AMCG00005653 (LOC107387056,LOC104963922,LOC107090352,LOC103133851,LOC106956654)


Basic Information

Item Value
gene id AMCG00005653
gene name LOC107387056,LOC104963922,LOC107090352,LOC103133851,LOC106956654
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 6390296 ~ 6398509 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005653
ATGCAGGAAACAAATGGGGGAACCTTGGACACTGAACTGGTGAAGGAAGGGGGACTGAAAAGGCCGACATGGAACCGGCAGATAGAGTTCACCCTGGCTGGCATAGGAGCTGCTGTTGGGCTGGGGAATATCTGGAGATTCCCTTATTTATGTTACAGGAGTGGTGGAGGGGCCTTCCTGGTGCCCTATATCATCATGCTGGTTGTGCTGGGGATCCCTCTTCTGCACATGGAGCTGGCGGTGGGTCAGTACCAGCGGCTGGGCCCAGTGCACGCCATGGCGAACGTCTGTCCTTTACTGAAAGATCTCAAGAATTACAGAGTGCTGGAGCGGACGTCCGGGGTGGAGGAGGCTGGGACACTGCGCTGGGAGCTCTTCTGTCTGCTCCTGGTGGCCTGGATTCTCGTTTATCTGTGCATCTTCAAAGGTGTCAAATCCACTGGCAAACAAGGTTGGCCGGGGTCGTCTCTGTATGCCATCCTATTACGATGGAGAAAGGCGCTGCCGTTCTCGGTGCGTTTGGTGATACTGCGTGGTGAGCGCACTCTCTCTACCCTGCAGGTGTGGGTCAATGCTGCCACCCAGATCTTCAACTCCATTGGCATTGCCTTTGGGTCCCTCATGGCAATGGCCAGCTACAACTCCTTCAACAACAATATCTTGAAGGACACTCTGGCCATCTCCATCACTAACTCTGCCACCAGTATCCTAGCCGGCTTTGTCATCTTCTCCGCGTTCGGCTACATGTCACACACCATGAACGTGCCGATCAGTGACATCGCTGTGGATGGTCCAGGCCTTGTTTTCATAGTTTATCCACAAGCCTTTCCGACGATGCCCGTGGCTCCTCTCTGGGCGGTTCTGTTTTTCATCATGCTGCTCTGCCTGGGGCTCGACAGTCAGTTCGCCATGGTGGAGGTGATGGTGACCAGTGTCATGGATGACTTCGGGAAGCCGTTGCTGAAGTATCTCAGACGGAAGGAGTTCATCGTCCTCGTCGTCTGCTGCATGGCCTTCCTCTTAGGCATCCCTCACGTGATGCAGGTGGGAATTTACACCTTCCAGCTCATGGACCACTACACTGCCATCGTCTCCATCATGTTCCTTGCCTTTTTCGAAGTGGTTGGGATTTGCTGGATCTATGGGGTCAGACGTCTTTCCCAGAATGTGGAGGAGATGACGGGAAAGAAACCAAACATCTTTTTCACTGTCTGTTGGACGGTCGTATCCCCGCTGCTGGTCACAGTGATCCTGATTTTCTCCATCATTCAGTTTAAACCAGCGCGCTACGAAGGCTACGTGTACCCGCCTTGGGCTCAGGGAGTGGGCTGGGTCATAGCTATGGCGTCCATCATCTGGATTCCCCTGGGAGCCGTCCACACCCTGTGGAGTCTGGAAGGGTCGTTCTTAGAGGTAACATCGCTGTAg

Function

NR:

description
PREDICTED: sodium- and chloride-dependent GABA transporter ine-like

GO: NA

KEGG:

id description
K03308 TC.NSS; neurotransmitter:Na+ symporter, NSS family

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005653 True 1428 mRNA 0.54 11 6390296 6398509

Neighbor

gene id symbol gene type direction distance location
AMCG00005641 myo19 coding downstream 50463 6334287 ~ 6339833 (-)
AMCG00005639 NA coding downstream 61301 6326196 ~ 6328995 (-)
AMCG00005640 NA coding downstream 73233 6309556 ~ 6317063 (-)
AMCG00005642 NA coding downstream 80765 6305833 ~ 6309531 (-)
AMCG00005638 NA coding downstream 93349 6288469 ~ 6296947 (-)
AMCG00005652 NA coding upstream 27094 6425603 ~ 6432297 (-)
AMCG00005651 NA coding upstream 35205 6433714 ~ 6442366 (-)
AMCG00005673 NA coding upstream 82557 6481066 ~ 6486250 (-)
AMCG00005675 NA coding upstream 98851 6497360 ~ 6497661 (-)
AMCG00005671 NA coding upstream 103944 6502453 ~ 6527620 (-)
G153379 NA non-coding downstream 133124 6240402 ~ 6257172 (-)
G153375 NA non-coding downstream 154887 6235183 ~ 6235409 (-)
G153374 NA non-coding downstream 155438 6234548 ~ 6234858 (-)
G153373 NA non-coding downstream 155937 6234128 ~ 6234359 (-)
G153324 NA non-coding downstream 321282 6068787 ~ 6069014 (-)
G153487 NA non-coding upstream 162430 6560939 ~ 6563570 (-)
G153514 NA non-coding upstream 248807 6647316 ~ 6662496 (-)
G153586 NA non-coding upstream 536921 6935430 ~ 6935676 (-)
G153638 NA non-coding upstream 654296 7052805 ~ 7053559 (-)
G153678 vmp1,LOC105021956,LOC107728773 non-coding upstream 781119 7179628 ~ 7202286 (-)
AMCG00005628 LOC107090330,LOC102220786 other downstream 156268 6232159 ~ 6234028 (-)
G153342 NA other downstream 307430 6081235 ~ 6082866 (-)
G153130 NA other downstream 1088098 5300769 ~ 5302198 (-)
AMCG00005539 NA other downstream 2097425 4284717 ~ 4292871 (-)
AMCG00005560 LOC106568075,LOC104946632,LOC106603282 other downstream 2521087 3850136 ~ 3869209 (-)
AMCG00005674 NA other upstream 91746 6490255 ~ 6496571 (-)
AMCG00005685 NA other upstream 710709 7109218 ~ 7145807 (-)
G153733 auts2 other upstream 1387045 7785554 ~ 7788321 (-)
AMCG00005704 NA other upstream 1600827 7999336 ~ 8001405 (-)
G153806 NA other upstream 1693239 8091748 ~ 8124685 (-)

Expression


Co-expression Network