AMCG00005673


Basic Information

Item Value
gene id AMCG00005673
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 6481066 ~ 6486250 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005673
ATGCTGCAGGTTGAGCCCCTGAACAGACTCCTGCAGGATAAGTGGGAGAGGTTTGCCAGCCGCATGTTCTTCATCAACTTCTTCTTCTACATCATGTACCTGGCGATCTTCACCACCGTGGCCTACAACAGGCTTGATGGAACGCCCCCTTTCCCAGTGCACCGGACCCCTCAGGGATGCCTGCGTCTCACTGGCCAGCTCATCTGCCTGCTGGGCGCCATTTACTTAATCTGCAAAGGGATTGTGGATTTCAGGAGGAAGCGTCCCACCCTGGAGACGTTGCTGGTGGATGGATTCTGTGAAATTCTATTTTTCTTGCAGGCCATCTTCTTCCTGATCTCCTCTGTGTTGTACACGAGTGGCAACGAGGAGTATGTGGCCTTATTGGTGCTGTCTCTTGCCCTCGCCTGGATCAACCTGCTGTATTACTCAAGGGGCTTCAAACTATTGGGCATCTACAGTGTCATGATACAGAAGATGATCCTAGGAGACATCCTACGCTTTCTGTTCGTCTACATGGTCTTCCTCTTCGGATTCTCCGCCGCCCTGGTGACGCTGATCGAGGATGTCCCAGCCGAGAGGAACGCCACCGAAGTCAACAGGACCCAAACGAACGCCCAACCCCCCCCGGAGGACTGTCAGAAACCCTCGTTCAACAACATCATCGACACCACCCAGGAGCTGTTCAAGTTCACCATCGGCATGGGAGACCTGGAGTTCACCGAGCAGTACGCGTTCAAGAAGGTCTTCTACTTCCTGCTCATCTCCTACATCGTGCTGACCTACATCCTGCTGTTCAACATGCTGATCGCGCTGATGGGGAAGACTGTGGATAAGATCTCCAACGAGAGCAAGTGTATCTGGAAGCTGCAGAGGGCGATCACAATTCTGGACCTGGAGAGGAATCTGCCCACCTGGCTGAAGTGTCGGCTGCGCTCGGGGGTGGTGAAGGAGCTGGGCCGCAGCCCGGGGGAGGACAGCCGCCGCTGCTTCAGAGTGGAGGAGGTCAACTGGTCCCGCTGGAACTCAAACCTGGGCATCATCAACGAGGACCCAGGGAACGAGGAGCTCCACAGACACGCCTCCCCCCAGGCCAGAGATCAAAGGTGGCACCGCAGCCTCGCCCTCATTAGAAACCTCAGTACCCGGAGAAACCCGCCCCCAGATGAGGAGGAGATGGCCACCCTGTCCTGAAGTCCCCGCTGAGAGCCAGCCACCCAGAGGCCACACCGTCACTGGTGCCCATCTCCCAGTCTTGGCTTCTTCCATCCATCTTCTCAATGTCTTCAGACACTGTTAAATCCATGTCCGTCGTCTGCCCTGATTTGACCACGTTTTGTTTTACCTACCTGTATGAAGGAAGCCACCAAAAGACTTCACCAGACTGCATCCTATAGTGTCCCACCTTCAAACtctccaaaaaaaaagtgtttttccgCAACTGTGTGGCAGGCATCTCCGAGCTCTGCAGCACAGAAGCCATCCGGTCTCTAATTAACCTATTCAATTGCAGTTTCAAACTTCCCTGCTGCGCACAGCCTGCACTACATATGTCATTCAGAGCAACACGTGTCCCAAAGGGTCTCCGTACATCTTCGATACTAActaacttgatttattttttttatacttgcACACAGAAGTAAACAAGACAAACCCACAGATCTGCTGTATCGCATTTTATCCCTGCTGAAATGAGCAACAAGAGCAgaattctgtctgtctgtatattaCACTGGGTTCAAATACTTTGCTGTGCACAGGCATCAATCTTTGTAAAACCTAATCGATCCGTCTtgatttttattctttacatgTTCTGAAGACTAGGCCTCTCATAGACTTTTACATTGCCGACACGGCTTTCAGTGTCTccacacatttatacaatagTTGCTTTACTTCCACATAAGAGCTCTTGCATATTGCCGATCACCATGCCTTACACTAACTATACCCAGGCAATCTCTGCCAAACCCCCTGGAGTGAATAATACATGTTTCCCCAGTTAATAGTAACCTGTGCCATCTCAGGCCTGAGTGAAAAGTCTTTAAACTGAGCTCATGTATTGCATTGTTCGTAAGTCTCTATGGTTCAATGTAATTTGCATGTAATCGTTTGCATAAAAGTGTTTCGGGAAAACAGAGTACGGACTTGGCTTAAGCCTTGAGTAAGCTGCTGTTATTACGTGCCTTATATAAAATGGAAAGTGATTTATAGTATGCAACATTCACCAAAATCCAAGCTGTCTCTCCATCTTCcttgtcattgtttttcaatatatattattattattattttttaatttcttggcagacacccttatccagggcaacttacaacataagtgtaaaacaaagtgcaaaaatacagttaattcAATTCTCATTATACTgctaatgtattctgtttttttttaaagcaaaaggGTGTATTTATTAGAAATGAAATATTATCTTGCTGGATTTCGTCATTATTCAGTTTGCAGAataagt

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0006811 ion transport biological_process
GO:0016020 membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005673 True 2495 mRNA 0.48 9 6481066 6486250

Neighbor

gene id symbol gene type direction distance location
AMCG00005651 NA coding downstream 38700 6433714 ~ 6442366 (-)
AMCG00005652 NA coding downstream 48769 6425603 ~ 6432297 (-)
AMCG00005653 LOC107387056,LOC104963922,LOC107090352,LOC103133851,LOC106956654 coding downstream 82557 6390296 ~ 6398509 (-)
AMCG00005641 myo19 coding downstream 141233 6334287 ~ 6339833 (-)
AMCG00005639 NA coding downstream 152071 6326196 ~ 6328995 (-)
AMCG00005675 NA coding upstream 11110 6497360 ~ 6497661 (-)
AMCG00005671 NA coding upstream 16203 6502453 ~ 6527620 (-)
AMCG00005672 NA coding upstream 42317 6528567 ~ 6545880 (-)
AMCG00005665 NA coding upstream 84807 6571057 ~ 6575631 (-)
AMCG00005664 NA coding upstream 96449 6582699 ~ 6594894 (-)
G153379 NA non-coding downstream 223894 6240402 ~ 6257172 (-)
G153375 NA non-coding downstream 245657 6235183 ~ 6235409 (-)
G153374 NA non-coding downstream 246208 6234548 ~ 6234858 (-)
G153373 NA non-coding downstream 246707 6234128 ~ 6234359 (-)
G153324 NA non-coding downstream 412052 6068787 ~ 6069014 (-)
G153487 NA non-coding upstream 74689 6560939 ~ 6563570 (-)
G153514 NA non-coding upstream 161066 6647316 ~ 6662496 (-)
G153586 NA non-coding upstream 449180 6935430 ~ 6935676 (-)
G153638 NA non-coding upstream 566555 7052805 ~ 7053559 (-)
G153678 vmp1,LOC105021956,LOC107728773 non-coding upstream 693378 7179628 ~ 7202286 (-)
AMCG00005628 LOC107090330,LOC102220786 other downstream 247038 6232159 ~ 6234028 (-)
G153342 NA other downstream 398200 6081235 ~ 6082866 (-)
G153130 NA other downstream 1178868 5300769 ~ 5302198 (-)
AMCG00005539 NA other downstream 2188195 4284717 ~ 4292871 (-)
AMCG00005560 LOC106568075,LOC104946632,LOC106603282 other downstream 2611857 3850136 ~ 3869209 (-)
AMCG00005674 NA other upstream 4005 6490255 ~ 6496571 (-)
AMCG00005685 NA other upstream 622968 7109218 ~ 7145807 (-)
G153733 auts2 other upstream 1299304 7785554 ~ 7788321 (-)
AMCG00005704 NA other upstream 1513086 7999336 ~ 8001405 (-)
G153806 NA other upstream 1605498 8091748 ~ 8124685 (-)

Expression


Co-expression Network