AMCG00005706 (LOC108431303,LOC105027537,LOC106602836,LOC103362281)


Basic Information

Item Value
gene id AMCG00005706
gene name LOC108431303,LOC105027537,LOC106602836,LOC103362281
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 8346160 ~ 8363063 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005706
ATGACGAGCGCTTCACTGACTGGCTTCTTGTCTTCCTCTTCCCCCGTCTGCGCAGAGGAGAGCGAGCTGCGCGAGAAGCTGCGCTTGGACCGGGAGGCGGAGCAGAAGCGGGCAGAGGTGACGGCGCCGGTGCTGGCGCCGGTGCTGCCCCTGCGTGTGAACCACGTGACCGGCCGGGGCGAGAGGGCGTGTCCGGAGCAGCACCCCAGCACGGCCCCGCCCCCGCCGCTGCCGCCCCCGCCACCCGTCGCTGTGATCCCCGTCCCGGTGGTGACGGCCAGCCCCGCGGCCACGCCCCACCCCCTGTCCCTGACCCTGCCGGCTGCCCTGCCCGCCGCCCTTTCGCCTCCCGCCGCCCCCCGCCTCAGCCCCCCCAGCAAGGAGGTCCACTCCCCGGCGGCGCCACCCCCCCAGCTGCAGCAGTGCCCCCTGCTGGGCCCCCAGGTCAAAGCCGAGCCCAGCACCCCCCCCCAAGCGGGCAGCcccaagcagcagcagcagcagcagcagcagccggtGATGCCCCCCTACCCTGGCTCCATCATTGCCACCTCCCAGCATGCCCTCCTCTCCCAGGGCGTCTCCCTGCAGGTGCAGCCCGGCGCTGGCGCCCGGCCGGGCAGCTTGGAGGATGCCAGGAACCTGGACCAGAAGAGACGCCCCGGGGGGGCAGGGACAAGAGAAGTACATAACAAGCTTGAAAAAAACAGGCGAGCGCACCTGAAGGAGTGCTTCGAGACGCTGAAGAGGAACATCCCCAACGTGGACGAGAAGAAGACGTCGAACCTGAGCGTGCTGAGGAGTGCCTTGCGGTATATCCAGACCCtgaagaggaaggagaaggagtACGAGCATGAGATGGAGCGCCTGGCCCGGGAGAAGATCGCCACCCAGCAGCGCCTGGCCGAGCTGAAGAACGAGCTGAGCCAGTGGATGGACGTCATGGAGATCGACCGCGTGCTGCGCCAGACCGTCCAGCCCGAGGACGACCAGGCCTCCACCTCCACGGCCTCGGAGGGTGAGGACAACATCGACCAGGACATCGAGGACGAGAGGCTGTCGGCGCTGCCCGCCTCCTTGCCCAAAGTGCCTCAGCTCCTGCCCATCTCGGCGTCTCAGCCCGACATCCTGAAGGCCGTGACCGCCTCGTCCCTGCTGCCCCCGCACCTGTCCCTCCAGCACAAGATGCCCCAGCCGCTGCCCGTCACCCTGCCGCTCACAGCCCAACCCCCGCCCACCGCTGCCCCCCTGCAGGCCCAGACGGCGATGGCCACTCCCACCGTGGTGCCGGCGCACACGCACATCATGACGGCGCCCAGCATGCAGCCCACGGTCATCGCCCACGCTGCCACGGCCTCCCATGCCTCCGTCATCCAGGCGGTCAACCACGTGATCCAGGCGGGCTCCAAGCATATCGCCCACATTGCGCCCTCCTCCTCGAACTCGGTGCAGCTGGCGCCCGCGCCCCAGCCGATCGGCCACATCACAGTGCACCCCGTCACCCACCTGAGCCAGCACCTGCCCACCATCTACCCCCAGCCCGTGGCTGTCACCCAGCCCACCGTGATGAGCCACATCGCCCACACGCTCTCGCACGCCCACGCCCAGGTCAACGGCACGGCGCCCAGCCAGCAGGCCGCTGCCATGGTGGGCAAGCAGACCGCGGTGGGCGCCCAGGTGGTCACTCACCACCCGCAGCTGGTGGGCCAGACGGTGCTCAACCCAGTGACTATGGTGACCATGCCCTCGTTCCCGGTCAGCACCCTCAAGCTGGcctgagagagatagagagatagagagagagagagagagagagaggttattTGTGGActtctaaagaaaaaaaataagaaaagagaaaaaactttaaataaatgataaaaccacaaactgcattaaaaaacaaaattaaaaaggaaaaaaaaaaagttaaccgCAACTCCGTACATTCCGAAAAAAcctgatattattttattttttttaaagtaaaaaaaaagaaaagtaacctaaagaaaaataaaaagagagagagagagcctcgATCAAGTGAACCGAGGTGTTGAAGGGGAGGTGGAGGAGTAGAGCTGGAGTGAGACTTTGAGTAAGACAGCGTATTGAAGCACTATTCTGCCCCGGACTTTGAacaatagtaattataataatattaaaaaaataataaattctaCTTAtactaatggaaaaaaaaaaaagaaaaaaaaatctgcctttctctgtgttttttgtttttatgattatcTTTTGTTGTGTGAAATGACGTTCCCTGTAATAAGGTTTCTGCACATAGCAGCTTACTAACGGCTGTGCGAATGTTTTCTTTAAGTGTAGCCATGTGCATTGAGGATGTAGACGCCAAAACCAGGCGGCTTGGCGACAAGAATATTTTTTATCAtagtttaaaaactaaaagactAAACCATCGATCATGCAGTAACCCTATATTATGTGATGCTGTGGTTAAAATGGACTGTCTGTATCCCCCCTGTTACCTGTAGTCAACGGCTATGGTTTCTCTTCACCGGCCTGAGCTCCCGTACCGAGACAAGACCAGACACCGCACTGTGCTTTACCGCGCTTATGACTTCCTCTCATGGGTTGTGTCATGGTCTTCACACGCCTATCTGTTCTTTTTCCACGATCCCACCGTGGCCGCACTACACTTTGGCTCTGGGTTTACCGTGCCGGTACCACAGTCCAACTTCCTAAAGGCTGAGGGGCACTGCTGTGGTGTGCCAGGGTGGTCTACTGGTCTCGTCCCCATTCTgcaattattaaacaaaagagAGCCGGTCGTTTCCATTCCTCAGCCACCACGGCGGAGAAGACTGTTTCTCTGGCTGCTGTCATTGGCGCTCCTTCGTTTGTTTTTGGCAGGGGTGTCCTCGTCAGGCGGGCATGTGACAAGGTTCCTGCCGGTCTTAGATCAGTAATCTTATTGTGTGCCGTGCTTCCGTGGCACTGCGGTACCCCGCTCCCAGGCCCGCTGCCGCCCACTGCTGGCGGATCGGTGCTGCTGCAGCCAGAGGTGGTGATATTGCACGCATTGCGCAGCATTTCTGAAGCAGTGAAACTAGCTTTGTGTGACTGTTTTGTGGGTTGGAGGAagatgaatttaatcaattataaCTGATTTGCTACAATTGAATTTGCTAGGGGATACAGGACATCCATATTCATGCACTCGATTTGTAAATTAAGATCCGAACCTGTAAGTTTAAGGTCTTCCTTCCTTGCAGTTGTCTAGTTATAGCTTCTTCTCATTAAGCCGGCGAAAAGCATTAGGTCACAGAATTTGGCctaacttgaaaatgtaataaaaaaaatacaatttgccaGCTATGGAAGTGAATGGGAGTCAGTTTCCCATTTTGTTTGAGGACGtattaaatactgaaattgAACCTGTAATTAGCCGATTTGGTGGGAATTGCAGTGGATAGTGAAGGCTGGTGAGCAAGACTGTTCTAGCCCTTGACCAGGAATCACATACGCCTAGATGTTGTGTCTCATCGAGCAagaggtgtttttgtttgttttgtgtagaaTGAGGTTAGTCGTTTGTTTTGAAGTCCTGTTTGGATGGCTTGCACTTGGCAGGATGATAAGAATTTTGTGTACATATTCACAGAAGAGAAATAATGTTGGAAAGTGTCTGGGGAACCAGCGAGTAGGGTCTCCGAGTAGAGCTGCGGGAAGTAAATCTGAGGAAACTTGCCAGTCATGGTCGGCCAGAACGGAAACTGCGTGAGATTCAGTATCCGAAAATAGTTCAAgaaaaaaacccaacaacaaaCACTTGTGCCACTGTCCGCTGAGTACTGATAGTgagtacaaacaaaacacagagggCAAGAGTAACATTGGTAATCAGTACTAACCgtacttagttttttttttttctttcgtagtttttgtgtgtgtttattttcagtggtGCCACGGATGTCCCAGTGTAAGTTTGGCGCTTTTGTTTTCGTACTGCTTGTGTCCCTCAGGGCAGATCGCTCGCCTGAGCTCCTCGGTGGCTCTTGCGGCAGTGTGCTCAGGAAAGATGGACAGCCTTGTGTAGAGGGCTTGTGGAGGAGAGGGGATGGTGGGGTACAACTGCAATACATGAAGAGCCTCTGTAAGCTTTTTTCCTTTGGGacttgtgcgtgtgtgtgcgtgcgtgtgtgtgtgtgtgtgtgtggggtggtggtggtggggggatcaccacaacacaaaaaacaaaacaaaaatgctgcaGGATTTTTACTTGATTAACTCCcttttccccctcccccccatctcATGTAAATCTGTGTCAACAACTACAAGTCTAATCAAACGCTTAGCAGATGAACGACTACAGAAGCCTGTTTGCATTCCACCGCCTGTCGAACGAACTGAAACCCCATGAGGTGCACCTTCAACTCATAGCACTGTGATGCCTGCTGCTCATTGGCTCCTGCAAACTCAGAGTAGTTTTACAGTTGTGCGTAGTGCGCCGATTACAAATTGCGTGAACTTGTTTTCCTGTGTCTTGTTGGTATACGTGTATGtacccgtgtgtgtgtgtatgtgtgtgagtgaccAGGAGgaggagaatatatatattatttttttctaatgtgcgtttttttttttttatggcataATTTTG

Function

NR:

description
PREDICTED: max-binding protein MNT-like

GO: NA

KEGG:

id description
K09115 MNT, ROX; MAX-binding protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005706 True 4660 mRNA 0.53 6 8346160 8363063

Neighbor

gene id symbol gene type direction distance location
AMCG00005733 NA coding downstream 239114 8104466 ~ 8107046 (-)
AMCG00005734 NA coding downstream 241946 8102945 ~ 8104214 (-)
AMCG00005703 LOC108424094,LOC105905016,LOC103377858 coding downstream 279937 8037028 ~ 8066223 (-)
AMCG00005701 abhd11,LOC107715343 coding downstream 320448 8023532 ~ 8025712 (-)
AMCG00005702 phkg1,LOC107677094,LOC107747678 coding downstream 347060 7989356 ~ 7999100 (-)
AMCG00005724 mettl16,LOC102789714,LOC107585611 coding upstream 14173 8377236 ~ 8398525 (-)
AMCG00005729 NA coding upstream 41294 8404357 ~ 8404870 (-)
AMCG00005726 pafah1b1,LOC107585584,LOC107743664,LOC107744786,LOC107664934 coding upstream 41911 8404974 ~ 8417809 (-)
AMCG00005723 cluh coding upstream 79059 8442122 ~ 8461544 (-)
AMCG00005727 NA coding upstream 101227 8464290 ~ 8465156 (-)
G153779 NA non-coding downstream 324520 7984240 ~ 8021640 (-)
G153778 cct6a non-coding downstream 362229 7982030 ~ 7983931 (-)
G153742 NA non-coding downstream 471118 7874787 ~ 7875042 (-)
G153681 NA non-coding downstream 1067395 7278504 ~ 7278765 (-)
G153678 vmp1,LOC105021956,LOC107728773 non-coding downstream 1143874 7179628 ~ 7202286 (-)
G153980 NA non-coding upstream 211129 8574192 ~ 8588222 (-)
G154010 NA non-coding upstream 366740 8729803 ~ 8730149 (-)
G154126 NA non-coding upstream 624218 8987281 ~ 9024879 (-)
G154150 NA non-coding upstream 732608 9095671 ~ 9108363 (-)
G154157 blmh,LOC106612652 non-coding upstream 765707 9128770 ~ 9139826 (-)
G153806 NA other downstream 221475 8091748 ~ 8124685 (-)
AMCG00005704 NA other downstream 344755 7999336 ~ 8001405 (-)
G153733 auts2 other downstream 557839 7785554 ~ 7788321 (-)
AMCG00005685 NA other downstream 1200353 7109218 ~ 7145807 (-)
AMCG00005674 NA other downstream 1849589 6490255 ~ 6496571 (-)
G154142 NA other upstream 727359 9090422 ~ 9092573 (-)
G154250 NA other upstream 1062227 9425290 ~ 9434940 (-)
AMCG00005850 NA other upstream 1932536 10295599 ~ 10352782 (-)
AMCG00005862 NA other upstream 2180471 10543534 ~ 10551355 (-)
AMCG00005839 LOC103367321,LOC107729686,LOC103398303 other upstream 2375481 10738544 ~ 10752114 (-)

Expression


Co-expression Network