AMCG00005652


Basic Information

Item Value
gene id AMCG00005652
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 6425603 ~ 6432297 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005652
ATGAGCCGAGTAGGGAATCGATTCGATATGAGCACATCGGCGGCCACGTGTTCCTGGCATAGCGGCATCAGAGCCATCAAGACCCCAAAGTGCCGCTCCGGAGGCCCCGGGGAGCCGCAGACCGAGGCCCCCGCCCCGCACACCCGGGCGTCGCTGCAGGACCGGCAGCTGTGGGACAAATTCAGCGGCTGCGGCACAGAAATGATCATCACGAAATCGGGGAGGCGGATGTTTCCATCATGCAAAGTGAGCTTATTGGGCCTGAATCCGAAGGCCAGGTATCTGCTGATGATGGACATGAGCTCGGGTAATCGGGCCCTGAGAGGTCCGGCTGTACAGTTAAACATGAGGGACCACCATGAGACTTGCTATGGTCCTCACACAGTCTGTGCTTccttccctccccaccccccgcAGTGGAACAAGGACAGGTGGGAGATGAGCGGGGTCGCCGAGCCCCACCTCCCCAACAGGTTCTTCATCCACCCCGAGTCGCCTGCGCTGGGGGAGAAGTGGATGCAGTACCCCGTGTCCTTCCACAAGCTCAAGCTCAGCAACCACACACTCAATACCAACGGCCTGGTTATCCTGCACTCGATGCACAAATACCAGCCTCGCCTCCACATCGTCCAGGCGGCTGACCTCTCCAGCCAGCACTGGGGGGCGTTCCAGCGCTTCACGTTCCCCGAAGCCGCTTTCATCGCTGTGACAGCCTACCAGAACCCCGAGATTACAAAACTCAAGATAGAGAACAACCCTTTTGCTAAAGGCTTTCGCGATTATGGGCTAAACTGCAAAAGGCACCGGGAACGGCGAGTCCAGAGCTCTTACAGCCAGCCACTTGGAAACGCAGAGCAACAACATTCGGAGGCTGCTGGATCAAAGGCTACGGAAGCGAGGGATGAAGCAGACTCCATGGTCTCCAGTACCGAAGACTGTCACACTGCAGAAAGCATGGCCGCCAACCCCTTCATATCGGCATTTATAAAGAGAAGCGGGGTCCACAGTGCGTATGCCCGGGATGACTGGACCGAGGTCTTCAGGTGTCCTTCGCCCAACAGCCAGGACTCCATAGCTGTCCGACATGATCTCAGcagcagcagcaacagggCTCCCTGCATCACCGAGCTCCCTGCCACCACCACCGCCATCTCTGCGAAAAggccccaccaccaccaccagccagCCCACTCCCTGGACTTCCTgctccccctgccccccaagGTCAGCCGGGTCCACCTTCCCGAGAGCGCCCTGAGGAGCCTGGAGACGACCGGGGCCTCTCCTCTGGGCGCCGGCGCTCCCCGCCCCCTAGCAGACATCTTGAACAAATTCCACGATAAACCGGACTCCATCCTGGGCAGCCCGGGGAAGTTTCCCCCCTGGTACTCTCTGGGGCTCGGCAGGGATGGCCTCGCACTCTCCTACCCCCAGGAGGGCAGCAGCACAGCCCTGAGTCCAGCAGGGCTACTGGGATACCTGAACAGCACGACGGCTGGAGCAGTGCCTGGCCTCTTGGACCCCCAAGTGAACCCACTCAACACAGCGCCCTTGGAGAACCAGTGCAGAACACCACGGTTAGACTTTCATTCCAGCGTGTATCTGGGGAAGTGA

Function

GO:

id name namespace
GO:0021523 somatic motor neuron differentiation biological_process
GO:0001756 somitogenesis biological_process
GO:0048514 blood vessel morphogenesis biological_process

KEGG:

id description
K10180 TBX6; T-box protein 6

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005652 True 1614 mRNA 0.60 10 6425603 6432297

Neighbor

gene id symbol gene type direction distance location
AMCG00005653 LOC107387056,LOC104963922,LOC107090352,LOC103133851,LOC106956654 coding downstream 27094 6390296 ~ 6398509 (-)
AMCG00005641 myo19 coding downstream 85770 6334287 ~ 6339833 (-)
AMCG00005639 NA coding downstream 96608 6326196 ~ 6328995 (-)
AMCG00005640 NA coding downstream 108540 6309556 ~ 6317063 (-)
AMCG00005642 NA coding downstream 116072 6305833 ~ 6309531 (-)
AMCG00005651 NA coding upstream 1417 6433714 ~ 6442366 (-)
AMCG00005673 NA coding upstream 48769 6481066 ~ 6486250 (-)
AMCG00005675 NA coding upstream 65063 6497360 ~ 6497661 (-)
AMCG00005671 NA coding upstream 70156 6502453 ~ 6527620 (-)
AMCG00005672 NA coding upstream 96270 6528567 ~ 6545880 (-)
G153379 NA non-coding downstream 168431 6240402 ~ 6257172 (-)
G153375 NA non-coding downstream 190194 6235183 ~ 6235409 (-)
G153374 NA non-coding downstream 190745 6234548 ~ 6234858 (-)
G153373 NA non-coding downstream 191244 6234128 ~ 6234359 (-)
G153324 NA non-coding downstream 356589 6068787 ~ 6069014 (-)
G153487 NA non-coding upstream 128642 6560939 ~ 6563570 (-)
G153514 NA non-coding upstream 215019 6647316 ~ 6662496 (-)
G153586 NA non-coding upstream 503133 6935430 ~ 6935676 (-)
G153638 NA non-coding upstream 620508 7052805 ~ 7053559 (-)
G153678 vmp1,LOC105021956,LOC107728773 non-coding upstream 747331 7179628 ~ 7202286 (-)
AMCG00005628 LOC107090330,LOC102220786 other downstream 191575 6232159 ~ 6234028 (-)
G153342 NA other downstream 342737 6081235 ~ 6082866 (-)
G153130 NA other downstream 1123405 5300769 ~ 5302198 (-)
AMCG00005539 NA other downstream 2132732 4284717 ~ 4292871 (-)
AMCG00005560 LOC106568075,LOC104946632,LOC106603282 other downstream 2556394 3850136 ~ 3869209 (-)
AMCG00005674 NA other upstream 57958 6490255 ~ 6496571 (-)
AMCG00005685 NA other upstream 676921 7109218 ~ 7145807 (-)
G153733 auts2 other upstream 1353257 7785554 ~ 7788321 (-)
AMCG00005704 NA other upstream 1567039 7999336 ~ 8001405 (-)
G153806 NA other upstream 1659451 8091748 ~ 8124685 (-)

Expression


Co-expression Network