGCTGAACCTCACGTCAGAGCTGACCGAAGGGACGGTAAACGGGAGAAAACTCGACATCAGGACTGTTGTGAAGACGCCCAGGGGGAGGAATTACACCCCTCGTAGAGAGCTGGACACAGGGACCTGGGGGGAACCGACAGCCAAGCGTGGCTGGCCGCATTTCCAGGATGTGTTCATGCTGTCCGCCCTGGACGGGGACGAGGTGGAAACGCTCAAGAGATACCTGGTATCGGTGGCCAAACCTGGACCTTGGCTGTACCACAGCGAGGTGCTCACGGATCAGAACCCCGAGGAGATCTGCATTAACATGGTCCGGGGGAAGTTACTGGAGCATCTGCCCCAGGAGGTGCCTTACAACATATCCCAGAACATTGAGATTTGGGAGGAAGGAAAGAACGGGGAGCTACACATCCATCTGGCACTTTATGTGAAGAAAGAAAGCCACATGAAGATGCTGATTGGGCTGGGAGGTCAGACGATCAGCAGGATCGCCCGGGAGGCTGGCGGGGACCTGATGGACGTGTTCTTGTGTGACGTCAACGTGAAGCTTTCTGTCAAACTGAAGAAATGAGGCCCGTGAGGAGGATAGTTTCAGGAACCGCTCGTGCCCCGGCCCGTCCGACACCGCGGTTTCGGAGACCAGCGCACTGTCATCGTTCAACACAGTCTTGCAGCGGCGGTATTGTTTCTACCAGAGCAAGTGTGGGTTTTAATTTGCTCCCACACACCCAAAAGAACAGGCACAGACAGTTGCTCTAAGCAGGATTGCGATCACGGTGTATTACCAAAGTGTGAACGTGGCAGTTTATAGTGTTACCTGATTTTGCATCctgttgttattttcagttgTCACCACTTGGATTATTTACCATGCTAACTATTTTAAGAGAGTTATAAGACCacaaagaagaggaaaaaaactaaatctctAGGCTTAAACGTGAGGAAGTTGAGAAGTAGAAGTTTCTGGGTGCTGCATGTCCTTTAACGCATACCTGCTTTGTTGGATGGGCTTCAGAGGGCTGCGTCTAATGGCAGAGCGGTGTGTGTCATTGCTTTTCCTGGAACAGCCAGAGAACAAACAGACCCTGGCAAGGCAAGAAACGGATTCGTGGGAAAGCGAAAATGATGCAGTTCTCCCCAGAGCACCAGTTTGGGGTTACGTGGAGGTGGCGGGGGTGCGGTGATCAATACTGCGAGTCTGGGAGGGGGAAGGAGGCTCAGTTAGGGAGGCTGGGCTTTATCTGTCCTCCCCCAGCTCTTGAAATCAGCCCCGCAGCAACAGTGGGCCACTAACCTGGCTGTctgcagataaataaattagGAATCCTCCAGTTATGCGCTGTGgcacctcccccctcccccgtctccctctctccgtctctgaGAGCAACGGCTGATAAAGACACCCGGGGCAGAGAACTCAAATCGCCTCCCTAATGGAACCGAACCTGCCGAACAGATGCAATTTGAAACGTTTTTTATTCCCTTCCGCTCTCAGTTTATAGCTGCTCTTTCAAGGGCATCTTGATGAATGAGGGAGGAATTAGTTCTCTAAAGCAAGGCCTTCGGAGCCGCATTTCTGAAACGCTGTTCCACTCCAGGTTGACCAAGTAAACGGTAGCTTGACTTTTCGGGGGCCCAAAATAacaattgattttgtttcagcCTTGTTGAGAGAGATTTCACATCCGAACTTAATTATAAGGCCTCGCTGGCGTTCCCTGGACTCAGTAGCAGTGAAAGGGGTAATTGCAAATATTCACTTGTTTGAAATATTGATTTCCTATTGTGAACGCGAAGACACCTCCCTGGGACAAACATATCGATCTGCGAACCCCCGGAAAGCCAGTCACAATCGggatatttaatgtataatctGTATAGCTGATATTGTAACACTTATTTCCACGTGTAATGATGTGAATGCCTGTTCATTGaagcttattttgttttgctactgttaatttaaaacaaagtggcAGTTGTAGTGGAAGGCGAAACAACAGGACGAGTCACAAGATATTCCTTTCCTGTTTGCATCACCTTGGTGATTTTGCTGCCCTTCAGaaataaaccaacaaagaaaaagacaacactCTGGTGCAAACTTTCACGACTGGATATCTGCATATTGGGGACATTTCTAGATCGACACAAATGAAGAGTGGTACTGAGGGTCTTTTATGTAAAACCTGTGATGCTAAATTCATCTACCATTCCTATATTTTgtagatattaaaaaatactggTATCCCAACAGTTGTGGCTTTTGTAGATTAAGTTATTGTATAGGTTCGTATACGTGCTatctaatacatttatacaatttaacAGTGATGCATCTTAAAGCCCTGAtggtaatattaaaaaaaaaaatgttatgctgtacttttaaaatatatttataaataatcaaaaacaccTTGGAAAAATACACCGGGAACTGATCTTCTGGAAATACCCAGTATTAAAAATGCGCCATCTTCATTTCATAATGGAACTCCTGAGTAtttgagaataaaatgtaaatcgATTGAGAATGAATTATACCAGGCAAAGCTGCGGTGTGAATTGCCCTGCCTCGGAGCGCTTTCTGTGGGATGCTTCATTGGCTGTTTTATGTTCTGTGGCATCTCGCACTGAAAAGGATGCCATTTAAggccttttaatttttttaatccgTTAATCTCGCTTCCAACAGAAGAGGTTTTAATAAGAATTGGATTTTTATTTCGTTCACATTATGCCactttcaacatttaattttaatcttacACTAAAATGTTCCGGAAGATTTGTTAACACATCCTTTTATTAGATGTATACCATTCTGCCTCTTCATGCACATTGCCCTTACACTTCCACACTTCGCAGAtaagactgtgtgtgtattttctccTTCATCACTGTACAGAGCTTGTAAATAATCACCGTGAAAAGATTTggcttaattttttatttatttaaaaacaaacaaggaaaacaacaacacatcatATTTTTACCCGTTTTGTAATCGCACTTCACCAGGTCTTACATTTACAAGTGTTGAGAAGGTGATTAGAGTGGTCTTCTTGACTGAAGCTTTTGAGAAGAGGCAACATAACCCTTACCATTACTAAAGCTCAGTAATGGTAACGGTTTGATCGCCGCTCTCGGTCACCGGGTGTCCATTTCCGTCTGTGTGGGGCCGTTTGGACCGCGTCATGTTGTGGACGAATGAAACCCTGGATAGTACATCATCTATACTGTAGTGTCTCTATAACGAACTTACAGTATATGATGATATCCTGTCCAGAGTACAAGACTCTATGTGAGGGTCTTTCAGCCGCCTTGTTTTAGCCCAGCCTGAAATAAAGCCAAAacacatcaaattaaaacaccTGTAAAGactaattaattgtatttattataattctttCCCTACACATTTGAATAAGGACATGAACCTGTGGGTCTAAGCATGTTTACTGATAGCACCAAgtaatgatcattattatttgcacGAATATCATGCTCATGTGAGAGCATGTTAAACATCAGTCCCTTGCACTTTTACATGGGAGCTGAGAATGCAAAATTAAccactaaacaaaaaaatgaccTCTTTTGTATTATTCCAAATACTATGCATTAGGCGGTTGTTTTTAGTATCTGCAGGCTTGTCCCTTCCaagaaaagggaaatgaaaCTGTTGCAAGCAAAGCAAGAGCCTGAATCACATTTAGGAAACAACAGAAATATTgtaaaagaaggaaaaacttTACAAAGataggtttaaataaatacatttatatgaaatacaaaatataatgggGGCTaagtcataaaatgaaaacctgtCCTGTGTGCCCGGTTTCAGCTCTAAACCACAATTTCAACGATCTGTATCGAATTTGCATTGCACAGTGCATGCTATTCAGCCTGGCTGTCCTACATAACGGCTGTAAACATGCCTTCTAACAGTTAGAAAGCTTCCtaacactgtgacacacacattcAAGCAACcctttgaatttattttattattattattattatcatagcACATCCCCATAGATACCTGTGGATCACAGAGGAAGCCTTTAACTTCTTTGAAAGTTATATTGACTAGTTTAAACACTCACCTTTGTTTCGTGGTCTGCTCTGAAGAAAGTGTTAATTAACAGCTTAATAACACTTTCTTTATTGTCTGCTGGGTGTTCGTGCTGTTCGCGATCCCTTGACAGATTTGCTGGCACCTCCCTGACTCTTATAATGCTGCCGTCTGATTTGCATATTATGTTGAGGTCCGTGCTGGGGGTTTTCCTTCTCAGCCTGTTGCCTGCGTTGGACCAATGACAGTCCTGAACGCTATCAGAGACCAGACACTTTTCAAAACATCACAATCCACCATCCCATCTGGGCTCATGTCGTCAATTCTCTTTAATTCCCCTCTCATTTTAAGAAAAccaatatttgtttattacttTTGATGCAACATTATGTGCAAAGCCAATATCGTTTTTGGTTGTTGCTCTGTAATCACGACAAGGCTTTTAAACTGGTAAAATTGTAATTCTCATGGTGGGCTGCTGTTCTATTATATTCAGGATcaatgttcatatttaattaaatcacacaCTGAGAAATACAAGAGCAGGTGAAAGTAACAGGATTGTGTAATTGACACACAAATGAGTTCCCATCTACCTGCCCTCACACACTCACCATTCATTCGCAAGAGTTTGGGATACTGCAGGTTTCCTGTACTTAGTTAACATACATCTGTAAAACAAACTCACCTCACATTAGCTACCGATATATTTATGGTTTTACACCGAGAGAAGCTACTCAGTCTTGAGCCTCTTTATGAAGACGCcctggaacaaaataaaatgtcccgACCAACTTGGATTTATAACTTTGAGTGAATATGTCAGTGTAATGTTTCTGTGTCTGCTGGAGTAAATTAGTTTAGAGCAAACAGGCCAGATTCACAAAACTCTTCCATGTgtcttaaaacaacaaacacatatttcacCTTGCTCTCATTTGGAGTCATTTTACCAGTAGCCTGATAAGTACTAGAATGAATGGATTTAACCACAATTGGGGATAAATGTGTAaatttgcttttattgtattttgtttcttgaaatatgtatattttgtaaatcccATTGGGTAAGACCATCTGCTAATCagtgaataaataagtaatagtAGAGCTTTATTGTTGTTAGTTGTTGCTGTGgtataaacatgcattttctccattccttcctctctctccctctctctatacatatatataatattctttctttatatttttattttaaatcagtttgcTTTACTCATTCACATATTACACAATATCGGCACAGACGTATTCATACATAATTAAGCACAGATAGGGGAGTTAAAATAAAGTCCAGGCAGCACTATATGTTATTTATTGGACGTGTTTCTTAAAATCGGTCCTAGGGTAGCAATGGGGTGATTCGATCATTTCTACAGTTTGCTGCTCTTCTGTGTTTGCATCTGATGAGTTTTCCTAGCATCAACTGCACCAAATACGAGTGGAGCTTCTCCATTCAATTGCTTTCTGTTCTTCCAATTCAAGGCTATAAGACGTTTTGTGGTCATCAATCTCTTGTAATCAATCTCTTCTGGGATTTATCACAAGCAACTTCCTCTAAATAATTAACAGGCCTATCTTGGGGTCCAGTGGTACCTCACACCCGTGGTTTTGGATAAAGTATCTATGTCCATGGTCCAGTATCCCACCAGCTTTGGGCAGTGTCATATCATATGAATAAATAACCCTTTGCCAACTCATGTCAGACTCGCTAGTCTTCCTTGGTTTGGGTTTTTTTGGTGTAGTGTAAACTGCGTACGAAcgtataatttatttctcacagAACTGGAGATTTAATGCATAACTCTCCGTGTCACTCACACTTCAGGACTCCACTGTCCACAT

Function

GO:

id name namespace
GO:0042254 ribosome biogenesis biological_process
GO:0044429 obsolete mitochondrial part cellular_component
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K03595 era, ERAL1; GTPase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005651 True 6800 mRNA 0.43 11 6433714 6442366

Neighbor

gene id symbol gene type direction distance location
AMCG00005652 NA coding downstream 1417 6425603 ~ 6432297 (-)
AMCG00005653 LOC107387056,LOC104963922,LOC107090352,LOC103133851,LOC106956654 coding downstream 35205 6390296 ~ 6398509 (-)
AMCG00005641 myo19 coding downstream 93881 6334287 ~ 6339833 (-)
AMCG00005639 NA coding downstream 104719 6326196 ~ 6328995 (-)
AMCG00005640 NA coding downstream 116651 6309556 ~ 6317063 (-)
AMCG00005673 NA coding upstream 38700 6481066 ~ 6486250 (-)
AMCG00005675 NA coding upstream 54994 6497360 ~ 6497661 (-)
AMCG00005671 NA coding upstream 60087 6502453 ~ 6527620 (-)
AMCG00005672 NA coding upstream 86201 6528567 ~ 6545880 (-)
AMCG00005665 NA coding upstream 128691 6571057 ~ 6575631 (-)
G153379 NA non-coding downstream 176542 6240402 ~ 6257172 (-)
G153375 NA non-coding downstream 198305 6235183 ~ 6235409 (-)
G153374 NA non-coding downstream 198856 6234548 ~ 6234858 (-)
G153373 NA non-coding downstream 199355 6234128 ~ 6234359 (-)
G153324 NA non-coding downstream 364700 6068787 ~ 6069014 (-)
G153487 NA non-coding upstream 118573 6560939 ~ 6563570 (-)
G153514 NA non-coding upstream 204950 6647316 ~ 6662496 (-)
G153586 NA non-coding upstream 493064 6935430 ~ 6935676 (-)
G153638 NA non-coding upstream 610439 7052805 ~ 7053559 (-)
G153678 vmp1,LOC105021956,LOC107728773 non-coding upstream 737262 7179628 ~ 7202286 (-)
AMCG00005628 LOC107090330,LOC102220786 other downstream 199686 6232159 ~ 6234028 (-)
G153342 NA other downstream 350848 6081235 ~ 6082866 (-)
G153130 NA other downstream 1131516 5300769 ~ 5302198 (-)
AMCG00005539 NA other downstream 2140843 4284717 ~ 4292871 (-)
AMCG00005560 LOC106568075,LOC104946632,LOC106603282 other downstream 2564505 3850136 ~ 3869209 (-)
AMCG00005674 NA other upstream 47889 6490255 ~ 6496571 (-)
AMCG00005685 NA other upstream 666852 7109218 ~ 7145807 (-)
G153733 auts2 other upstream 1343188 7785554 ~ 7788321 (-)
AMCG00005704 NA other upstream 1556970 7999336 ~ 8001405 (-)
G153806 NA other upstream 1649382 8091748 ~ 8124685 (-)

Expression


Co-expression Network