AMCG00005685


Basic Information

Item Value
gene id AMCG00005685
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 7109218 ~ 7145807 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005685
ATGGCCTGGTTGGACTCCTGCCTTGAGGAGACCCTGCTACCTGGGAGGCCGTGGCACAAGGTCTATGAAAAGCTGAGCACAGCATTGGCCAAGGAGGTTGAAGCCCAGCTGAAGAGCAGTCCTCAGGGCCAGCTCTGTCTGGATCACCTTGGGGGACACTTTGTGGAGAACTACTTGAGCAGTTTGTCCGACCAGACTAGCTTCCCGTGTCCTCCGACACGGAGCAAGAGTGAGAAAGCCTCTTTGGAGAGAGAGGTGCTCAGTCAGCTGGACACCATGTGtgagagagcagcagagagCAGCCTTTGCCAACGGAGACCTGATGGTGACTATGCCGGTGTGTGCCAGGAGATGAGGGATTTTATCGATGATACCTATAACATTGTGCAAAAGGAGATGGAGCAAATGTTGTCTGTTGAGGAGCGAAAAGAAAagGAAAGGTTGGAGTTTGACCCGGTCCACATGGACTCTGCTTGGGCCTTAACGGCACGGAGACGCCCGCAGTCTGTAGAGAGCAAAGACCTGCACCTGACCACCCGCCGAGCGCCCGCCTTCCAGCTCAAACCTCACGAAGTCGGTGTCCTGTGTCTGAAGCTGCAGCCTCCTCCCCTGCACAGCGCTCAGAGCGAGGCGGTGGGGCACGTGAAATATGAAAGGACTCCCTGTATGCAGGTGTTTGCTACCGATGAGCAGATGATCAGTGAGTCCAGCAAGGCCCTGAACATCCTCTATGTTCACAGCGGGATCTATGAACCTTACCTGATCCACTGGCTCTTCCCGTTGCAAATTGCATTCCCACGGGCTGCGGCCAAAGgGGAACACTGTTACGAGTTGTCGATGTTTCTTCACCTCCTCATCCAGAGGTTTCCTGGCTGGCCGGAGATCTTCGCTTCGGCTGAGAATGTTCTGAGGTGTGTGGAGGAGCAGGACCCAGATCTGTTTGCTCATCTGCAGCTCTGTTCGTCTCAGAATGTCGTTTTGGACTCTAAGGATTTTCTGGTGGAGCTCATCACTCAGGAACGCGACGAGGCCCGGAAGCTCCTGGACGTCCCGGGCAGGTCCGACGGGCCACAGGCGGTCACCAGACAGCTGCTGGCCGACCCCGTCATCTTCCTGCGAAAGTGGATGGGAGAGGGATTCCTGAGTGTCCTCGACCTGCCCGCCGTTCTGCTCATCTGGGACCAGCTGTTCCTGCAGGACTGGAGCAGGACAGTGATGGAAGACTTCTCCCTGGCGGTCCTGATGTTGCTCAAGGACCCCCTGCTGGCGGCGGATGACTTTCACAGCATGAGAGCGGTGATGCTGGACCACGCAGGCCATCTGTTCACCACCGACATCCGCCAGGCGTGGATACACCTGCAGCAGGGAGGCCTGGCGGCTGACATCCCAGGGTTTAACAGATTAAATACGAGTGATATCCTACCAACCGGGCTGAAGGATGTATCTGTCAGCTTGATTCTGCGGCCGCCGACAACGACTACCGCACATCACTCTTGGCTGAAGGATTTCGATCCCCTGGCAGTCCGGCTCACCGCTTCGGTGTTTTATGGTGACGTGAAGCTCCGTTCCAAATCCAGTCTCAAAAAGCCATCTGTTGAGAAAAGGGTgccagaaaagaaaatggcGGCCGAATACAAACTGCACTTCAATGACGTCTTTCTCTTTGACTCCCTGGACCCATCAGAGTTCAGAGAAATAGATCCGTTGAGGGACAAACCTGCTGTGGTCATTAAGGTTGTCTACAGTCCCAATGTAAATGGCTTCTCTCCAGTGACGCTGGGTTGGGTCAGAGCCGACCTGTTGCGTGAAGAGAAGGCGGGCCTTCGCACACTGTGGGCTCCCGGCGAGTTCACGGCACACCTCCCCCTGCGCGCCGGGCCGGTCCCCGAGCCTCTGTCGGACCAGGGCTCAGCAAACAATTTAATAGAGCCCTTACAGAGGGGATCAGATATCCAGGTGACTGTTTACGATCCCTTCAAAGACGGTCGAAGGCAGGTAGCCAGCCCGGCCTGGGTCCAGAGCTCTCTTCCTGAGGAACCCTCTGAGCAGAATGCTCCCTGGGTCCCACACAACCCGGCTCTGGCCGTTGTGCACCAGGCCACGGCCCGCCAGCCGTTCGATCTGTACATCGATTCGGTGCACAACATTCCCGACAACGCAACTATAGTAAAGGTCACCGGGAGGATCCTGCGCTCTGGTGTGGAAGACCTTCCCGACATCCTGGCTCTTCCTGATCTCACTTCCCCGGCAAGAAGCCCGGAGTTTCACTTTCGTATGACCGTGGAAGCGAAAGATCACCAACCCTTCGACCACAACCTGCTCCTCCTGCTGCGAGTCTACACCATCAGTGCGCTCACCGGAGAATTGTGTGTCATAGGGAACTGCATCGTCCGTGCATTCAGTGACCAGGAGCAACTGAACGCAGGGGGGCACCAGCTCCGCCTGCGGGGGGGGATGCCCTCGAAGGATCAGACCCCCCTGACCGATGCGTCCCTCAGTCACCAGCCAGTAATTCCCTGCTGCACCCTCCTCATCCGAATCCTACCACACAGGCCTGATGTGTCACCCTCTCCAGACTATCGCAGTGGCTTTTACTTCACCGACAGAGCCAAACCCAACCAATCAGAGCTGGGAATCATCTCCACCTTCCAGAGGAACACTGAGTTCCCTAGAACCGTAGGCGAGATGGTTCAACAGCTGGTGACCAAGGAGCAGGCCAACGATGGCCTGTACGTGAATGCCTTTGCCAGAGTCCTGAGAGGATTTGAAAGTTCCCATCTCCCCGAGCTGCCCCAGGGCTGGGGAGGCGAGGAGAAGTTTGTGACCCGTCGCCACGATTTCCGCAGCCTGCAGATGTCCCCGCGCTGGACCGATCAGTCTACGGTGCTGCACCCCTACCTCCATCCCCACACGGTGCTGCTGGTCCAGCTGTTCGGTCTCAGTGCTGTTTACATCCCGGACCTCCGTGGGCAGAGCTGTGGCACAGTGAGTTCCCGACCCGGACACGAGTTGAAGCTGGACACCAATTCACAGCTGGGCTGGGCCGTGGTCCCACTGTTCGACGGGCCTTTTGCGTGGATTGGGGTTCACCATTCGCCGCTTTTTCAGGGCAACCCCAACGGTGGCTTCCTGGCGGCCGTGGTGTCTGGCCCACCGCAAGGCGCCATCGAGAGCGGCCTGAGAGACAAGACGCTCAAGCCGCTGAAGAGCTTCGGCAGCGTGACCGTGGAGGTGTGGGATGGGCACTATCTTGATGATGAACGCCACGATCTGCCTATAGTTGACAGCCTCCTCCCCATGGACAACAAGAAGAAGTTTGCGAAGACACAGGCCAGAAAGGCAGGTAAAGCCCTGTCCCAGCTGGTCCTGCAGAGTCTTGACGCCAAAACAAGGAAGCAGGGAGTCGGCAGCGCGGAGTATCGGCGAGAGGAGCATTTCTATGAGGAGGCGATGGGAGACACCTTCTACGCCCTCATGGTGGCGCGCCGCTCCAGACTCCAGGCTGACGGGCCCAGTGCCCAGCCAGGCAGTGCGCTCTGCTCAGTGGCGCCGCTACGGGCCCTGGCGGCGAGGCCCGGCCGTCGCAGCCTGATCACAGCCCTCATGACCACGGAGCAGCCAATCGGCGCCGGGAGGCAGAAGTGTCCCTGCGGCCGCCATTAA
>TU193483
GTTTCCATTCCTGCTCCTCTGAGTGATATCCTACCAACCGGGCTGAAGGATGTATCTGTCAGCTTGATTCTGCGGCCGCCGACAACGACTACCGCACATCACTCTTGGCTGAAGGATTTCGATCCCCTGGCAGTCCGGCTCACCGCTTCGGTGTTTTATGGTGACGTGAAGCTCCGTTCCAAATCCAGTCTCAAAAAGCCATCTGTTGAGAAAAGGGTgccaga

Function

GO:

id name namespace
GO:0045743 positive regulation of fibroblast growth factor receptor signaling pathway biological_process
GO:0010647 positive regulation of cell communication biological_process
GO:0008543 fibroblast growth factor receptor signaling pathway biological_process
GO:0023056 positive regulation of signaling biological_process
GO:0009967 positive regulation of signal transduction biological_process
GO:0040036 regulation of fibroblast growth factor receptor signaling pathway biological_process
GO:0044344 cellular response to fibroblast growth factor stimulus biological_process
GO:0071774 response to fibroblast growth factor biological_process
GO:0007169 transmembrane receptor protein tyrosine kinase signaling pathway biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005685 True 3663 mRNA 0.58 26 7109218 7145807
TU193483 False 224 lncRNA 0.53 2 7139180 7139794

Neighbor

gene id symbol gene type direction distance location
AMCG00005684 LOC107747042,LOC107744626,LOC107699258,LOC107693951,LOC103378375,LOC104941230,LOC107726096,LOC103364401 coding downstream 1444 7102290 ~ 7107774 (-)
AMCG00005679 med13a,LOC104957374 coding downstream 31914 7053710 ~ 7077304 (-)
AMCG00005680 ints2,LOC107744627 coding downstream 60736 7037683 ~ 7048482 (-)
AMCG00005677 NA coding downstream 72162 7024185 ~ 7037056 (-)
AMCG00005676 NA coding downstream 86320 7017945 ~ 7022898 (-)
AMCG00005683 rps6kb1b,LOC108443350,LOC107701421 coding upstream 11390 7157197 ~ 7169389 (-)
AMCG00005689 NA coding upstream 69546 7215353 ~ 7215643 (-)
AMCG00005687 NA coding upstream 84099 7229906 ~ 7232875 (-)
AMCG00005688 cltc,cltcb,LOC108443353,LOC105907438 coding upstream 98143 7243950 ~ 7276480 (-)
AMCG00005659 NA coding upstream 135813 7281620 ~ 7292372 (-)
G153638 NA non-coding downstream 55659 7052805 ~ 7053559 (-)
G153586 NA non-coding downstream 173542 6935430 ~ 6935676 (-)
G153514 NA non-coding downstream 446722 6647316 ~ 6662496 (-)
G153487 NA non-coding downstream 545648 6560939 ~ 6563570 (-)
G153379 NA non-coding downstream 852046 6240402 ~ 6257172 (-)
G153678 vmp1,LOC105021956,LOC107728773 non-coding upstream 33821 7179628 ~ 7202286 (-)
G153681 NA non-coding upstream 132697 7278504 ~ 7278765 (-)
G153742 NA non-coding upstream 728980 7874787 ~ 7875042 (-)
G153778 cct6a non-coding upstream 836223 7982030 ~ 7983931 (-)
G153779 NA non-coding upstream 838433 7984240 ~ 8021640 (-)
AMCG00005674 NA other downstream 612647 6490255 ~ 6496571 (-)
AMCG00005628 LOC107090330,LOC102220786 other downstream 875190 6232159 ~ 6234028 (-)
G153342 NA other downstream 1026352 6081235 ~ 6082866 (-)
G153130 NA other downstream 1807020 5300769 ~ 5302198 (-)
AMCG00005539 NA other downstream 2816347 4284717 ~ 4292871 (-)
G153733 auts2 other upstream 639747 7785554 ~ 7788321 (-)
AMCG00005704 NA other upstream 853529 7999336 ~ 8001405 (-)
G153806 NA other upstream 945941 8091748 ~ 8124685 (-)
G154142 NA other upstream 1944615 9090422 ~ 9092573 (-)
G154250 NA other upstream 2279483 9425290 ~ 9434940 (-)

Expression


Co-expression Network