AMCG00005687


Basic Information

Item Value
gene id AMCG00005687
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 7229906 ~ 7232875 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005687
ATGGCCGAGAATGGAGCAGACTGCGATGTACCTCAGAAGCGCTCGGGACCAGCCAAGGAGCTGCAGAACGGGAACTTCGCAGacGCCTCATCTCTGAGCGAGAGGAAGCAGCGCGATAAAGAGGAGAGGCTGGCCATCGTGCTGTGGAAGCAGCCACTCATCACCCTGCAGTATTTCTTCCTCGAGACCCTGATAGACTTGAAAGAATGGACAGTAAAGCTATGGCATCGGAGAGGCTTGGTTTTCACTGCGTTGGTGCTTTTTATCTTCTTCTCTGTTGCTTATTCCATCGAAGGAGTACATCAGAAGTTTGTGCAGTACATggagaggaagttcctgtggtGCGCCTATTGGGTAGGCCTGGGCATCCTGTCTTCATTTGGCCCcgtttataattaa

Function

GO:

id name namespace
GO:0033116 endoplasmic reticulum-Golgi intermediate compartment membrane cellular_component
GO:0005774 vacuolar membrane cellular_component
GO:0005783 endoplasmic reticulum cellular_component
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005687 True 399 mRNA 0.51 5 7229906 7232875

Neighbor

gene id symbol gene type direction distance location
AMCG00005689 NA coding downstream 14263 7215353 ~ 7215643 (-)
AMCG00005683 rps6kb1b,LOC108443350,LOC107701421 coding downstream 60517 7157197 ~ 7169389 (-)
AMCG00005684 LOC107747042,LOC107744626,LOC107699258,LOC107693951,LOC103378375,LOC104941230,LOC107726096,LOC103364401 coding downstream 122132 7102290 ~ 7107774 (-)
AMCG00005679 med13a,LOC104957374 coding downstream 152602 7053710 ~ 7077304 (-)
AMCG00005680 ints2,LOC107744627 coding downstream 181424 7037683 ~ 7048482 (-)
AMCG00005688 cltc,cltcb,LOC108443353,LOC105907438 coding upstream 11075 7243950 ~ 7276480 (-)
AMCG00005659 NA coding upstream 48745 7281620 ~ 7292372 (-)
AMCG00005698 NA coding upstream 234816 7467691 ~ 7468500 (-)
AMCG00005691 caln1,LOC107716051,LOC107659935,LOC107582596,LOC107672359,LOC107554278,LOC103034584 coding upstream 588319 7821194 ~ 7828552 (-)
AMCG00005692 caln1,LOC108277467,LOC107582596,LOC107554278,LOC107672359 coding upstream 619791 7852666 ~ 7869220 (-)
G153678 vmp1,LOC105021956,LOC107728773 non-coding downstream 27620 7179628 ~ 7202286 (-)
G153638 NA non-coding downstream 176347 7052805 ~ 7053559 (-)
G153586 NA non-coding downstream 294230 6935430 ~ 6935676 (-)
G153514 NA non-coding downstream 567410 6647316 ~ 6662496 (-)
G153487 NA non-coding downstream 666336 6560939 ~ 6563570 (-)
G153681 NA non-coding upstream 45629 7278504 ~ 7278765 (-)
G153742 NA non-coding upstream 641912 7874787 ~ 7875042 (-)
G153778 cct6a non-coding upstream 749155 7982030 ~ 7983931 (-)
G153779 NA non-coding upstream 751365 7984240 ~ 8021640 (-)
G153980 NA non-coding upstream 1341317 8574192 ~ 8588222 (-)
AMCG00005685 NA other downstream 84099 7109218 ~ 7145807 (-)
AMCG00005674 NA other downstream 733335 6490255 ~ 6496571 (-)
AMCG00005628 LOC107090330,LOC102220786 other downstream 995878 6232159 ~ 6234028 (-)
G153342 NA other downstream 1147040 6081235 ~ 6082866 (-)
G153130 NA other downstream 1927708 5300769 ~ 5302198 (-)
G153733 auts2 other upstream 552679 7785554 ~ 7788321 (-)
AMCG00005704 NA other upstream 766461 7999336 ~ 8001405 (-)
G153806 NA other upstream 858873 8091748 ~ 8124685 (-)
G154142 NA other upstream 1857547 9090422 ~ 9092573 (-)
G154250 NA other upstream 2192415 9425290 ~ 9434940 (-)

Expression


Co-expression Network