AMCG00005679 (med13a,LOC104957374)


Basic Information

Item Value
gene id AMCG00005679
gene name med13a,LOC104957374
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 7053710 ~ 7077304 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005679
CACAGCGAGCACTTGTCCTGCGCCTTCACCTTCTTCCTGCACGGTGACAGCAATGTGTGCACCAGTGTGGAGATCAACCAGCACCAGCCCATCTACCACCTGAGCGAGGGCCACCTCACCCTGGCACAGCAGTCCAACAGCCCCTTCCAAGTGATCCTGAGCCCGTTCGGGTTGAATGGGACCCTGACGGGCCAGTCGTTCAAGCTGTCCGACCCCCCCACGCAGAAGCTGATTGAGGAATGGAAGCAGTTCTACCCCATCAGCCCCAGCTCCAAGGAGAGCTCCGAGGACCGACCGGACGACATGGACTGGGAGGACGACTCCCTGGCCGCAGTGGAGGTCCTCGTTGCCGGAGTGCGAATGGTCTACCCTGCCTGCCTGGTGCTGGTTCCTCAGTCAGACATTCCTGCCCTGACCCCTGTGGGGTCCTCCCACTGCACAGCTGTTTATTCGGGTGGCCACCAAGTGCCTGCTTCCACACGAGACCCCGCGATCTCGTCTGTGACCCTCACTCCACCCACCTCACCCGAGGAAGCCCAGACAGTGGATTCTCAGTCTGCCCAGAAGTGGGTGAAGTTCTCCTCGGTATCAGACGGCTTCAGCGCGGACAGCACGAGTCACCACGGTGGCAAGGTCCCCCGCAAGTTGGCCAGCCAGGTGGTGGACCGCGTGTGGCAGGAGTGCAATATCAACCGTGCCCAGAACAAGCATAAAAACTTGAAGCAGAGAGCGGGCAGCACCCCAGGACAGCCCCAGGCCACCGGCCAGCCCCAGCAGCCGCCCCCCAAGCACAAGGCTGCGGAGAAGCCAGAGAAGGGGGAGAAGCAGCAGAAACGGCCCCTCACGCCCTTCCATCACCGCACTTCGGTCTGTGAGGACGTGGCCATGGAGCCCGATGGCGCCACCCAGCGCCTGGGCATCAGGGGGCAGGAGGGCACGGGCCGCTTCTCCAGCCTGCGCCCCTCGGACGTCTCTGTGGCCAAGACCCCCCAGCTCCACGGGCCCCCAGAGATGGCCGGTTCGCCCCCTCCCCCGCCGCTCAGCCCGCACCCCTGCGAACGGGGCGAAGAAGGAGCCGAGCCCATGAAgaacccctccaccccccacagCCAACACTTCTACCAGCCCGCCCCCGAGCCCTCCTGCCTGGTGCCTCAGAAAGCCGCCGAGGACCCCCGACTGGACCCCCTGGCCCAGCCCTTTCCCCCGGCCTACCCCGAGGCACTGGAGCCCACTGTGTACATGGGGGCCGCTGTCAGTCCTGACGACGACAGCGCCCACGCGCCCTGGAAGTTCTTTGTTCTTCCGCGGAGGAAAGACGCCAACTTCCCCACGCCCCAGCTGCCCGGAGACAAGCTGAGGGACGACCCCAGTGCAGCGGCCGGTCTGGACGGCATTGTATCGGTTACAGAGTTGATGGCCACCTCCAAGAAGCCCCTGAAAGTGTCTGAGGAGCGGGTGCACATGTACGTCCAGAGGAGAACCCAGTACCTGTCGGCAGCCTTTGGCGATGGCGACCACGAGCCCGACGACCCCTACGCCTTTGTGGACGGTGACGTGGAGTTCACCTTCCCGGACAAGAAGGACAAgcagggaggggagagggaggccgGCAAGAAACACAAGGGGGATGACGGCTCCAGTGGCGGCTCAGTGCCGGCAGATGGTGAGGACGCCATGTCGTTGTTCAGTCCCTCTTCCAAGAGTGACGCCCAGCGAGCGGCCGCCCACAACCGCACCGCCTCCACCAGCCTGATGCACGAGAACGACCTGGCCGTCTCCATCAACGACTTGGACAATCTCTTCAACTCCGACGAGGACGAGCTCACGCCCGGTGCCAGACGTGCCGTTAATGGGACAGACGATAAGTTTGGCAATAAGGAAGCCAAGCCGGCATCGCTTGACCATCTCTCCTGCATAAGTTCGGCTGATCTGCACCAGAtgttccccacccccccatcatTGGAGCAGCACATCATGGGCTACTCCCCGATGAACATGAACAGCAAGGAGTACTGCAGTCTGGACAATGCCTCGGGCATGACGGTGCTAGATGGCAACTCCACCCTGGGGGGCCAGTTCAGAATCGAGGTGGACGAGGGCTTCTGCAGTCCCAAGCCATCCGAGATCAAGGACTTCTCGTTCGTGTACAAGCCCGAGCCGTGCCAAGCGCTGGTGGGCTGCTCTATGTTCGCCCCGCTGAAGACCCTGCCCAGCCAGTGTATGCAGCCCATCAAGCTGCCCGAGGAGTGCCTGTACCGACCCAGCTGGAGCGTGGGCAAGCTGGAGCTGCTCAACCCTGTGCAGCCCATGACGTTCCTCAACAAGGACGGAAACATCCCCAGCGTGGGCAGTGCCATGGACCAGGACTACATCCAGACCTACACGCCGCAGACCCACACGCCCTTCATCTCCACCAGTGCTCCCCCCAGCAACGGCCCTGGCATTCTGCCCTCGCCCGCCACGCCCCGCTTCTCGGCCCCCACGCCCCGGACGCCGCGTACCCCCCGCACCCCCCGGGGCCCCTCCAGCGTCCAGGGCTCGCTGAAGTACGAGAACTCGGACCTGTACTCGCCCGCCTCCACGCCCTCCACCTGCCGGCCACTCAACTCGGTGGAGCCGGCCACTGTGCCCTCCATTCCCGAGGCCCACAGCCTCTACGTCAACCTCATCCTGTCAGAGTCAGTCATGAACCTGTTCAAGGACTGCAACTTCGACAGCTgctgcgtgtgcgtgtgcaacATGAACATCAAGGGCTCAGACGTGGGCGTGTACATCCCCGACCCCAACTGCGAGGTCCAGTACTCCTGCACCTGTGGCTTCAGCGCCGTCATGAACCGCAAGTACGGCAACGGCTCGGGCCTCTTCCTGGAGGACGAGCTGGACATCATCGGGCGTGGCTCGGATGTCAGCCGCGAGGTGGAGAAGCACTTCGAGGCCCTGCGCAGTGCCGTGCTGGAGCGGGGCGGCAGCCTGAGGGACCGCGTGCCCGACgagctggtgctgctgctgcaggaccAGTGCACCAACCCCTTCTCGCCGCTCACCACCCCCGAGAGCGACGGCCAGCCGCCCAAGGGCCTCAGCGCCCCTCCACCCTGCGTGCGCGTGGAGGAGCGGGACTGCCACAGCGACTGCTACCTGGCCCTCGAGCATGGCCGCCAGTTCATGGACAACATGTCCGGTGGCAAGGTAGATGAGACACTGGTCAAGAGCACCTGCCTGCATCACTGGGCCAAACGCAACGCTGTGGACGTCAGCATGCTGTGCTCCCAGGATGTGCTGCGGGTGCTACTGTCCCTCCAGCCTGTGCTGCAGGACGCCATCCAGAAGAAGAGGACGGTGCGCTCCTGGGGCGTGCAGGGCCCCCTCACCTGGCAGCAGTTCCACAAAATGGCGGGGCGGGGGTCTTACGgcACGGACGAGTCTCCCGAGCCCCTGCCCATCCCCACGTTCCTGGTGGGCTACGAGTACGACTTTGTGGTGCTGTCGCCCTTTGGCCTGCCCTACTGGGAGAAGCTCCTGTTGGACCCCTTCGGCTCCCAGCGGGATGTGGGCTACCTGGTGCTGTGTCCCGAGAACGAGGCGCTGCTCAACGGCGCCAAGGGCTTCTTCAGGGACTTGACGGCCGTGTACGAGTCCTGCCGGTTGGGTCAGCACCGGCCCATTTCCAAAGTGCATTCTGATGGCATTGTCCGGGTGGGTGGCACGGCTGCGAAGAAACTGGGGGACCAGCCGGTCAGCGAGTGGTTTGTGAAGGCGGCGAGCAGCAACAGCGACTCCTTTGCCAAACTCAAGCTGTACGCACAAGTGTGCCGGCACGACCTGGCTCCGTACCTCGCTACGCAGTCATTGGATAGCTCCCTGCTCACTCAGCCCAACCCCCCTCCGCCCTCCAGCCAATCGGCTTCCACGCAGGCACCCGCGTCCAACTCCACTGGCGCCCAGAGCACCCTGACCCCCAACAGCTCCACCCTCCCCAACAGCACTGCGGCCAGCGCCCCCGGCTCGACCGTCCCCCCCAACACCCCCTCCGCTGCTCTGCCCTCCTCGGGGCCAGCCGGCATGGCAAACAACATGCAGTCCGCCAAACCCGGTGCCTTCCCTCCATTTGGCAACATGACGTCGCAGGGCGGACAGCTAGGCCAGCAGCCAGGCATGCAAGGCGCAGGGGAGAGCGTGCCAGGCAACGCCCAGACCCAGGGCCCCGTCGAGCCCCCCGAGAGCACTATGGAGCGAGAGAAGGTGGGGGTGCCGACGGACGGCGATTCCCACGCGATCACCTACCCCCCGGCCATCGTGGTCTACATCGTCGACCCCTTCACCTACGAGGAATCGGAGGGGGGGGCGCACCCATCCAATGTGTGGACCCTGGGGCTGCTGCGCTGCTACTTGGAGATGCTGCAGTTCTTGCCGCCACATATCCGGAACGCCGTTTCTGTGCAGATCATTCCCTGCCAGTACCTGTTACAGCCAGTGAAGAACGAAGAGCGACACATCTACGCACAGCACCTGAAGTCCCTGGCCTTCTCAGTGTTCTCCCAGTGTCGGCGACCGCTGCCCTCCTCCACCAACGTCAAGACCCTGACCGGCTTCGGCCCAGGCCTGGCGCTGGACACGTCCCTCAAGAGTCCGGAGAGACCTGAGTGTTTGCGACTCTACACCCCGCCTTTCATCCTGGCGCCAGTGAAGGACAAGCAGACGGAGCTGGGCGAGACGTTTGGGGAGGCGTCCCAGAAATACAACGTGCTGTTCGTGGGCTACTGTCTGTCCCACGACCAGAGGTGGCTGCTGGCCACCTGCACCGACCTGTACGGGGAGCTGCTGGAGACATGCATCATCAACATCGACGTTCCCAACAGGGCTCGGAGGAAAAAGGGCTCGGCCCGACGCCTGGGCCTGCAGAAGCTGTGGGAGTGGTGTCTGGGGCTGGTGCAGATGACCTCGCTGCCCTGGAGGGTCGTCATCGGGCGGCTGGGCAGGATAGGACACGGGGAGCTGAGAGACTGGAGTATCCTCCTTAGTCGGCGCAATCTGCAGTCCCTCAGCAGGCGGCTGAAGGAAATGTGCCGGATGTGTGGCATCTCCGCCTCGGACACTCCCAGCATCCTCAGCGCTTGCCTGGTCGCCATGGAGCCCCAAGGCTCCTTCGTCATCATGCCAGACTCTGTGTCCACGGGCTCGGTGTTCGGCCGCAGCACGACTCTGAACATGCAGACGTCGCAGCTGAACACGCCGCAGGACACGTCCTGCACCCACATCCTGGTGTTCCCCACGTCGGCCTTCGTGCAGGTGGCGAGCTCCAACTACACTACTGAGAACATCGACATCGCCTTCAACCCCATCAACGATGGATCAGACGGAATGGGCATCTTTGATCTGCTGGACACAGGGGAGGACCTGGTGGACCCTGACATCATCAACATCTTACCAGCGTCCCCCACCACATCCCCTGTCCACTCGCCCGGCTCCCACTACCCCCATGGCGGCGACGGGAGCAAGGGACAGAGTACAGACCGGATGGAGTCTCATGATGAAGCTCCCAATATCCTCCAGCAGCCCTTGGCTCTCGGCTACTTCGTGTCGACAGCTAAGGCGGGCCCCCTGCCGGACTGGTTTTGGTCGGCCTGTCCGCAAGCGCAGAACCAGTGTCCCCTTTTCCTTAAGGCCTCTCTGCACCTCCACGTGTCTTCGGTGCAATCGGACGAGCTGCTGCACAGTAAACACTCCCACCCCCTCGACTCCAACCAGACCTCAGACGTGCTCAGaTTCGTGTTGGAACAGTACAACGCCCTGTCCTGGCTGACCTGCGACCCGGCGACCCAGGACCGGCGCTCCTGTCTCCCCATTCACTTCGTGGTTCTGAACCAGATGTACAACTTCATCATGAACATGCTATAATGGGCTGGGCGAGCGGGCCCTGCATGGGGAGGACCCGGCCGATGACTACAGTGCTGGACTTTATACGAGTTTGGAACGGTCTCCCGATGCAGGAGACCGCGGCGTGGGACGCTCCCCCAGGCAGCACCATCGCGGCTGCGCGGCCGGCTACCCTGTCATTGTTATATAACAGACTTAGAATATGGAAATaga

Function

symbol description
med13a Predicted to enable transcription coregulator activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be part of mediator complex. Human ortholog(s) of this gene implicated in autosomal dominant non-syndromic intellectual disability. Orthologous to human MED13 (mediator complex subunit 13).

NR:

description
PREDICTED: mediator of RNA polymerase II transcription subunit 13-like

GO: NA

KEGG:

id description
K15164 MED13; mediator of RNA polymerase II transcription subunit 13

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005679 True 6093 mRNA 0.63 26 7053710 7077304

Neighbor

gene id symbol gene type direction distance location
AMCG00005680 ints2,LOC107744627 coding downstream 5228 7037683 ~ 7048482 (-)
AMCG00005677 NA coding downstream 16654 7024185 ~ 7037056 (-)
AMCG00005676 NA coding downstream 30812 7017945 ~ 7022898 (-)
AMCG00005678 LOC106567973,LOC106603516,LOC107685783,LOC107712159,LOC107595527 coding downstream 36770 7016548 ~ 7016940 (-)
AMCG00005633 tmem211,LOC103045102,LOC108427286,LOC101167817,LOC106534416,LOC106603516 coding downstream 109358 6939812 ~ 6944352 (-)
AMCG00005684 LOC107747042,LOC107744626,LOC107699258,LOC107693951,LOC103378375,LOC104941230,LOC107726096,LOC103364401 coding upstream 24986 7102290 ~ 7107774 (-)
AMCG00005683 rps6kb1b,LOC108443350,LOC107701421 coding upstream 79893 7157197 ~ 7169389 (-)
AMCG00005689 NA coding upstream 138049 7215353 ~ 7215643 (-)
AMCG00005687 NA coding upstream 152602 7229906 ~ 7232875 (-)
AMCG00005688 cltc,cltcb,LOC108443353,LOC105907438 coding upstream 166646 7243950 ~ 7276480 (-)
G153638 NA non-coding downstream 151 7052805 ~ 7053559 (-)
G153586 NA non-coding downstream 118034 6935430 ~ 6935676 (-)
G153514 NA non-coding downstream 391214 6647316 ~ 6662496 (-)
G153487 NA non-coding downstream 490140 6560939 ~ 6563570 (-)
G153379 NA non-coding downstream 796538 6240402 ~ 6257172 (-)
G153678 vmp1,LOC105021956,LOC107728773 non-coding upstream 102324 7179628 ~ 7202286 (-)
G153681 NA non-coding upstream 201200 7278504 ~ 7278765 (-)
G153742 NA non-coding upstream 797483 7874787 ~ 7875042 (-)
G153778 cct6a non-coding upstream 904726 7982030 ~ 7983931 (-)
G153779 NA non-coding upstream 906936 7984240 ~ 8021640 (-)
AMCG00005674 NA other downstream 557139 6490255 ~ 6496571 (-)
AMCG00005628 LOC107090330,LOC102220786 other downstream 819682 6232159 ~ 6234028 (-)
G153342 NA other downstream 970844 6081235 ~ 6082866 (-)
G153130 NA other downstream 1751512 5300769 ~ 5302198 (-)
AMCG00005539 NA other downstream 2760839 4284717 ~ 4292871 (-)
AMCG00005685 NA other upstream 31914 7109218 ~ 7145807 (-)
G153733 auts2 other upstream 708250 7785554 ~ 7788321 (-)
AMCG00005704 NA other upstream 922032 7999336 ~ 8001405 (-)
G153806 NA other upstream 1014444 8091748 ~ 8124685 (-)
G154142 NA other upstream 2013118 9090422 ~ 9092573 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000304_13210441_13259571 MED13, MED13A coding CI01000304 null 13209728 ~ 13262698 (-)