AMCG00005676


Basic Information

Item Value
gene id AMCG00005676
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 7017945 ~ 7022898 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005676
GCGGGGGCTCCCTCCTGTGTATTTCAGAGAAGGTGTGCGACACCAATGGAGATTTTGCAGATTGAATTTCTAATCCTAATCCTGTGCAGCCTGCGCGTCGGCCCCCTTCACGCCCAGCACAGGGGCCACACGTACCCGGAGATCCTGCGGGCGGCCGCCTACCGGGACCTGGGCGACCCGGTGCGCTGCAACCCGCACAACATGACGGTGACCATCTTCAAAGAGCAGTTCATCGACATGCCCTTCAGGCTGTTTGTCCTGGACAAAGACAACCGGAGCTACGACGCAGAGAAGATCGCCTCCTCCTGCAACTATGACCTCAAGCAAACCGCGCAGTTAATCCTGTTCACGACCCCCTACACCGGCTGCCATGTGCGCACACAGGGGGGTGTGGCGAGTCTGACGGTCATGGTCAGGGGGACGCTGGACGGGGGCCGCATTGACGTCACGGAGAGGGTCCCGCTGTCCTGCAGCGTCCAGCCCGTCCCAATACAGCCGCTTGTAAGCCCCGAGCAGTGCGGTAAGGACGGCGTCTTCACCATCGTGGTTTTCCGAAACGCCACCGTGCCGGGGCTCGTCCTGGAGTCGCTGCGGGTGTCCCGGGGGCAGGACCCGGCCTGCGCGCCCCTCCTGACGACCCCCGAGTCCGTGACCTTCAGGTTTCCCATGGTGGCCTGCGGCGCTCAGGCTCGGTTTATGGATGGGGCAGTGGTGTACTCTGTCAATATCGAGGCTGACAAGACTATCCTGAAAGGAAGAAAGGGTTCAATAACTCGAGACCGCACTTTCAAACTGACCGTGCAATGTAACTTTACATTAATGGGTTCAACCGAATTACACGTGAAGACCCAGAAGCAGCAGCCAGGAGAGCAAGCGGTATTGAAGGGAGAGGGGCCACTTCAGCTGGACCTGAGGTTGGCAAAAGACGCCGCCTACACCTCCTACTACGCCCCCCTGGATCACCCGGTGGTGCGTGTTCTGCAGCAGCCAGTGTTTGTGGAGGTCCGTGTTCTGAACCGGGAGGACCCAGACCTCGTGCTCCTGTTGGACAACTGCTGGGCGTCTACCAGTGACGACCCAGACGACGGCCTCCGCTGGGACCTCCTAGAGAAAGGgtgTCCCTTTTCTGGGGATGATTATCAGACCATACTCCAGGCTGTCTTGGCAGCTCCAGGAGTTTCCTTTCCCAACCACTACAAGAGGTTTCAAATCACAATGTTCACTTTTGTGGACTCCCCATCACCCCAGACCTTCCACGGCCTGGTCTACTTTCATTGTGATGTGGAAGTGTGTAAAGGGGTGAAGGAGTGCACGGTGTCCTGTGACAAAAGACAAAGGAGAAGTATCCTCCAAGATTGGACAATCCACTCTCTCCACACCTTTGTCTCCAAAGGTCCCTTCATGTTCTTCAAAGATTGAAACCTTGCTTTCTGAAACCCAACTCCGGATGAGAGCAGCGGTCTACATAGggcctgtgtttttgtttttgttttttaaatgtttgaagaGATTCTGTTTTAATGACCGTATGCAaagggtgtgtatgtgtaaagaAATTGTTGGGTTTCCAaatgaaatttatttttaaacttggtcttgtgtgtgtgtgtgtgtgactgagggAGGCAGTGATTTCAGACCTGCTTTCATATTTCGTTACCTGTGAAGACAGACCAAGAACTGCAGGACAATGCTTGTGTGCAGGAATTCAATGGATTGCTGTGTTCTGCTTGTGGCTGGATCTATTACAGACCACCGGGGGTCGCTGTGAGCTCAATGAACTGAGGAGATGAGCGTTCATGGATTCAACAGAGTGAGGGAATGGCTTTATATGAAGCATTAACATGCAATAGGAtgacagtgtatttacattaaGTATGCATGCTTATGCTTTGCATTGTTTATTCAAGCCTTTATGTATgaataatttgattttgttttctttaatacagAAAAGTTTGTGAAATTGGGTTCTTCTCACAGCTGGGATAACTTCCCCTGTTTCTAATGCCACCAGCGATTCCAGTTACCCTTACCATGTTGTAATTAAATCCCTCTATTCTAATTGAATGTCTGGGGCCTAAAAAACcctaaaatgaaatgaatgaaaaagccATGAATCCAAACAACATTAGAAATCTGTGGAGTCATCAgtgttcaaatataaatattctcAGTGTGGGCTGTTGTCATGGTATAATATATAGTTCAATACACCCAGAAGAATTTGTTGGGCTACAGAAAGGTCTACAGGTGGTTTTGAAGTTGGCAAAATCTGTGACTTTGCCAAAGGGATGTAGTGGGAATTATATGTGAGTATATCAACTTATTTAAATGCTCTTAGAGGGTGTACttgctttatataattatatatgtttgtataacCCCCTCATATTCTGAAATTGGACCTAACTAGAGAAGGAGCGTGTGGGATAAAAGTGCCGCCTTTTCTTTGGTCCAGATACCCAGTATAGGTGCTGGTTATTTTACACCCACTCCGCTGTGTCGGGACAATTAATGTGTTGTAGTGCGGTTCACTGTTCTGTGGCTGACCTTTAGGCTGTGCTTTACTGTTGCGCGGCTGGGTGTCAGCCATTTCATATCTGAATAAAGGGAGTTTGCGTCTTTTTGTGAAAGGTCATCCCTACACGAAGCCCAGATAACGAGCTGAACACAACAGGATCCTTACTTGTTCAGTACGAGTCTCATTCTTCCCTTCAGAAGTAAATAGTTTACCTCACCAAGCCACAGACATGGCTACGTGTCCGTACgctgcattttctttcatataAAATGGCGAAGGGAAGTTGCAGCTCAGCTGAATTTTTAGAAACATTACAGTAAACACACTAACAAGCCTTTCACCACAACCATTGAATAGAAACCTGTCCACCACTGCCTGCCTTCAACATGTGTGGGGTGGCCAAGACCGTGGCCTTGAATCCAGTGCTCTCTTTCAAGGTGGACACGTTAGGGGGTTGGACTTATACAAGAATATCAGGGCTGTGAGACGTCCACTATTTTATAATAAGCGAGATCATGTCAAAGTATAGGAGCCTGGCTACAGCCGTCAGTATTATAAAACCTCTATCGAGTCTAATTTTAACTCCAAAAGATCTAGATGCATAATAAGGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005676 True 3135 mRNA 0.48 11 7017945 7022898

Neighbor

gene id symbol gene type direction distance location
AMCG00005678 LOC106567973,LOC106603516,LOC107685783,LOC107712159,LOC107595527 coding downstream 1005 7016548 ~ 7016940 (-)
AMCG00005633 tmem211,LOC103045102,LOC108427286,LOC101167817,LOC106534416,LOC106603516 coding downstream 73593 6939812 ~ 6944352 (-)
AMCG00005631 NA coding downstream 86079 6924049 ~ 6931866 (-)
AMCG00005632 NA coding downstream 97084 6909318 ~ 6920861 (-)
AMCG00005655 abr,LOC107731041,LOC107688618,LOC107712163 coding downstream 145079 6825929 ~ 6872866 (-)
AMCG00005677 NA coding upstream 1287 7024185 ~ 7037056 (-)
AMCG00005680 ints2,LOC107744627 coding upstream 14785 7037683 ~ 7048482 (-)
AMCG00005679 med13a,LOC104957374 coding upstream 30812 7053710 ~ 7077304 (-)
AMCG00005684 LOC107747042,LOC107744626,LOC107699258,LOC107693951,LOC103378375,LOC104941230,LOC107726096,LOC103364401 coding upstream 79392 7102290 ~ 7107774 (-)
AMCG00005683 rps6kb1b,LOC108443350,LOC107701421 coding upstream 134299 7157197 ~ 7169389 (-)
G153586 NA non-coding downstream 82269 6935430 ~ 6935676 (-)
G153514 NA non-coding downstream 355449 6647316 ~ 6662496 (-)
G153487 NA non-coding downstream 454375 6560939 ~ 6563570 (-)
G153379 NA non-coding downstream 760773 6240402 ~ 6257172 (-)
G153375 NA non-coding downstream 782536 6235183 ~ 6235409 (-)
G153638 NA non-coding upstream 29907 7052805 ~ 7053559 (-)
G153678 vmp1,LOC105021956,LOC107728773 non-coding upstream 156730 7179628 ~ 7202286 (-)
G153681 NA non-coding upstream 255606 7278504 ~ 7278765 (-)
G153742 NA non-coding upstream 851889 7874787 ~ 7875042 (-)
G153778 cct6a non-coding upstream 959132 7982030 ~ 7983931 (-)
AMCG00005674 NA other downstream 521374 6490255 ~ 6496571 (-)
AMCG00005628 LOC107090330,LOC102220786 other downstream 783917 6232159 ~ 6234028 (-)
G153342 NA other downstream 935079 6081235 ~ 6082866 (-)
G153130 NA other downstream 1715747 5300769 ~ 5302198 (-)
AMCG00005539 NA other downstream 2725074 4284717 ~ 4292871 (-)
AMCG00005685 NA other upstream 86320 7109218 ~ 7145807 (-)
G153733 auts2 other upstream 762656 7785554 ~ 7788321 (-)
AMCG00005704 NA other upstream 976438 7999336 ~ 8001405 (-)
G153806 NA other upstream 1068850 8091748 ~ 8124685 (-)
G154142 NA other upstream 2067524 9090422 ~ 9092573 (-)

Expression


Co-expression Network