AMCG00005671


Basic Information

Item Value
gene id AMCG00005671
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 6502453 ~ 6527620 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005671
CAGGCGCAGATCAGACAAGGGCAACCTGGAGAGACTGCGGTGCTGCTGTGCTTGCATGTGTGGACTCGTTTTAATACTAGTTTTGAACTGTGACGGAGCAGTGTCGGAACTCAATCAAAACATAGCGGATGGATATATAATGAGCTGGTATAACTCCCCGACCCGCCGCGGTTTCTGATGTCGTTGTGTCTTTAAGGCGACTGTGCGCCGGCGGTACCGGCCGGGACCTGCGGTCTGTCGGCGCAGGGTGGCTGGGCTGCGGCTCCGCGGACGGGATGGCCGAGGACGGCTGGAAGTCTGTGTTCTTCTCGGTTTTCGACTATAAAACGGAGAAGTATGTCATTGCCTCCAACAAACGAGTCGGGGTGTTATACAGAGTGATACAGCTGGCTGTGTTAGGGTACATTGTCGGCTCGGTGATCACGAAACTGAAAGGAGTGGTTCTCATTAACAGCTCGGAAACCGGGCCTCTCGTATGGGGGCCAGAGGATTACGTCATTCCCCCCCAGGGAGAAAGAGTCTTCTTTGTTGTAACGAACGTAATACAAACTCCAAATCAGAAGCTGACCTACTGTGCCGAGAGCTCGAAGGTCCTCGATGCTCATTGTCGACTAAATGAAGATTGTGTAGCTGGCGATGCAGTCATTGCTGGTAATGGAATAAAAACTGGCCGCTGTTTGAAAACCTCCAGAAACGCTACCGGCACCTGTGAGATATTTGGGTGGTGTCCCGTCGAGAGAAACATCAGACCTGAgaaGCCCTCGTTGGAGAAAGCTGAAAACTTCACAGTGTACATCAAGAATTTCATTAGGTTCCCCAAATTTGGATTTTCAAAGTCCAATGTCCTGGATACCACAGACAGTTCCTACTTAAAGAATTGTACATATCATGAAGTCCATCACCCCTACTGCCCCATCTTCCGTTTGGCAGAGCTGGCTCGCCAGGCAAAGCACGACTTTAAGGAAATGGCTGGAGGGTCCATAGGGGTCCTGATTGAGTGGAACTGTGATTTAGACAAGGATTACTCAAAGTGTAACCCCCGCTACACGTTCACTCGACTGGACGTGCACTCCAACAAATCCATCACCTCAGGATATAACTTCAGACATGTTCGgtattacaaaaacacagcCGGGGAAGACTGTCGGACGCTCTACAAAGTGTACGGGATCCGGTTCGACATCATGGTAACCGGACAGgcTGGAAAGTTTAACATAATCCCGACGATAATTAATATCGGCTCTGGGGTTGCATTAATGGGTGCTggGGCTTTCTTCTGtgacctggtgctgctgtaCATGATGAAAAAGAGCACCTTCTACAGAGAGCGGAAATTTGAGAGTGCCAAGAACTGCAAAAAAAATGGGGAAGGAATTACGCTGCCTGAGGCGAAAGCAGGCAAGAAAAACACGTGTGAACGAAGACAGCTGACAGACCTGTCGCCTGAGACCTAGCCAGCAGCGCACAAAGCGAGGGCGGTGCCATTTGTGTGGCGTCAACAAAGGGGACGGCAGATGTCCAGCCCTCCCTGGTCAACAAAGACGGCGTCTGTATTAAATAGCCTTTGTTCGCTTCAGTGTTTACGATGCTAAATGAACACCTGGGAGAGTTGAATACCATCGGCCTCCCCATCACCAAGCCTCACTTGCCAGTCCCGCTCCAAACTGACAACTACAGTGCGCTGGGAGGGACAAAACCAGACTGGGCTCGTACCATCTCGGAggtttttctgtgtgaatgtgatGGTTCTTTTAATACTGGAAACACTTCAGTCTGAGCAAGGTAACGCATGATCAACATTAACATGACCCTGAGGTGAAATCCTCTCACTCATGAAAGCAGGCCTTTGCAGCAAGACGAACAGAATGCACACACTGTATCGGCATGTCTTAGCAATGACCTTTGCTCTGAGCGAGCTTTTATCTATGAaatttgagattttgtattttagttctcaggatacagatttgttttcaacatCTATGAAGGCTGCACGTATGTTATGGACCATTCCTACATGAGCACACAGCCCATTAGGCATGGCATACACCAAAAAAGTGTGGCTTATGGGAAAGCAAGAGGCCAGCCATACATCTTCCTTACTCCTTTCACTCGACCACCACCACTCTCCTTAGCCACCTGGGAAGTATGTCTAAACTTAACTAAATTAACTGAAATTGAACAATTCAGCCCTGTCCTGGTCACACCCAgaacatttattcatattagACCATGGTAATCTATCTGAAAACAAGTGTAAATCCTTCTAAAAAGATAtgacaaacacattaattacagTGAATGGTGCTGAAGAGGTTCagaaactgaaatcaaaaacTTGACAACCTGTTAATTACGCAGGCGGTGGAATAATATTTTGCACATACGAATTAAGGTAAAGTGGGTTATGGAGTTTTTCCAGGACATTCCTCgatcacagcattttttttttttttaagcgtCACAATCAAAGTAACGACATGGATAGGATTGGCAATGTGTAACTTAATAAAGACTGCTGTAAGTACCTGTTGCTTTCAGATGTTACTGTGAagtttattgtatgtattttggttGCAGATCTTACtgtagacattgttaaaatgttaaatttatcTCAATGGATATCGATACTAACGGGGTTTGCATGGGGAGTTGCAGTACTTATGATCAGTACAAGTTGATGCTGGTTACAGGTGTAACACATACTTCGCTGTAGGTGTTTGTATGGCATCATTCCAGGGTGGCTGTGCAGGCTGCGGCCGTTCACCCAGATCATAATAGAGATCCTCAGGTGTGACCAGCAACATAGATTTAAGGTACAAAGAATCCGAACGTTTTCATGCAAGAGACTCCAGCACCACTAACTCTGAGGGGATTCACTTGTGGTCCGTCTATGAAACAGCTGGCCACATCTACAGTGTAGACTGCCATCATGACAACAAACACTACTCCACCACGTCGAATGTAGGGTTTGCGAACGTACGGCTTGCAGTTCAGTCTTGCAGAAGGATTAGGCTCAGGACACAACAGCACTGTGTAATGTAACCAAGATTATCTTACGCAGGAAACCATTCTATACAACGCAGTATTGTCATAGAAAAGGTACAAATGCACCGTGAAGCCATGTTGTGTTGTatgttgtggtttattttttaataaatgatgaTGCATTATACCCACCAGTTCATGTATATCAAACAACTGCATGGTTATACAGATGGACGTGTAGGAAAGCATATTCATACTAGGACTCAATTGCAGGTGTTTCCATATTGGAGAGATTGAAGTTGGAAGCTGCACATCTCCAACACTCCTTAGGCATGAACCCTCATATGCAAACGAAGGAAAAACACTcactacaaacaaaataaaaaggtttttcTAATGCCATCTGAAATTCTCACTACAGAGCATCTGTACATCCAGCCTTTCATCATACACGTTCAGAGAAGACAGAGGTAGTGGTTATTATTCAAAACTCcctacagaaaaacacacatttctcatGTGGGtgacaagttatttatttttttactaaagTCTTAATTATTCGTTTTAAACTTCTCAACATTCGACAATTGTACATACAGTAAAACTGATAAAGCAGTAATAAACTATATTAAACGGGTTGAATATCTCTTActgcatttcacatttaaatacagtacaggagggggacacaaataaacatttcaagttTGCTTTTGATTAGTGGGAGCCTACACGGAACACCTAACATAAATTAATCCTAATCTACGGCATATGTAGGGGCAGTAGAAAGTGATTCAAACTCCAACTTGAAGTGTCCAGGATTTCCGAGCAGAGCCTGTGGTGTGGTAGTGGTTCCCTCTTGTTTAGTACACATGCACCATGCCATAGAGGAAAGTCCAGAAGAGGACGTACGTGAAGAGGCCCCCCACCAGCCCCCCAGTGAAGAGCAATCGCCTGGACTTGAAATACTTGTTCCACCGCCGGCCAGCTTTCAGTATGAGCagcagggagaggaggaaggaggCCAGGAAGTAGAAGACGAAGCCGTACAGGCCCGTGAGCCCCAGGATGCCCGCCGTGGCCCCGGACAGAGCCGACACGGAGGTCCGGCAGTAGTCGAGCACCCCGTTGTTGCCCCGCACGGCCACCTCGCTGATGAACTGCGGGCCTTCCCGTTTCGCTGCCAGGGCGGCCATGCTACTGCGGCACGGAGCTGCTCCAACATACGGGCAAGAGAGGAGGGATATGACACAGGACACCATGGCATCGTCATCCATACCGTCCCAGTATGTCCTAGGAATGGACCTAGGAACCACTTCTATTAAGGTCGTCCTGCTGGAGACCCACTCAAGGACAGTGATGGACAGCTGCACCTTGCCCACACAGGCCCATATTCCCAGCGATATTGGGATGCACGCTAAGGAGCAAGATGCTGGCAGGATAGTAGACACTCTAAATGAGTGTATTGCTGCCTTACCCAGAGACCGGCTCCAAAAAGTCATCAAGATAGGTGTCTGTGGACAAATGCACGGAGTCGTATTTTGGAAAACGGGAACAGGCTGCAACTGGGTGAAAACCGGAAACGGCCAAAGATTCCGGCCAAAGGACACGAGTCCGCTGATCACATGGCAGGATGGGCGATGCTCTGGTGACTTCCTGTCCTCGCTGCCACAGCCCGACTCACACCTCAGCCTTGCCACTGGCTTCGGCTGCGCCACGATCTGCTGGTTCCACAGACACAGGCCTGACTTCCTGGCAGACTTCACCGCAGCTGGGACCATTCATGACTACGTGGTGGCCATGCTGTGTGGCTTGGAGAGACCGGTTATGTCAGCCCAAAACGCAGCCAGCTGGGGTTACTTCAACACGAACACCAACCAGTGGAATATGGAAATTCTGGGCTCCTTGGGCTTCCCTGTGCACCTGCTCCCTGAGACGATGGAGTCGGGCAGCAGCGCGGGAGTGACCTGCGTAGACTGGCACGGCATCCCTGCACACACACCCGTGGGCGCGGCACTGGGGGACTTCCAGTGCTCCGTGTACTCCTGCATGACTGACAGGACAGATGCAGTTCTGAATATCAGCACCTCTGCCCAGCTGACCTTTGCACTACCAGCGGACTTCCAGCCTCCCACGACCCCTGACCCCCAGTCCCCAATCTCCTATTTCCCCTATTTGGATGGCTCCTACCTGGCTGTGGCAGCCTCCCTCAATGGGGGCAGTGTGATGGCCGCCTTTGTCGCCATGCTGAAGGATTGGATGAGAGAATTAGGGATGGACCTTGATGATTCCAGCATCTATCCGCAGCTCATCAACGCTGCTCTGAATCAGAACAACACCGATCTGATGGTAAATCCAACGATTCTGGGCGAACGCCACAACACGAGCCACCTGGGTTTGGTGTCTAATATCTCTGGCTCCAACGTGTCGCTGGGTCACGTGACCAGGGCGGTGTGCCGAGGGATTGTCCACAACGTGTGCTCCATGCTGCCACCCGAGAGGCTGCTCGAGTCAGGTGTGAAGAGAATCCGCGGGAGTGGGAGTGCGCTCTCCAAAAACGAGGTTCTCCGGCAGGAAGTGGAGAGGGCATTTCCTTTTCCGGTGGTGTACGGCGAGGACGTGGATTCGGCCGTCGGTGTCGCTATGATACTGAATGACAGGATTTGATTAAAAATCACCATCTCATCCCTCCTGCAGAAGCACTGAGATGGCAGTGGTGAACTGTGTTCGGTAATTGGTGATAGAATTCAGATTCTATATATTAAAGCATAAAAGCACAGCCATCATGTTTAAATAGTTCTCTAACTCATCTTATTTATGATAAGTGAAATTAGAGACAAGATAACATGAGGCAGTTATATTGATATGAATCTCACTATGAACTGTGAAGCTGCACCGCTGAAAATATAGCTCACAAATTAAAAGATCGTTCATTAAGACAAATTAAGCATGCAAGACTATTCAGTATTACTGTAGTGGCATTTGTCAATCTACACGGCATGATTTGCAAAAGGGCTCAGCGATACCAGTCACTGTTCCTGGATACACACATCAGCAGAGTTGGCGTCCAATTTCCAATTCTACCTCAGTTCAGCCTAGTCAATTCTAATTCCTATTCTGTAACCATGACACATTCTAGATTCCAATTCCAGAATTGACCCCCAACTCTGATCAGCAGTCCGTGaattgtttggaaaaaaaaaaaacaatcgtTGTTAACATTCCTGGACCTCATTGTTTTGtaccattaatttatttataattttttaatgttatttaatttcaacacaattttgaaaataaaacattttgaaaaggg

Function

GO: NA

KEGG:

id description
K11214 SHPK; sedoheptulokinase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005671 True 6313 mRNA 0.47 19 6502453 6527620

Neighbor

gene id symbol gene type direction distance location
AMCG00005675 NA coding downstream 4792 6497360 ~ 6497661 (-)
AMCG00005673 NA coding downstream 16203 6481066 ~ 6486250 (-)
AMCG00005651 NA coding downstream 60087 6433714 ~ 6442366 (-)
AMCG00005652 NA coding downstream 70156 6425603 ~ 6432297 (-)
AMCG00005653 LOC107387056,LOC104963922,LOC107090352,LOC103133851,LOC106956654 coding downstream 103944 6390296 ~ 6398509 (-)
AMCG00005672 NA coding upstream 947 6528567 ~ 6545880 (-)
AMCG00005665 NA coding upstream 43437 6571057 ~ 6575631 (-)
AMCG00005664 NA coding upstream 55079 6582699 ~ 6594894 (-)
AMCG00005644 NA coding upstream 162831 6690451 ~ 6704360 (-)
AMCG00005646 NA coding upstream 179038 6706658 ~ 6711986 (-)
G153379 NA non-coding downstream 245281 6240402 ~ 6257172 (-)
G153375 NA non-coding downstream 267044 6235183 ~ 6235409 (-)
G153374 NA non-coding downstream 267595 6234548 ~ 6234858 (-)
G153373 NA non-coding downstream 268094 6234128 ~ 6234359 (-)
G153324 NA non-coding downstream 433439 6068787 ~ 6069014 (-)
G153487 NA non-coding upstream 33319 6560939 ~ 6563570 (-)
G153514 NA non-coding upstream 119696 6647316 ~ 6662496 (-)
G153586 NA non-coding upstream 407810 6935430 ~ 6935676 (-)
G153638 NA non-coding upstream 525185 7052805 ~ 7053559 (-)
G153678 vmp1,LOC105021956,LOC107728773 non-coding upstream 652008 7179628 ~ 7202286 (-)
AMCG00005674 NA other downstream 5882 6490255 ~ 6496571 (-)
AMCG00005628 LOC107090330,LOC102220786 other downstream 268425 6232159 ~ 6234028 (-)
G153342 NA other downstream 419587 6081235 ~ 6082866 (-)
G153130 NA other downstream 1200255 5300769 ~ 5302198 (-)
AMCG00005539 NA other downstream 2209582 4284717 ~ 4292871 (-)
AMCG00005685 NA other upstream 581598 7109218 ~ 7145807 (-)
G153733 auts2 other upstream 1257934 7785554 ~ 7788321 (-)
AMCG00005704 NA other upstream 1471716 7999336 ~ 8001405 (-)
G153806 NA other upstream 1564128 8091748 ~ 8124685 (-)
G154142 NA other upstream 2562802 9090422 ~ 9092573 (-)

Expression


Co-expression Network