AMCG00005703 (LOC108424094,LOC105905016,LOC103377858)


Basic Information

Item Value
gene id AMCG00005703
gene name LOC108424094,LOC105905016,LOC103377858
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 8037028 ~ 8066223 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005703
ATGGTGTTGGCCGTCCAGCAGACAGGGATCAGACAGAGGACTCCGGAGATGATGAAGACCACGCCCGCTGTGATGCCCACCTTGGCTTTCGATGACTCGTCCTCCACGCAGTTGACGTTCAAAGAATTCTCCACGAAGATGTCTGAAGAAGAGGGATATGAGAAAAGGATAGTGGAGGGAGCTGAGGGCTTAACAACGCACGACATCAGGGTGAAGCACCTGTCGGCACTGGAACTGGTCCGACTGGTTTTGGGTGCTGTTACAGTGGGCTTCGGCGTGAAGGACACGTTTCAGACGGGGACGGGCCCTTCACACCTTCAACGGCCCCCTGTTTCAGCTCTCCAGGGGGTGGGGGACAACAACAAGGAAGGGCATGACAGAAAGTGCACCAACTGCACGGAGGACGAGGCCAGCAAGCCCAGGATCATCGTGAGCTCAGGGGTGACCTTCATCGTGGCGGGGCTGCTGCAGCTCACCGCCGTCTCCTGGACTGCCAACGTCATCATCGTGGACTTCTACGACCCGCTGCTGGAGGAGACGCAGAAGAGGGAGTTCGGGAACTCCCTGTACTTCGGCTGGGTTGCCTCCTGTCTCTTGGTCCTCGGGGGAGCCCTGCTCTGCTGCTCCTGTCCACCCAAGCAGCACAGATACGGCCCATCCAGAGTGGCTTACTCGGTGGCAAAGCTCACCTCGGCCACCAGCCACGACATGAAAGACTACTGCACCAACTGCATCGAGGAGCAGTCCAACAAGTCCAAGGTGATGATCGTGTGTGGGGTGACGTTCATCGTGGCCTCCCTCATGCAGCTGGTGCCCATCTGCTGGTCTGCCAACACCATCGTCAGGGAGTTCTACAGCCCCATCATCCCCGATGCACAGAAACGGGAGATCGGCGCCTCCCTGTATGTGGGCTGGGCCGCCGCCGCCCTGCTGCTCATGGGGGGGTCCCTGCTGTGCTGCAGCTGCCCCCAAAACGAGGTCAAATACAACCCCCCCAGGATGGCCTATTCCACCAGCAGGTCCATGGCCCCCAGTGGCTATGACCGGAGAGATTACTGCACCAACTGCATCGAGGACGAGGCCTCCAAGGCGAAGGTGATGATCATCTCGGGCATCCTCTTCATCATCTCCGGCGTCATGCAGCTCATCCCCGTGTGCTGGTCGGCCAACACCATCATCAGGGACTTCTACAACCCCCTGCTGAATGACGCCCAGCGACGGGAGCTGGGCGCCTCTCTGTACATCGGCTGGGGCGCCGCCACCTTACTCCTGATCGGGGGGGCACTGCTCTGCTGCTCCTGTCCCCCCCGAGAAAAGAAGTACATGCCCTCAAGGATGGCTTACTCTGCCCCCAGGTCTGCAGGTGGGGGTTACGACAAGAAAGACTACGTCTGA

Function

NR:

description
PREDICTED: claudin-3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005703 True 1395 mRNA 0.60 8 8037028 8066223

Neighbor

gene id symbol gene type direction distance location
AMCG00005701 abhd11,LOC107715343 coding downstream 11316 8023532 ~ 8025712 (-)
AMCG00005702 phkg1,LOC107677094,LOC107747678 coding downstream 37928 7989356 ~ 7999100 (-)
AMCG00005717 psph coding downstream 59248 7976058 ~ 7977780 (-)
AMCG00005716 NA coding downstream 70768 7954131 ~ 7966260 (-)
AMCG00005715 LOC102799651,LOC107659914,LOC104957508 coding downstream 86894 7918679 ~ 7950134 (-)
AMCG00005734 NA coding upstream 36722 8102945 ~ 8104214 (-)
AMCG00005733 NA coding upstream 38243 8104466 ~ 8107046 (-)
AMCG00005706 LOC108431303,LOC105027537,LOC106602836,LOC103362281 coding upstream 279937 8346160 ~ 8363063 (-)
AMCG00005724 mettl16,LOC102789714,LOC107585611 coding upstream 311013 8377236 ~ 8398525 (-)
AMCG00005729 NA coding upstream 338134 8404357 ~ 8404870 (-)
G153779 NA non-coding downstream 15388 7984240 ~ 8021640 (-)
G153778 cct6a non-coding downstream 53097 7982030 ~ 7983931 (-)
G153742 NA non-coding downstream 161986 7874787 ~ 7875042 (-)
G153681 NA non-coding downstream 758263 7278504 ~ 7278765 (-)
G153678 vmp1,LOC105021956,LOC107728773 non-coding downstream 834742 7179628 ~ 7202286 (-)
G153980 NA non-coding upstream 507969 8574192 ~ 8588222 (-)
G154010 NA non-coding upstream 663580 8729803 ~ 8730149 (-)
G154126 NA non-coding upstream 921058 8987281 ~ 9024879 (-)
G154150 NA non-coding upstream 1029448 9095671 ~ 9108363 (-)
G154157 blmh,LOC106612652 non-coding upstream 1062547 9128770 ~ 9139826 (-)
AMCG00005704 NA other downstream 35623 7999336 ~ 8001405 (-)
G153733 auts2 other downstream 248707 7785554 ~ 7788321 (-)
AMCG00005685 NA other downstream 891221 7109218 ~ 7145807 (-)
AMCG00005674 NA other downstream 1540457 6490255 ~ 6496571 (-)
AMCG00005628 LOC107090330,LOC102220786 other downstream 1803000 6232159 ~ 6234028 (-)
G153806 NA other upstream 25525 8091748 ~ 8124685 (-)
G154142 NA other upstream 1024199 9090422 ~ 9092573 (-)
G154250 NA other upstream 1359067 9425290 ~ 9434940 (-)
AMCG00005850 NA other upstream 2229376 10295599 ~ 10352782 (-)
AMCG00005862 NA other upstream 2477311 10543534 ~ 10551355 (-)

Expression


Co-expression Network