AMCG00005692 (caln1,LOC108277467,LOC107582596,LOC107554278,LOC107672359)


Basic Information

Item Value
gene id AMCG00005692
gene name caln1,LOC108277467,LOC107582596,LOC107554278,LOC107672359
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 7852666 ~ 7869220 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005692
ATGCTGCTTTGGGAGAAGCCCACAATTGGGAGGCAGACAGAAGGACTGAGCCGTCCAGGGACAGCCTCCCTCGCGCTCTCTGAGTTGCTGCTCCGACAGATGGAGGTCACGGGCGCGCCTAAGAGGGGAGGTTCAGAGGGAGAGGGACCATGGACCTTGTGCGATGGGATGGAGGCTCAGCAGACACAGCCAGTGGTGCTGCGGTACCCGATAGAGTATGGTCCATGTCCTGGCCTGGGTCAGTACTCGGGCCTCATAGCTGCGGTGTCCAAGGTCCAATCCAACAGTAACTCAAACACCTGCTTCATAAAATCTATTGGAGCTGAGATCCATATCTCTGGGGGGAAGATGCCATTCCACCATGTGACGGCCGGCCTGCTGTACAAAGGGAATTACCTCAGCCGCTCGCTGTCCGAGGGGAGCGACAGCGAGCGATTAGCCAGCATCTCGGTGGAGGAGCTCGATGAGATCCGGGAGGCCTTCCGGGTGCTGGACCGCGATGGCAACGGGTTCATTTCCAAGCAGGAGCTGGGCATGGCCATGCGGTCGCTGGGGTACATGCCCAGCGAGGTGGAACTGGCCATAATCATGCAGCGGCTGGACATGGATGGAGACGGCCAGGTGGACTTCGACGAATTCATGACGATACTGGGCCCCAAACTTCTGTCTTCCGAAACGAGAGAAGGGTTCCTCGGCAACACGATAGACAGCATATTCTGGCAGGTAGGCGCGGGGCGGGAACGGACTCTGTCAGCCTCAGTGGCGGTTACTGAAAGTGTGATGTGGGGGAATTAG

Function

symbol description
caln1 Predicted to enable calcium ion binding activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in brain; pronephric duct; retinal ganglion cell layer; and spinal cord. Orthologous to human CALN1 (calneuron 1).

NR:

description
PREDICTED: calcium-binding protein 8 isoform X1

GO: NA

KEGG:

id description
K23849 CABP7_8, CALN2_1; calcium-binding protein 7/8

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005692 True 795 mRNA 0.58 5 7852666 7869220

Neighbor

gene id symbol gene type direction distance location
AMCG00005691 caln1,LOC107716051,LOC107659935,LOC107582596,LOC107672359,LOC107554278,LOC103034584 coding downstream 24114 7821194 ~ 7828552 (-)
AMCG00005698 NA coding downstream 384166 7467691 ~ 7468500 (-)
AMCG00005659 NA coding downstream 560294 7281620 ~ 7292372 (-)
AMCG00005688 cltc,cltcb,LOC108443353,LOC105907438 coding downstream 576186 7243950 ~ 7276480 (-)
AMCG00005687 NA coding downstream 619791 7229906 ~ 7232875 (-)
AMCG00005718 NA coding upstream 27126 7896346 ~ 7901372 (-)
AMCG00005715 LOC102799651,LOC107659914,LOC104957508 coding upstream 49459 7918679 ~ 7950134 (-)
AMCG00005716 NA coding upstream 84911 7954131 ~ 7966260 (-)
AMCG00005717 psph coding upstream 106838 7976058 ~ 7977780 (-)
AMCG00005702 phkg1,LOC107677094,LOC107747678 coding upstream 120136 7989356 ~ 7999100 (-)
G153681 NA non-coding downstream 573901 7278504 ~ 7278765 (-)
G153678 vmp1,LOC105021956,LOC107728773 non-coding downstream 650380 7179628 ~ 7202286 (-)
G153638 NA non-coding downstream 799107 7052805 ~ 7053559 (-)
G153586 NA non-coding downstream 916990 6935430 ~ 6935676 (-)
G153514 NA non-coding downstream 1190170 6647316 ~ 6662496 (-)
G153742 NA non-coding upstream 5567 7874787 ~ 7875042 (-)
G153778 cct6a non-coding upstream 112810 7982030 ~ 7983931 (-)
G153779 NA non-coding upstream 115020 7984240 ~ 8021640 (-)
G153980 NA non-coding upstream 704972 8574192 ~ 8588222 (-)
G154010 NA non-coding upstream 860583 8729803 ~ 8730149 (-)
G153733 auts2 other downstream 64345 7785554 ~ 7788321 (-)
AMCG00005685 NA other downstream 706859 7109218 ~ 7145807 (-)
AMCG00005674 NA other downstream 1356095 6490255 ~ 6496571 (-)
AMCG00005628 LOC107090330,LOC102220786 other downstream 1618638 6232159 ~ 6234028 (-)
G153342 NA other downstream 1769800 6081235 ~ 6082866 (-)
AMCG00005704 NA other upstream 130116 7999336 ~ 8001405 (-)
G153806 NA other upstream 222528 8091748 ~ 8124685 (-)
G154142 NA other upstream 1221202 9090422 ~ 9092573 (-)
G154250 NA other upstream 1556070 9425290 ~ 9434940 (-)
AMCG00005850 NA other upstream 2426379 10295599 ~ 10352782 (-)

Expression


Co-expression Network