AMCG00005654 (abr,si:ch211-253h3.1,LOC103375456)


Basic Information

Item Value
gene id AMCG00005654
gene name abr,si:ch211-253h3.1,LOC103375456
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 6787860 ~ 6800839 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005654
ATGACGGATGTCCTGGTGGCCGACTGCAATTTAAACTCGGTGTCTGAACGTTTAGAGCATTGCTGTCTGGAGAACAGCATCGAGGAGCCTCCTTCCAAGAGACACTCCAACACCGGGGCCAAGCTGTGGGGTCGTGTCCGAAGCAAGCTGCTCAGACAAAAGCTGGACCCCCAGACGGTGCAGTCCAAGAACTGGCACATGGATGTAATAGAGATGAACGGGATCAAAGTGGAGTTCTCCATGAAGTTCACGACTCGGGATTTGAGTTTGAAGAGAACGCCGTCTAAGAAGCAGAGCGGGGTGTTCGGGGTCAAGATCAGCGTGGTCACGAAGCGGGAGCGCTCCAAGGTGCCTTACATCGTCCGCCAGTGCATTGAGGAGGTAGAGAAGAGGGGGATCGAGGAGGTGGGGATATATCGCATCTCCGGTGTGGCGACGGACATCCAGGCCCTGAAGGCGGCGTTTGACACGAATACCAAAGACATCCTGGTGATGCTGAGCGACATGGACATCAACGCCATAGCAGGGACCCTGAAGCTGTACTTCCGAGAGCTGCCGGAGCCCCTCCTCACCGACCGGCTGTACCTTGCCTTCATGGAAGGAATAGCTCTCTCAGACCCGGCTGCCAAGGAGAACTGCATGATGCACCTCCTGCGGTCGCTCCCTGACCCCAACCTCATCACGTTCCTCTCCCTGCTTGAGCACCTGAAGAGAGTCGCAGAGAAGGAGCCCATCAACAAGATGTCCCTCCACAACCTCGCCACGGTCTTCGGCCCCACACTGCTCCGGCCCTCGGAGGTAGAGagcaaagcacacatcagcctGGCATCGGACATCTGGTCACATGACGTCATGGCGCAGGTCCAAGTCCTGCTCTACTACCTGCAGCACCCCCCCATCTCCATCACCGAgctgaagcgcaacaccctgTACTTCTCCACCGACGTGTAG

Function

symbol description
abr Predicted to enable guanyl-nucleotide exchange factor activity. Predicted to act upstream of or within intracellular signal transduction and positive regulation of GTPase activity. Predicted to be located in cell projection and synapse. Predicted to be active in membrane. Orthologous to human ABR (ABR activator of RhoGEF and GTPase).

NR:

description
active breakpoint cluster region-related protein isoform X4

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component

KEGG:

id description
K20643 RGD1; Rho GTPase-activating protein RGD1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005654 True 951 mRNA 0.57 8 6787860 6800839

Neighbor

gene id symbol gene type direction distance location
AMCG00005645 NA coding downstream 44639 6722947 ~ 6743221 (-)
AMCG00005646 NA coding downstream 75874 6706658 ~ 6711986 (-)
AMCG00005644 NA coding downstream 83500 6690451 ~ 6704360 (-)
AMCG00005664 NA coding downstream 192966 6582699 ~ 6594894 (-)
AMCG00005665 NA coding downstream 212229 6571057 ~ 6575631 (-)
AMCG00005655 abr,LOC107731041,LOC107688618,LOC107712163 coding upstream 25090 6825929 ~ 6872866 (-)
AMCG00005632 NA coding upstream 108479 6909318 ~ 6920861 (-)
AMCG00005631 NA coding upstream 123210 6924049 ~ 6931866 (-)
AMCG00005633 tmem211,LOC103045102,LOC108427286,LOC101167817,LOC106534416,LOC106603516 coding upstream 138973 6939812 ~ 6944352 (-)
AMCG00005678 LOC106567973,LOC106603516,LOC107685783,LOC107712159,LOC107595527 coding upstream 215709 7016548 ~ 7016940 (-)
G153514 NA non-coding downstream 125364 6647316 ~ 6662496 (-)
G153487 NA non-coding downstream 224290 6560939 ~ 6563570 (-)
G153379 NA non-coding downstream 530688 6240402 ~ 6257172 (-)
G153375 NA non-coding downstream 552451 6235183 ~ 6235409 (-)
G153374 NA non-coding downstream 553002 6234548 ~ 6234858 (-)
G153586 NA non-coding upstream 134591 6935430 ~ 6935676 (-)
G153638 NA non-coding upstream 251966 7052805 ~ 7053559 (-)
G153678 vmp1,LOC105021956,LOC107728773 non-coding upstream 378789 7179628 ~ 7202286 (-)
G153681 NA non-coding upstream 477665 7278504 ~ 7278765 (-)
G153742 NA non-coding upstream 1073948 7874787 ~ 7875042 (-)
AMCG00005674 NA other downstream 291289 6490255 ~ 6496571 (-)
AMCG00005628 LOC107090330,LOC102220786 other downstream 553832 6232159 ~ 6234028 (-)
G153342 NA other downstream 704994 6081235 ~ 6082866 (-)
G153130 NA other downstream 1485662 5300769 ~ 5302198 (-)
AMCG00005539 NA other downstream 2494989 4284717 ~ 4292871 (-)
AMCG00005685 NA other upstream 308379 7109218 ~ 7145807 (-)
G153733 auts2 other upstream 984715 7785554 ~ 7788321 (-)
AMCG00005704 NA other upstream 1198497 7999336 ~ 8001405 (-)
G153806 NA other upstream 1290909 8091748 ~ 8124685 (-)
G154142 NA other upstream 2289583 9090422 ~ 9092573 (-)

Expression


Co-expression Network