AMCG00005659


Basic Information

Item Value
gene id AMCG00005659
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 7281620 ~ 7292372 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005659
GTGCTGCGGGATATTGTTATGTATCCTGACTTTCTAGTTTAAATAGGAAATATAACTGCAGTGTTGTCTTGGGAAGTGCCACTGTTTACAAGATTCCCAGTTGACGCAGATGATGGAGAAACGTAAAAGCAAATCGTCCCTCAAAGGAAGTCTAATAAACGACTCAGAAAAGCTGCCGATTTTCCAGCACAAGGAAAAGCTGGTCCGGGCGGTGAAAGTCAACCCTTTCCTGGTTGTCACCGGAGAGACGGGCAGCGGGAAGACCACCCAGCTGCCCCAGTACCTGTACCGCGCAGGGTTTTGTAAGACCGGTACCATTGGCGTCACGCAGCCGCGCAGAGTGGCCGCCATCACGGTGGCGCAGAGGGTGGCGCAGGAGGTGGGCTGCAGCCTGGGCAGAGCAGTGGGGTACCAGGTGCGCTTTGATGACTGCACCTCCAAGGATACAGTTATTAAGTACATGACGGACGGCTGCCTGCTGAGGGAGATTCTGGCGGACACCCGTCTGCGGCAGTACAGCGTGGTCGTCCTCGACGAGGCGCACGAGCGTAGTCTGAACACAGATATCTTGCTGGGGTTACTGAAGAAGCTCTTCCTGGATGGCAAGGGTGGTGCAGGCCAGGCAGCCGCCCTGAAGGTGGTGGTGATGTCCGCCACCCTGGAGACCGACAAGCTGTCCGCCTTCCTGGGGAACTGTCCCGTCTTCGCCATCCCTGGGCGGACCTTCCCCGTGGCCGAGATATTCTGtgatctgattggccccaaggACACAGAGAGCTCGGTCTATGTGAAGGAGGTGGTGAAGGTCGCTCTGGAGGTCCACACCAGCGAGCCAGCAGGGGACATCCTCATGTTTCTGACTGGGCAAGCTGAGATCGAGAAGGCCTGCGATATCCTCTATCAGAGGGCCGAGTCCATAGATTACCACTATGACGTGCAGGACCGCTCTGTGGAGGGACTGCTGATTCTGCCCCTGTATGGATCTATGCCCACCGATCAACAAAGGCAAATATTTCAGCCGCCTCCCAATGGCGTGAGAAAGTGTGTGGTGGCAACGAACATTGCGGCCACGTCTTTAACCATCAATGGAATAAGGTATATAGTGGACAGCGGTTTTGTGAAGCAACTGAATCACAACTCCAGAGTGGGCCTGGACATCCTGGAGGTGGTGCCGATTGCAAAAAGCGAAGCACAGCAGAGAGCCGGCCGCGCTGGGCGCACGTCCGCGGGGAAGTGCTACCGGATCTACAGCAGGGAATTCTGGGAGAAGTGCATGCCCGAGTACATGGTCCCCGAGATCCAGAGGACCAGCCTGACCTCAGTCATCCTCACCCTCAAGTGCCTGGGAGTCCATGATGTCATCAGGTTCCCGTACCTGGACCCCCCCGAAGAGAGATTCATCTTGGAGGCCCTGAAGCAGCTGTACCAGTGTGATGCGATTGACAGGAGGGGCCAAGTGACCCGACTGGGCCGGCTGATGGTGGAGTTCCCCCTGTCCCCCGGCCTGACCTGCGCCCTGCTGAAGGCCGCCGCTCTTGGCTGCGAGAACCTGCTCCTCCCGGTGGCTGCCATGCTGTCGGTGGAAAACGTCTTCATTCGCCCAGGCCAGCCGGAGAAGCAGCAGGAGGCGGACGTGAAGCACAGGGAGCTGGCGGCGCAGGCAGGAGGGAGCAATGACTTCACCGTGCTGCTCTCCGTCTTCAGACAGTGCCGAGACAGCGAGTCCCCTGCCTCCTGGTGTCGAGACCACTGGGTCCACTGGAGAGCTGTGAAGTCCGCCCTCAGCGTGGAGACCCAGCTGCGAGAGACACTGCTGCGACTCAAGCAGCTCAAAGACTTCCCAGTCGAGACGTTTGACGGTCCCAAAAGTGAGCTGCTTCGCCGATGTCTCTGCTCCGGCTACTTCACCAATGTGGCCAGAAGGTCTGTAGGGAGGACGTTCTGCACAATGGATGGCCATGGATCGGTCGTTCACATTCACCCCTCATCCACACTGTTCGGACAGGAAGCCCAGTTGGACTGGATCATCTTCCACGACGTGCTGGTGACCTCCAGGGTGTACGTGCGGACGGTGTGCCCCATCCGCTATGAGTGGGTCAAGGAGCTGCTGCCCAGGCTGCACGAGGTGGACGTGTACCAGCTAAGCAGTGTGGCCAGGCAGGAGGTGACCGAGGAGGAGGCGGCTAAGTGGGAGAGAAAGGAAACGGACAAAAGACAGACAGAGGAGGGGGCGGAGGACGCCAGGAAGAAGTTGCAGAAGAGGAACGACGAGAGTTCGGTGTCAGAGGCTCGGGCGCGGTACCTGCAGCGCAAGCAGGAGAGGGCGCAGGAGCGGGGGAAGGAGCAGTGA

Function

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K18711 DHX40, DDX40; ATP-dependent RNA helicase DHX40

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005659 True 2350 mRNA 0.59 17 7281620 7292372

Neighbor

gene id symbol gene type direction distance location
AMCG00005688 cltc,cltcb,LOC108443353,LOC105907438 coding downstream 5140 7243950 ~ 7276480 (-)
AMCG00005687 NA coding downstream 48745 7229906 ~ 7232875 (-)
AMCG00005689 NA coding downstream 65977 7215353 ~ 7215643 (-)
AMCG00005683 rps6kb1b,LOC108443350,LOC107701421 coding downstream 112231 7157197 ~ 7169389 (-)
AMCG00005684 LOC107747042,LOC107744626,LOC107699258,LOC107693951,LOC103378375,LOC104941230,LOC107726096,LOC103364401 coding downstream 173846 7102290 ~ 7107774 (-)
AMCG00005698 NA coding upstream 175319 7467691 ~ 7468500 (-)
AMCG00005691 caln1,LOC107716051,LOC107659935,LOC107582596,LOC107672359,LOC107554278,LOC103034584 coding upstream 528822 7821194 ~ 7828552 (-)
AMCG00005692 caln1,LOC108277467,LOC107582596,LOC107554278,LOC107672359 coding upstream 560294 7852666 ~ 7869220 (-)
AMCG00005718 NA coding upstream 603974 7896346 ~ 7901372 (-)
AMCG00005715 LOC102799651,LOC107659914,LOC104957508 coding upstream 626307 7918679 ~ 7950134 (-)
G153681 NA non-coding downstream 2855 7278504 ~ 7278765 (-)
G153678 vmp1,LOC105021956,LOC107728773 non-coding downstream 79334 7179628 ~ 7202286 (-)
G153638 NA non-coding downstream 228061 7052805 ~ 7053559 (-)
G153586 NA non-coding downstream 345944 6935430 ~ 6935676 (-)
G153514 NA non-coding downstream 619124 6647316 ~ 6662496 (-)
G153742 NA non-coding upstream 582415 7874787 ~ 7875042 (-)
G153778 cct6a non-coding upstream 689658 7982030 ~ 7983931 (-)
G153779 NA non-coding upstream 691868 7984240 ~ 8021640 (-)
G153980 NA non-coding upstream 1281820 8574192 ~ 8588222 (-)
G154010 NA non-coding upstream 1437431 8729803 ~ 8730149 (-)
AMCG00005685 NA other downstream 135813 7109218 ~ 7145807 (-)
AMCG00005674 NA other downstream 785049 6490255 ~ 6496571 (-)
AMCG00005628 LOC107090330,LOC102220786 other downstream 1047592 6232159 ~ 6234028 (-)
G153342 NA other downstream 1198754 6081235 ~ 6082866 (-)
G153130 NA other downstream 1979422 5300769 ~ 5302198 (-)
G153733 auts2 other upstream 493182 7785554 ~ 7788321 (-)
AMCG00005704 NA other upstream 706964 7999336 ~ 8001405 (-)
G153806 NA other upstream 799376 8091748 ~ 8124685 (-)
G154142 NA other upstream 1798050 9090422 ~ 9092573 (-)
G154250 NA other upstream 2132918 9425290 ~ 9434940 (-)

Expression


Co-expression Network