AMCG00005677


Basic Information

Item Value
gene id AMCG00005677
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 7024185 ~ 7037056 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005677
ATTGACAATATGGCTGCTGGCTCTGCAGAGGGGGGAAGGAGGAAGTCTTGGTTTTGACAGTCAGCCGCATCTCGAATAAGCCCCTCCAGACCGACCCGCAGCTCGATCTCCATGAATGAGGGGAGCCGGGCCGGCGCGGGATGCACTCTCTGAGCTGAGGCCACACTGCGCAAGCGAGAACCACCATGTCTTTTTTTAGGAGGAAAGCAAAAGGAAAGGAACCAGAGAAAGCCGCGGATGTTCGAGTCAGCAAAGCTCCGGTGCCAGTCCACTCCCCGTCTCTGGCCGCCCGCAACCATGCCCTCCTGGAAGCGGCGGGGCCCAGCCACATCGCCATCAACGCCATCTCCGCCAACATGGACTCCTTCGCCAGGGGCAGGACGGCCATCCTCAAGAAGCAGCTCAGCCACATGGAGGCAGCACACTTCGGTGACCTAGGGCGCTCTTGTGTGAACTACCAGGCCCAGGAGACCCGGTCCCAGCTCTCCAAGACGGTGGAGCAGATCCTGCGGGACAGCACTGCCATGCCCTACTTCATGCAGTTCATGGAGGTCCAAGGGGCCGAACACCTGGTCAAGTTCTGGCTGGAGGCCGAGAGCTTCCGCTCCACCAGCTGGTCGCGGATCCGAGCGCACAGCCTGAACTCCGTCAAGCACAGCTCCCTGGCCGAGCCCACCTCCCCGTCGACAGTCAAGAAACCCGATGGCACCGAGACCCTCCCCCTCGACGCGGAGGTGGGACGGCAGCCCCCACTGTCTTACGCCTCCAGCCCGGCCAAGGCCAACTCACACAGCCCCTCCAGGCCCCTGACCGGTAACCACTCCTGGCACTCAGACGACCGGGAGGCCCATGCACTCCGCAGGGGGCAGGGGGCGGAGACGCCCACAGGACAAGCTTCTTCCACGTcgtcttcttcctcctcctcctcctcctcttccaagACTGGGACCCCCTTTAAAACCCAATCCACCAATGCACTCAAGGACCTGTCGGACAAACTGATGAAAAGTATAGAGCGAGACGCAGTGAACCTCTTTACCAAATACATCTCTCCGGACGCGGCCCGGCCTGTCCCCATCACCGAATCCATGAGGAATGATATCGTGGCAAAGATCTGTGGCGAGGACGGGCAAGTGGACCCCAACTGCTTTGTCGTTGCACAGTCGGCTGTCTTTAACTATCTGGAGCAACAGCACTTTAGCGAATTCTTGCGGAGTCATCATTTCTGTAAGTACCAGATCGAAGTGTTGACCAGCGGCACCGTGTTCCTGGCTGACATCCTGTTCTGCGAGTCGGCACTCTTCTACTTCTCAGAGTATATGGAGAAGGAGGAGGCCGTGAACGTACTCCAGTTCTGGTTGGCCGCCGACAACTTCCAGGACCAGCTGGCTGCCAAGAGAGGCCAGTACTTCTCCCTCCAAGCCACCAACCCCCTGGGCTTCGACGACTCGGTGCGTTTAGAGATCGAGTCCAATATCTGCCGGGAGGGCGGGCCTCTGCCGGACTGTTTCACTACTCCCCTACGCCAGGCGTGGACCACCATGGAGACGGTGTTCATGCCGGGCTTCCTGTCCAGCAACCTTTACTACAAGTACCTGAATGACTTGATCAACTCTGTGCGGAGCGATGAGTTCCTCAGCAGGGCAGCCGGTGTGCCGGGACACAGCCCCCCACAGGACAGCGATAGTACCAAAAAAGCGGCGATTAAAATCCTAAAAAACTTCGACGAAGCAATAACTGTAGACATCGCCAGCTTGGACCCGGAGTCTCTGTATCAGCGTCCGTACGCTGGAAGAATGACATTCGGGAAAGTGAATGAACTCGGACAGTTCATCAGGGAGGCGGAGCCGGAGCCGGATGTGAAGAAATCAAAAGGCTCCATGTTCTCCCAGGCCATGAAGAAGTGGGTGCAGGGAAACACAGATGAGGCGCAGGAGGAGATGGCGTGGAAGATCGCGAAGATGATCGTGAACGATGTCATGCACCAAGCTCAGTACGACAAGGCCACTAAGCTATGACCCTCATGAAGACCCGGAAGCTACGTCTTTCCTCACGGCTACGGAGGGGCCCAGATTCCTGTGGGGGGAGCCAGCAACGACGACGACAACGACGAActgcatattgtatttatagGACGTTACTCCTTCATTTGTATGAAGACCGACAAGGCATTCCACGACCTCTGGCATCACGCTGTGTGTGAACTTTTAACTCTACTCCAGTCTAACACTATGAAGGCTTTTAATTGTGTGAAGAACAAGACCGAAACAAACCCAGCGAGACACAAAATAATGTTGCACAAAAGACGCACGCTggaatgaaatttaaaataagtaaaaagcCAATGACGCGACAAAGAGGCTGCTTAAGCAAGCGGGGAGGGATGGTGACATGAATGCCTCGCCCAGAAGGAGCGTAAAGCACTTGCCCCCTTGAACACGCGTGCCCACTGTGTCCATTGACCACGCGTGTCCACTGTGTCCTCTGTGTCCACTCAAATCAAAGGACTGGATGAAGTTAGCAAAGCGACAGAGGACCCAGTCGggggtttttttggtttttttttccttcttttttaatcaataaagtttattttaatgggaCCGGTGGACCTTAACCAGATTTCCAAGTTATGCCAGATTACGGTTTTATCGACAcatgcttttcttgtttttggtttgttttgtttcttttagtttcttgttattgtgttgtttttttcgtGTGAAGAACAGTCTTGAAAATGCAAGTTGAACTGCTCCTTTCCCCGTGTTCAGGAGAGACCGGAGGGGAATGTTACTGGACACGATGCCGTTGACTGCCtgtcaacccccccaccccgccatGTCATCATAGTGCACAATTGCAAGTTATTATACTTTGAAGAGTTGTAGAAACCTCCCTCTGACTCCAGCGCTGGAGGGGAAATGTACTCTCTGGCTTCCCTGTTACACAGCTGTAGTTTTATGGTTACCCTTGTGAGATTTCTACccatatataaatgtaagctCCTTTTTCTGGTGACCACAgtcctttaaagaaaaaagaaaacctttttgTATAATATGTTGCAAATAATCTCAATAATGACTGTTTCATGGGAAAGTGTACTCAGTGAATATCTTATTCTTTTGAGACGAATTGAGTTATTGTTAAgaataataagcagaaaaaaGACTGTGCATATGGTTTTTTGGTACTATGTACCATTACTATGTTTTCTGATGCCTAAGTATATGTGTACTTAatctataatatatttaaattgtgtttgatttcaaaatacatatattatt

Function

GO: NA

KEGG:

id description
K16526 AKAP10; A-kinase anchor protein 10

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005677 True 3296 mRNA 0.52 15 7024185 7037056

Neighbor

gene id symbol gene type direction distance location
AMCG00005676 NA coding downstream 1287 7017945 ~ 7022898 (-)
AMCG00005678 LOC106567973,LOC106603516,LOC107685783,LOC107712159,LOC107595527 coding downstream 7245 7016548 ~ 7016940 (-)
AMCG00005633 tmem211,LOC103045102,LOC108427286,LOC101167817,LOC106534416,LOC106603516 coding downstream 79833 6939812 ~ 6944352 (-)
AMCG00005631 NA coding downstream 92319 6924049 ~ 6931866 (-)
AMCG00005632 NA coding downstream 103324 6909318 ~ 6920861 (-)
AMCG00005680 ints2,LOC107744627 coding upstream 627 7037683 ~ 7048482 (-)
AMCG00005679 med13a,LOC104957374 coding upstream 16654 7053710 ~ 7077304 (-)
AMCG00005684 LOC107747042,LOC107744626,LOC107699258,LOC107693951,LOC103378375,LOC104941230,LOC107726096,LOC103364401 coding upstream 65234 7102290 ~ 7107774 (-)
AMCG00005683 rps6kb1b,LOC108443350,LOC107701421 coding upstream 120141 7157197 ~ 7169389 (-)
AMCG00005689 NA coding upstream 178297 7215353 ~ 7215643 (-)
G153586 NA non-coding downstream 88509 6935430 ~ 6935676 (-)
G153514 NA non-coding downstream 361689 6647316 ~ 6662496 (-)
G153487 NA non-coding downstream 460615 6560939 ~ 6563570 (-)
G153379 NA non-coding downstream 767013 6240402 ~ 6257172 (-)
G153375 NA non-coding downstream 788776 6235183 ~ 6235409 (-)
G153638 NA non-coding upstream 15749 7052805 ~ 7053559 (-)
G153678 vmp1,LOC105021956,LOC107728773 non-coding upstream 142572 7179628 ~ 7202286 (-)
G153681 NA non-coding upstream 241448 7278504 ~ 7278765 (-)
G153742 NA non-coding upstream 837731 7874787 ~ 7875042 (-)
G153778 cct6a non-coding upstream 944974 7982030 ~ 7983931 (-)
AMCG00005674 NA other downstream 527614 6490255 ~ 6496571 (-)
AMCG00005628 LOC107090330,LOC102220786 other downstream 790157 6232159 ~ 6234028 (-)
G153342 NA other downstream 941319 6081235 ~ 6082866 (-)
G153130 NA other downstream 1721987 5300769 ~ 5302198 (-)
AMCG00005539 NA other downstream 2731314 4284717 ~ 4292871 (-)
AMCG00005685 NA other upstream 72162 7109218 ~ 7145807 (-)
G153733 auts2 other upstream 748498 7785554 ~ 7788321 (-)
AMCG00005704 NA other upstream 962280 7999336 ~ 8001405 (-)
G153806 NA other upstream 1054692 8091748 ~ 8124685 (-)
G154142 NA other upstream 2053366 9090422 ~ 9092573 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_031559 NA non-coding NC_007116.7 CM002889.2 62044316 ~ 62045691 (-)