AMCG00005715 (LOC102799651,LOC107659914,LOC104957508)


Basic Information

Item Value
gene id AMCG00005715
gene name LOC102799651,LOC107659914,LOC104957508
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 7918679 ~ 7950134 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005715
ATGGCCGCCTCCTGTCGAGGTGTATTGGGCTTGTCAATGATGTCGCTTTGCGTTTCTGTGATTCTGCTGGATCTGACTTTAGGCACTGTGGCCGCTGAAATGGACGACGTGTCGGAGGATGCATGGGGTCTCTTGCACGCCTGTTTCATGTCCGCCTGGCAGAACAGACTGTACCTGTACTCTGTGGCAACTGTCTGCATTGCCACCTGGTTTATCCTTCACAACGTTGTGAAGAAAAagAGTGGAGGATTGTCTGTTCCTGGCCCCACGGCTCTggatgaggaaaaaaaaacgaatggtCGAGCGATCGAGCGGGAGGCCAAGGTTCATGTCTCGGGGGTGAAGATTTTCTACGGCTCTCAGACTGGGACAGCGAAGGGCTTTGCTAAAGAACTGGCCGGAGAGCTGCAGTCTGTGGGCCTGGCTGTGGAGGTGATCGACATGAAGGAGTTTGACCCAGAAGACAGTTTGGCCGAGGAGACCACAAGCAGATCGGTGTGTGTGTTCCTGATGGCCACCTACACCGACGGGCTGCCCACAGAGAACGCCAAGTGGTTCTGCAAGTGGCTGGAGGAGGCCTCCACCGATTTCCGCTACGGCAAGACCTACCTGAAGGGCCTGAGATACGCGGTGTTCGGGCTCGGCAACTCCCTGTACGCCGAGCACTACAATAGGGTGGGCAAGAATGTGGACAAGTGGCTGTGGATGCTGAGTGCCTCCCGGGTGCTGAGCCGGGGGGAGGGCGACAGCAACGTGGCGCAGAGCCGCAACGGCAGCCTGCAGGCCGACTTCGCCGCCTGGAGTTCTCGCCTACTGGGCCGTGTGCAGGCCCTCGCCCGGGGGGAGCGGAAGAGCTGCGGGGGGAAGTGCAAATCGGGGAAGTGCAAGAACGAGAAGAAGCACCAGCGGCAACATGCAGAGGGGTCCGATCTCAACCCCGCCTCGCCCCCAGAGCACAGCTCGGAGGAGGAACTGTTTGAGACCAGCAGTGAGGAAGACTCTGCTCCTGAGGAAGAAGCCGCCCACGGGTCAGTGATTGACGTGGAGGACCTGGGCAACGTCATGAACCACATGAAGAAAGCCAAGGTGAGAACGGCCGAAAACGAGCAGCCACGGTTTGAACGGGGAACGAGGAAAGAGGAGTGGGAAGAGGATCGTGGGAAGGTCAAGTCCAAACCCAGCAGTGGGGGGAGTGAATCCGAAGAACCCAGAGAGATGATTACCCCCGCCTTGAGGAGTGCCCTGACCAAACAAGgATATAGGCTGATAGGAAGCCACTCGGGAGTCAAGCTGTGCCGATGGACCAAGTCCATGCTGAGAGGACGAGGGGGCTGCTACAAGCATACTTTTTATGGGATCGAGTCTCACCGCTGCATGGAGACCACGCCCAGTCTGGCTTGTGCCAACAAATGTGTCTTCTGTTGGAGGCACCACACTAACCCCGTCGGCACCGAGTGGCGCTGGAAAATGGACCCGCCGGAGAAGATCCTGCAGCAGGCCTTGGAGAACCACCAGAACATGATCAGACAGTTCAGAGGGGTTCCCGGTGTGAAGCCAGAGCGATTCGAGGAAGGCCTGGAAGCCCGACACTGCGCCCTCTCCCTGGTCGGGGAGCCCATCATGTACCCTGAGATCAACCGCTTTCTGAATCTGCTCCACCACCACCGGATCTCCAGCTTTCTGGTGACCAACGCACAGTTCCCCGAGGAGATCAGGAGCCTGGAGCCCGTGACACAGCTGTACGTCAGTGTGGACGCCAGCACCAAAGACAGCCTGAAGAAGATCGACCGGCCGCTCTTCAAGGACTTCTGGCAGCGGTTTCAAGACAGCTTGAAGGCCCTCGGGGAGAAGGTAGGGAGTTTAGCGATTCGCAGGGTGGCCGAAATCCCCTGCCGTGTCGAGATCAGAGACCCCATCTGTGTTCTGTGGATAGAGGACGGTGCATTTCCATCACAGACAGCCTCTGCCCACCCCTGGAGAGCCAGAGATTGA

Function

NR:

description
PREDICTED: tRNA wybutosine-synthesizing protein 1 homolog

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0008033 tRNA processing biological_process
GO:0005506 iron ion binding molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0010181 FMN binding molecular_function
GO:0051539 4 iron, 4 sulfur cluster binding molecular_function

KEGG:

id description
K15449 TYW1; tRNA wybutosine-synthesizing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005715 True 1992 mRNA 0.58 14 7918679 7950134

Neighbor

gene id symbol gene type direction distance location
AMCG00005718 NA coding downstream 17307 7896346 ~ 7901372 (-)
AMCG00005692 caln1,LOC108277467,LOC107582596,LOC107554278,LOC107672359 coding downstream 49459 7852666 ~ 7869220 (-)
AMCG00005691 caln1,LOC107716051,LOC107659935,LOC107582596,LOC107672359,LOC107554278,LOC103034584 coding downstream 90127 7821194 ~ 7828552 (-)
AMCG00005698 NA coding downstream 450179 7467691 ~ 7468500 (-)
AMCG00005659 NA coding downstream 626307 7281620 ~ 7292372 (-)
AMCG00005716 NA coding upstream 3997 7954131 ~ 7966260 (-)
AMCG00005717 psph coding upstream 25924 7976058 ~ 7977780 (-)
AMCG00005702 phkg1,LOC107677094,LOC107747678 coding upstream 39222 7989356 ~ 7999100 (-)
AMCG00005701 abhd11,LOC107715343 coding upstream 73398 8023532 ~ 8025712 (-)
AMCG00005703 LOC108424094,LOC105905016,LOC103377858 coding upstream 86894 8037028 ~ 8066223 (-)
G153742 NA non-coding downstream 43637 7874787 ~ 7875042 (-)
G153681 NA non-coding downstream 639914 7278504 ~ 7278765 (-)
G153678 vmp1,LOC105021956,LOC107728773 non-coding downstream 716393 7179628 ~ 7202286 (-)
G153638 NA non-coding downstream 865120 7052805 ~ 7053559 (-)
G153586 NA non-coding downstream 983003 6935430 ~ 6935676 (-)
G153778 cct6a non-coding upstream 31896 7982030 ~ 7983931 (-)
G153779 NA non-coding upstream 34106 7984240 ~ 8021640 (-)
G153980 NA non-coding upstream 624058 8574192 ~ 8588222 (-)
G154010 NA non-coding upstream 779669 8729803 ~ 8730149 (-)
G154126 NA non-coding upstream 1037147 8987281 ~ 9024879 (-)
G153733 auts2 other downstream 130358 7785554 ~ 7788321 (-)
AMCG00005685 NA other downstream 772872 7109218 ~ 7145807 (-)
AMCG00005674 NA other downstream 1422108 6490255 ~ 6496571 (-)
AMCG00005628 LOC107090330,LOC102220786 other downstream 1684651 6232159 ~ 6234028 (-)
G153342 NA other downstream 1835813 6081235 ~ 6082866 (-)
AMCG00005704 NA other upstream 49202 7999336 ~ 8001405 (-)
G153806 NA other upstream 141614 8091748 ~ 8124685 (-)
G154142 NA other upstream 1140288 9090422 ~ 9092573 (-)
G154250 NA other upstream 1475156 9425290 ~ 9434940 (-)
AMCG00005850 NA other upstream 2345465 10295599 ~ 10352782 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
mexican tetra (Astyanax mexicanus) G5861 tyw1,LOC108443711,LOC108278267,LOC107727925,LOC107716137,LOC107659914 non-coding NC_035897.1 CM008300.1 23784094 ~ 23824071 (+)