AMCG00005683 (rps6kb1b,LOC108443350,LOC107701421)


Basic Information

Item Value
gene id AMCG00005683
gene name rps6kb1b,LOC108443350,LOC107701421
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 7157197 ~ 7169389 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005683
TAGGAATTCTTTGGGCAGTGCGCATGCTCGGTCCAGTAAGTCGTCTTTTGAGgcctcttgtgttttttttgtttttttccggTGGAATTGTGTGTGGTTGGTGGCACTGTGCGCATGCCCCGTACTGGAGCCGGTTATGGcggcggtgtgtgtgtgtccatgagGCGGGCAGAAAGCGCCATTCTTACGGACTGAGACGGCAAAGAGAGACCGAGGCCATGGCTGGCGTCTTCGACATTGACTTGGACCAGCCGGAGGACAATGTCTCCGACGAGGAACTTGAAGACGGGGCTCAGATCAGCGAATACATGGAACAATGCAGCGGCTTTGAAGTCTTTAACATAGAGAACTGTGAGAAGTTTGAAATCTCAGAGGACAGTGTCAACAAGGGAACCGAGAAGATTCGTCCCGAGTGCTTTGAGCTGCTGCGAGTCTTGGGAAAGGGTGGCTATGGGAAGGTTTTCCAAGTGCGGAAGGTAACGGGGGCCAACTCGGGAAAGATATTCGCCATGAAGGTCCTGAAAAAGGCGATGATTGTGCGCAATGCGAAGGACACCGCTCACACGAAAGCAGAGCGCAACATCCTGGAAGAAGTCAAGCACCCCTTCATCGTGGACCTCATATATGCTTTTCAGACCGGTGGCAAACTTTACCTCATCCTGGAGTACTTAAGTGGTGGAGAGCTGTTTATGCAATTGGAGAGAGAAGGAATATTCATGGAAGACACGGCCTGCTTCTATTTAGCAGAAATCTCCATGGCCCTGGGGCACTTGCATCAGAAAGGGATCATTTACAGGGACCTAAAACCAGAAAATATCATGCTTAACAACCAAGGTCACGTGAAACTGACGGACTTTGGGCTCTGCAAGGAGTCGATACACGACGGCACCGTCACCCACACATTCTGTGGGACGATAGAGTATATGGCCCCCGAGATCCTCATGCGCAGTGGACACAACCGGGCAGTGGACTGGTGGAGTCTTGGGGCCTTAATGTACGACATGCTGACAGGAGCGCCACCGTTCACTGGAGAAAACCGGAAGAAAACCATCGACAAAATTTTGAAGTGTAAACTGAACCTCCCGCCCTACCTCACACAAGAAGCCAGGGATCTGCTAAAGAAGCTGCTGAAGAGAAACGCCTCATTACGGCTGGGAGCCGGAGCCGGAGATGCCACGGAAGTGCAGACTCATGGCTTTTTCAGACACATTAACTGGGATGAACTCCTCGCTCGCAAAGTGGAGCCTCCTTTCAAACCTATACTACAATCTGCAGACGATGTGAGCCAATTCGATTCAAAGTTTACGAGCCAGACCCCTGTGGACAGTCCCGACGATTCCACGCTCAGTGAGAGTGCCAATCAAGTCTTCCTGGGGTTTACCTACGTAGCTCCGTCAGTGCTGGAAAATGTAAAAGAGAAGTTTTCATTTGAGCCAAAAATCAGATCACCTCGTCGATTTCTGGGAAGCCCACGGACGCCAGTCAGTCCGGTGAAGTTCTCCTCGGGGGACTGCTGGCCCAGAGGTCCGCCGGGGCCCGGAGCCCCAGCCGTACAGTCGCCCACGGAGTTCCCCATGGAGGTGTCAGAACAAATGGACGTGACCTCGAGCGGCGAAGCCTCGGCGCCGCTGCCCATCAGACAGCCCGGAGGCACGAGCAACGCACCCTTCAAAAAGCAGGCCTATCCCATGATCTCCAAGCGGCCAGAGCATCTACGTATGAATCTATGACCTTCAGCTGACTCTAGAattttttcttggttttgttttgttttttaaagaacactAGAAAATGATGAAACGGTGACCCCCAACCGCCCCCCCACGGCCCGTTTCCTCGCCCCTCAGACAAGCATGTGCGCAGATGAGCCGGAGTGAGAGAGACTGGCAGCGACGATTCATTTTGGTTTTCCATTCTTCCACAAGCTCAGGCCGTCAGGAGCGCCAGATGTGTTCGAGGCCTGAGTCCGGATTTCCTTTAACACAGCTGTAGCACATATGTcagataattataattataatgacatCTTTCATCCGAATTCACCCCACATCTACAGACTGGCTGAGTGAGATGTGCCGCCCTGTGTCGGTAGATTTAACGCTGTCAGAGAATCACTTCCACTGaatgcttgatttttttttatttttttatttttttttacattttctct

Function

symbol description
rps6kb1b Predicted to enable ribosomal protein S6 kinase activity. Predicted to be involved in TOR signaling and peptidyl-serine phosphorylation. Predicted to act upstream of or within protein phosphorylation and signal transduction. Predicted to be located in ribosome. Predicted to be active in cytoplasm and nucleus. Orthologous to human RPS6KB1 (ribosomal protein S6 kinase B1).

NR:

description
PREDICTED: ribosomal protein S6 kinase beta-1-like

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0007165 signal transduction biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K04688 RPS6KB; ribosomal protein S6 kinase beta

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005683 True 2170 mRNA 0.51 15 7157197 7169389

Neighbor

gene id symbol gene type direction distance location
AMCG00005684 LOC107747042,LOC107744626,LOC107699258,LOC107693951,LOC103378375,LOC104941230,LOC107726096,LOC103364401 coding downstream 49423 7102290 ~ 7107774 (-)
AMCG00005679 med13a,LOC104957374 coding downstream 79893 7053710 ~ 7077304 (-)
AMCG00005680 ints2,LOC107744627 coding downstream 108715 7037683 ~ 7048482 (-)
AMCG00005677 NA coding downstream 120141 7024185 ~ 7037056 (-)
AMCG00005676 NA coding downstream 134299 7017945 ~ 7022898 (-)
AMCG00005689 NA coding upstream 45964 7215353 ~ 7215643 (-)
AMCG00005687 NA coding upstream 60517 7229906 ~ 7232875 (-)
AMCG00005688 cltc,cltcb,LOC108443353,LOC105907438 coding upstream 74561 7243950 ~ 7276480 (-)
AMCG00005659 NA coding upstream 112231 7281620 ~ 7292372 (-)
AMCG00005698 NA coding upstream 298302 7467691 ~ 7468500 (-)
G153638 NA non-coding downstream 103638 7052805 ~ 7053559 (-)
G153586 NA non-coding downstream 221521 6935430 ~ 6935676 (-)
G153514 NA non-coding downstream 494701 6647316 ~ 6662496 (-)
G153487 NA non-coding downstream 593627 6560939 ~ 6563570 (-)
G153379 NA non-coding downstream 900025 6240402 ~ 6257172 (-)
G153678 vmp1,LOC105021956,LOC107728773 non-coding upstream 10239 7179628 ~ 7202286 (-)
G153681 NA non-coding upstream 109115 7278504 ~ 7278765 (-)
G153742 NA non-coding upstream 705398 7874787 ~ 7875042 (-)
G153778 cct6a non-coding upstream 812641 7982030 ~ 7983931 (-)
G153779 NA non-coding upstream 814851 7984240 ~ 8021640 (-)
AMCG00005685 NA other downstream 11390 7109218 ~ 7145807 (-)
AMCG00005674 NA other downstream 660626 6490255 ~ 6496571 (-)
AMCG00005628 LOC107090330,LOC102220786 other downstream 923169 6232159 ~ 6234028 (-)
G153342 NA other downstream 1074331 6081235 ~ 6082866 (-)
G153130 NA other downstream 1854999 5300769 ~ 5302198 (-)
G153733 auts2 other upstream 616165 7785554 ~ 7788321 (-)
AMCG00005704 NA other upstream 829947 7999336 ~ 8001405 (-)
G153806 NA other upstream 922359 8091748 ~ 8124685 (-)
G154142 NA other upstream 1921033 9090422 ~ 9092573 (-)
G154250 NA other upstream 2255901 9425290 ~ 9434940 (-)

Expression


Co-expression Network