AMCG00005680 (ints2,LOC107744627)


Basic Information

Item Value
gene id AMCG00005680
gene name ints2,LOC107744627
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 7037683 ~ 7048482 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005680
ATGGCTGTTTCTGTACCGTGTTTTCTGTTTCCTGTTGGCCAGACTGCCCCGTGCAGGATGTCGGAGTCCGCGGGCCTGCAGTTTGTGAGCCCCTACGCCTTCGAAGCCATGCAGAAGGTGGACGTGGTGCGGCTGGCGGCGCTGAGCGACCCGGAGCtgcggctgctgctgccctGCCTGGTCCGGATGGCGCTGTGCGCTCCCGCCGACCAGAGCCACACCTGGGCCCAGGACAAGAAACTCATCCTCCGCCTCCTCTCCGGCGTGGAGGCCGTCAACTCCATCGTGGCCCTCCTGTCCGTGGACTTCCACGCCCTGGAGCAGGACGCCAGGAAGGAGCAGCAGCTCAGACACAAGCCAGGCGGCTCCAATGGAGAGAGCATCTTGGTGTCCCAGCTCCAGCATGGCCTGACGCTGGAGTTTGAGCACAGCGATCCTCTCCGCAGACTGAGGCTGGCGCTCAGCGAACTGCTGGCCATCATGAATAAGgtctcGGACTCAAATGGAGAGTTTTTCTTAAAGTCTTCTGAGCTTTTCAAAAGCCCTGTGTATCTGGAGGAAGTGGCCGATGTTCTGTGCATCTTGCAAGCAGAACTGCCCTCGCTGTTGCCCATGATAGTGGTGGCGGAGGCGCTGCTGCACGTCCGCAATGGAGAGTGGTTCCTCTGTCTTCTGGTGGCCAACGTCCCGGACAGCTTTAATGAGGtgtgcagGGGGCTGATCAAGAATGGGGAGCGACAGGACGAGGAGAGTGTGGGGGGGCGGCGGCGGACAGAGGCCCTCAGACAGCTGTGCCAGATGAACCCCTCCCAGGCGCTCAATATCCGAGCCATGGTGGTGGAGGAGTGCCACCTGCCCGGGCTGGGCGTGGCACTGACCCTCGACCACACCAAGACGGACACCACGGACGACGCCGTCAGCCCCCTGGTGTCCTTCGTCAGTGGCCTGCTGCTGGGCACCAACGCCAAAGTGCGCACCTGGTTTGGCATGTTCATCCGCAATGGCCAACAGaggaagagagagagcagctcgGTCCTGTGGCAGATGAGGCggcagctgctgctggagctggtgGCCATCCTGCCGCGGTCGAGGAGCACCCACGTGCCCAACGACAGCGACGGCGACACCGAGCAGGCCATGTCCGGATACTCGGGCCTGCGGGAGGAGTACGTGGTGAAGGCCAGCGCCCTGCTGCGACTCTACTGCGCTCTGATGGGCATCGCCGGGCTAAGGCCCACAGACGAGGAGGCAGAGCAGCTCCTGCAGCTGATGACCAGCCGGCCGCCCGCCACCCCCGCCGGCGTGCGCTTCGTCTCGCTGTCCTTCTGCAAACTCCTGGCCTTCCCCACCCTCGTCAGCACCCCCGAGCAGGAGCAGCTGATGGTGATGTGGCTGAGCTGGATGATTAAAGAAGAGGAGTATTTTGAgagTGCCGCGGGGGTATCCGCCTCTTTCGGAGAGATGCTGTTATTGGTTGCCATGTACTTCCATAGCAACCAGCTGAGCGCCATTATCGAGTTGGTGTGCTCCACTCTAGGGATGAAGATTGCTATTAAACCGAGCTCCCTAAGTAAGATGAAGACTATTTTTACACAGGAGATTTTCACCGAACAGGTTGTCACGGCTCATGCGGTCAGAGTTCCTGTCACCAGCAACCTCAGTGCCAACATAACAGGTTTCCTGCCAATCCACTGCATTTATCAGTTGCTGAGAAGCCGAGCCTTCACAAAGTACAAAGTCTCTatcaagGACTGGATTTTCAAGCAGCTGTGCGAGACGTCCACCCCCCTCCACACGCAGCTGCTGCCCCTGATCGACGTCTACATCAACTCCCTGCTGGTGCTGTATTACATCCTGTCATACGAGGAAGCGCTTCTGGTCAACACGAAATCGCTGGCTCTCATGCAGAAGAAGCCCAAGTCATACTCGGCCGCCCTGATGGACCAAATCCCCATCAAGTACCTGATCCGCCAGGCGCAGGGGCTGCAGCAGGAACTGGGCGGGCTGCACTCGGCTCTCCTGCGCCTTCTGGCCACCAACTACCCCCACCTGTGCATGGTGGAGGACTGGATCTCATTCCAGATGGTCCCGTCCAGCAGCGCTCAGCTGATGCGGATCCTGGAGCACCTGACCCTGCTGTCGGCCAGCGACCTCATCCCCTACGCCGAGGTGCTGGTGTCCAACATTAGTCTGCTGCTCAACGAGGGCGTCTCCCGCAGAATCCTGCAGACCGTCAACAAGCTCTGGATGGTCCTCAACACAGTGATGCCCAGGAGGCTGTGGGTGATGACCGTGAACGCGCTGCAGCCCTCGGTGGAGTTGGTGCGGCAGCAGAAATACACCCAGAACGACCTGATGATCGACCCCCTGATTGTGCTGCGCTGCGATCAAAGGATATACAGATGCCCGCCCCTGATGGACATCACTCTGCACATGCTCAATGGCTATCTCCTGGCCTCCAAAGCCTACCTGAATTCCCACTTGAAGGAGACGTCGGACTTCGACCGGCAGACCCAGACCATCTCCAACCTGGGGCTTTCAGGGCAGCCCGACACCCCCGAGGTGACCCGAGAGGAGCTGAAGAACGCCCTGCTGGCGGCCCAGGACAGCGCCGCAGTACAGATCCTGCTGGAGATCTGCCTGCCCACCAGTGAGGAGAGGGGCCCGGCCAGCGGCGCGGGGGGCCTCCTGAAGAGCATCCAGCACCCGGCCGCAAAGCAGGAGGAGCCGGGCGGCGGCCTGCCAGAGGGGGGCTCGGCGGACAAGCAGGGAGGGCTGCTGAGCAACCTGCGTGAGGTGCAGTGCCTAATCTGCTGCCTGCTGCACCAGATGTTCATCGCCGACCCCAACATCGCCAAACTGGTGCACTTCCAGGGTTACCCACAAGACCTCCTTCCCCTGACCGTGGCTGGAATCCCCTCGATGCACATCTGTCTGGACTTCATCCCTGAACTCCTGGCACAGCCACAGCTGGAGAAACAGATATTCGCCATCCAGCTCCTGTCACACCTCTGCACTCAGTACGCGCTGCCCAAATCCCTGAGCGTGGCCCGGCTGGCCGTCAGTGTCATGGGCACCCTGCTCACAGTCCTGACACAGGCGAAGCGCTTCTCGTTCTTCATGCCCACGCTGGCCTGCCTGGTGTCGTTCTGCCAGGCCTTCCCCCCCCTCTACGATGACGTGGCTGCGCTGCTGGTCCAGGTGGGGCAGGTCTGTGCCTCCGACGTGGCCACCAAGGCCCGGGATATCGACCCCCTCATCGCCAGGCTGCAGCACTTGAAGCGGAAGCCGGAGGAAGTGGCGGGGATTTCGAAGGTCGCTCTCCATCAGAGGTTAGCCGGAGAGCTGGCATGCGCTGACCCCGACGTGCAGCTGTGTTACCGCATCGAAGCCACCTTCATGGACATCATTAACACCACGGTCCGGGCAGTGTGAGGGACGCAACTCGACTGGGACGGAGTGCTTTCACCTCGGGGGACGGGGAGGGCATCGCCCTGCAGGGTCCCCGTAATGAACCGCAAGATTTTGGTATGCGTGTCCGCGGGCTCGACAAAGCGGTGTCCTCCCGGGTGCCCCGGATTAGAGTGACTTTTAATACTGGCCCTGTTTTGAAGCATATTTTAACTAGCTACAAATAGCACAatcacaggttttattttttatttttgtttggtaagcgtgtgtatgtttgttgttgtgagAGAACATGGGCCGCTTGTCTCACTGAGGGAGGAATCCTTGTGATGTCAGACAAGAGCAAGTGATGTATCTGTTCTCACTCAAAAGTCGCTGTActtcagaaaacacaaactggTGCAGATTGTGTCGTTACCCCGACACACAAAGCCAAACCAGTTCCTACATGGACTGTTGCTATTTTCTTTCGGATGAAAACGTGTGGGTGAAATAGTACGGACTCGGTACTTCTATAAACCTGTTCAgtgtcacatttaaaatgtatatatttatgtctcTGCCATGTCTCAAAACGAGGTAACACATTTCAGGCACACTCTTTGAATGACGTTGTTTCTGGGGAAGCATAACACGTTTTGTATATATTCTAGAAATCTTAATTGGCTATTCAGGTTCTTTCAGACACCTACAGTACTCCTAGGTCATGGAAGCAGTTGTTACTATCGGTCTGTTTTCTAGACCACTTTACATACAAacttttaaagtgtaaaatCCAATCGGGAAAAGTCTTGTATTCGTTTTCAATGCAGGTGGTTTCAGATATCCAGGTGACTTGAAATTCTGCTGTTTTGAACGTTCTTGTATTTtgtagatttagttttttccaacGTTTGTAATAAAAGCTCTTACATCCTCTTC

Function

symbol description
ints2 Predicted to be involved in snRNA 3'-end processing. Predicted to act upstream of or within snRNA processing. Predicted to be located in nucleus. Predicted to be part of integrator complex. Orthologous to human INTS2 (integrator complex subunit 2).

NR:

description
PREDICTED: integrator complex subunit 2

GO: NA

KEGG:

id description
K13139 INTS2; integrator complex subunit 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005680 True 4338 mRNA 0.57 24 7037683 7048482

Neighbor

gene id symbol gene type direction distance location
AMCG00005677 NA coding downstream 627 7024185 ~ 7037056 (-)
AMCG00005676 NA coding downstream 14785 7017945 ~ 7022898 (-)
AMCG00005678 LOC106567973,LOC106603516,LOC107685783,LOC107712159,LOC107595527 coding downstream 20743 7016548 ~ 7016940 (-)
AMCG00005633 tmem211,LOC103045102,LOC108427286,LOC101167817,LOC106534416,LOC106603516 coding downstream 93331 6939812 ~ 6944352 (-)
AMCG00005631 NA coding downstream 105817 6924049 ~ 6931866 (-)
AMCG00005679 med13a,LOC104957374 coding upstream 5228 7053710 ~ 7077304 (-)
AMCG00005684 LOC107747042,LOC107744626,LOC107699258,LOC107693951,LOC103378375,LOC104941230,LOC107726096,LOC103364401 coding upstream 53808 7102290 ~ 7107774 (-)
AMCG00005683 rps6kb1b,LOC108443350,LOC107701421 coding upstream 108715 7157197 ~ 7169389 (-)
AMCG00005689 NA coding upstream 166871 7215353 ~ 7215643 (-)
AMCG00005687 NA coding upstream 181424 7229906 ~ 7232875 (-)
G153586 NA non-coding downstream 102007 6935430 ~ 6935676 (-)
G153514 NA non-coding downstream 375187 6647316 ~ 6662496 (-)
G153487 NA non-coding downstream 474113 6560939 ~ 6563570 (-)
G153379 NA non-coding downstream 780511 6240402 ~ 6257172 (-)
G153375 NA non-coding downstream 802274 6235183 ~ 6235409 (-)
G153638 NA non-coding upstream 4323 7052805 ~ 7053559 (-)
G153678 vmp1,LOC105021956,LOC107728773 non-coding upstream 131146 7179628 ~ 7202286 (-)
G153681 NA non-coding upstream 230022 7278504 ~ 7278765 (-)
G153742 NA non-coding upstream 826305 7874787 ~ 7875042 (-)
G153778 cct6a non-coding upstream 933548 7982030 ~ 7983931 (-)
AMCG00005674 NA other downstream 541112 6490255 ~ 6496571 (-)
AMCG00005628 LOC107090330,LOC102220786 other downstream 803655 6232159 ~ 6234028 (-)
G153342 NA other downstream 954817 6081235 ~ 6082866 (-)
G153130 NA other downstream 1735485 5300769 ~ 5302198 (-)
AMCG00005539 NA other downstream 2744812 4284717 ~ 4292871 (-)
AMCG00005685 NA other upstream 60736 7109218 ~ 7145807 (-)
G153733 auts2 other upstream 737072 7785554 ~ 7788321 (-)
AMCG00005704 NA other upstream 950854 7999336 ~ 8001405 (-)
G153806 NA other upstream 1043266 8091748 ~ 8124685 (-)
G154142 NA other upstream 2041940 9090422 ~ 9092573 (-)

Expression


Co-expression Network