AMCG00005681


Basic Information

Item Value
gene id AMCG00005681
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 7146999 ~ 7151960 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005681
GTGAAAGATGTCTGCGGAACTCTAGAGCCGAGGTTTAGCTAGTTTACTTTAGCtaggttgttttcttttcttttctctttctttttggtTTCCCCTCGATCGGTGCCGAGCCGATTATTAGGATGGTATTGGCTGTTTACGATGAAACTCCGGACTCAGTATGACAGTAGAGACCCCATCGAGTCCAGAAAATTGCCGAAACTAACCGAGCTGCCAACTGTAATGCAGACTAACTCCGTCAATCTCCACAAGCAGCCAGGCGATGTCTTATCCCTAACCCTCCAGCCGGAGCTGCTCACTCGGACCCCGGACGGTCCCTCCCGGCCCGGCGAGGTGCACGTCCCGATCCCCGTCCCCGCGGGAGAGCCCAGCGGCAGGCCGGCGTCGAGGAGACCCAGAGCCGGCTCCCACCCACACCCCAACGCTCACTCCCACTCCCACGGCCGCCCCCACGCTGCCCCCAACGAGCCGGAGCCCGAGCCGGGAGAGTCCGACTCCGAGCCCAGCAGCTCCCTGTCCGAGCTGCGTTACCTTTTCCGGTGGATTCAGAAAAGTCTTCCTTTTCTAGTGATCCTTTGTGCCAAACTAGTAATCCAGCACGCCCTGGGCATTGCTGTTGGTGTTGGGTTACTTACAACTTTCCTGTATGCAAATAAAACCATTCAGAACCAGGTTTTCCTACAGGAGCGCCGCTCAAAGCTGCAGTGTGCGTGGCTGCTGCTGTTCCTGCTGTCTTCCAGCCTGCTGTTGTATTACACTTTCCTGGCAGAGACCCTGTATTACTGTTTAATCTTTGTGAACCCTAGCATCGAGGCCCTGGGGTTCTGGGACGTATTATGGACAGTGGGAGTGACGAACTTCATATTGAAGTTTCTTTTCATGGGCCTGAAGTGCCTTATTCTGTTGACTCCTTCCACCCTCACGACTTGCAGATCACGGGGACGATGGTACATGTTGACAGAGGAAGCCGGCCAGGTGTACCAGACCTTGGTTCCTGTACCTGTGTGGTTCCGGTACCTGCTCACCTACCAGGAGATGGATGGCTCTCCAGGATTGACTCTGGGCATCCTGCTGGCTTTGGTCTACCTCATTCTGAAGCTCCTCGGGCTGTTCGGACAGTGGGGCTCGCTGCAGAAAACACTCCGGATACTTTTCAATGAAGAGAATAACGGAGTGGCCGCCACGAAGACTCAGTGCAGCGAGATGGGAGACTTCTGCCCGATCTGCCAGGCTGAATTCAGACAGCCCCGAGTCCTCCTGTGTCAGCACATCTTCTGTGACGAGTGCATCTCCCTGTGGTTCAACCGTGAGAAGACGTGTCCTCTCTGCCGGACGGTGATCACCGACAAGGTCCACAAGTGGAAGGATGGTGCAACTTCTCCTTATTTACAGATCTACTGAGGGCAGCggagtgatttttaaaaatataattccatGTAACAATGTAGGTGGTAGCACAATAAATCTGTAAGGTGAAGGTCATGTACTTTTCAGCAGCTAGTGAGAGATTATAGTTGTGACTTTCACGGCACGTCATTTCAACCACAGGGGGGATATGACCATTATGATTACCGACTGCCGGCCGCAGAAACTTTTTTCTTCCCGCCTGCCAGTTTGTACCAAGGGCTTCGGTGATTGCTCTACTTTTGTAGGAAATAAAGGGCTACTCCTGATGGAACTCACCACATGACTTTACCCCCACCCCGAGCCAAGCGTTAGAAAGGTTACCCAGAAACACTTGCGAAGGGTGGCATCTCTCTCGGTCTCTTTGCATGTCCCTGGTTTTTATATTGTTCTGAATTCCTTAAGGatggaaatgttatttaattcatgttttttgcaCTTCCTATATAGAATAACTGGTGAAAGTATTTTTTGCACTTGTACAAAAAGTTATAGtattttttacaaacaaattGTAAATACTTTAAGCAtacagaatacatattttaagtacAGGTTTGATAGCAGACGCTGATATGAGTTGCATTCAAACCAAGTGCAAAATTCTGGCACTAGTTGttagtttaagaaaaaaaaaaatagaaaaaacaatccCGTCACAACTTTATGAATGAGTGACGCTCAGAGCATTTCATTTGTAGTAACTGATAGAGTAACTGACTGATgcacaaccccctccccccacaccaCCTTCTGACTAGCAAAAGGCTGCTGTGGTAAATCTCTTCCTCTTCTGGAATTGCCACTCTCTCATTCCCATTTAACAGAGAACTTGGGCTTTAAGAGAGTTGCGAAGGTCTTCAAGCATTGATGGTGCTCTTGGAAAGCTTATTGAACAGaagttacacaaacaaacatgaacacCTCGGCCCAATCCCTGAATAGGAACAGAAGTGGTTCAGGTTTGTGGTTCAACTTCTGGGTTAAACTGAACTCGGGTGCTGCACATCTGGGGTCACGTTTCTTTGTGTTCTTCCAATGAACTTTCCTtttatctgtgatttttctaaGCTTTACACACCTACTGAAAAGACTGCTAAACAAGATTTCAGGGTTTATGTTACTCCATTTAAAGAATATGGAGATTTATCCTAACAAGCTGTGTGCAGGATTTCATTTGaagcatttgtaattcagtttttcaaaagACCAAAGATTGGaatttacacttattttattaccatGTTTATCATAGTTACTATAAAAAGTTTTTGAAAGATTGATTTTAAGATTGGATTTTCCCATCTAATTTTGTGTTTGCTCAGttatttctccattaaaaaTGTCCAACAAAA

Function

GO: NA

KEGG:

id description
K22379 RNFT1; E3 ubiquitin-protein ligase RNFT1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005681 True 2759 mRNA 0.47 9 7146999 7151960

Neighbor

gene id symbol gene type direction distance location
AMCG00005630 NA coding upstream 210165 6933254 ~ 6936834 (+)
AMCG00005643 timm22,LOC107595490,LOC107688620,LOC107731058,LOC107740820,LOC107665041,LOC102778162 coding upstream 361140 6784162 ~ 6785859 (+)
AMCG00005662 NA coding upstream 477609 6664179 ~ 6669390 (+)
AMCG00005661 ncor1 coding upstream 528413 6602985 ~ 6618586 (+)
AMCG00005669 LOC107676655,LOC107718355,LOC107680877,LOC107553589 coding upstream 576900 6568087 ~ 6570099 (+)
AMCG00005682 NA coding downstream 18565 7170525 ~ 7174305 (+)
AMCG00005686 ptrh2,LOC107744620,LOC107576753,LOC107699263,LOC107548881 coding downstream 89320 7241280 ~ 7241786 (+)
AMCG00005693 NA coding downstream 147715 7299675 ~ 7304137 (+)
AMCG00005696 NA coding downstream 191048 7343008 ~ 7343639 (+)
AMCG00005697 NA coding downstream 192028 7343988 ~ 7346979 (+)
G153485 NA non-coding upstream 583521 6560899 ~ 6563478 (+)
G153390 NA non-coding upstream 753271 6333252 ~ 6393728 (+)
G153381 NA non-coding upstream 815628 6282988 ~ 6331371 (+)
G153348 LOC107090330,LOC102220786 non-coding upstream 912952 6232159 ~ 6234047 (+)
G153312 NA non-coding upstream 1098561 6048130 ~ 6048438 (+)
G153687 NA non-coding downstream 145174 7297134 ~ 7297381 (+)
G153689 NA non-coding downstream 146194 7298154 ~ 7298512 (+)
G153702 NA non-coding downstream 208424 7360384 ~ 7361317 (+)
G153747 NA non-coding downstream 735606 7887566 ~ 7887780 (+)
G153816 NA non-coding downstream 1099341 8251301 ~ 8278074 (+)
AMCG00005663 NA other upstream 484519 6608643 ~ 6662480 (+)
AMCG00005667 NA other upstream 658217 6487718 ~ 6488782 (+)
AMCG00005647 NA other upstream 709921 6434521 ~ 6437078 (+)
AMCG00005583 LOC106603777,LOC105895333,LOC108428505 other upstream 1905223 5214813 ~ 5241776 (+)
AMCG00005546 acaca,LOC107691719 other upstream 2583979 4560213 ~ 4563020 (+)
G153675 NA other downstream 108717 7260677 ~ 7265971 (+)
AMCG00005694 NA other downstream 155098 7307058 ~ 7334571 (+)
AMCG00005660 LOC106603524 other downstream 597223 7749183 ~ 7787871 (+)
G153815 NA other downstream 1061944 8213904 ~ 8230590 (+)
AMCG00005720 NA other downstream 1346542 8498502 ~ 8507097 (+)

Expression


Co-expression Network