AMCG00005716


Basic Information

Item Value
gene id AMCG00005716
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 7954131 ~ 7966260 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005716
TTTGCTACCATGTACACTTTATTCCTACTGCACACAAAGGTCCAGTTTGCACAGTCCGGGGTGATTCTGGGGCACTGGTACCCCACGGTGCACAAGGAAAACGGGTTTTACTAGAGACACGGGACGAACCAAGGTGGTGTTCTTattcacactgcacacactactAACACCGATTTCACTTTGAACAAGGAAATACAGTCACATACACAGTTTATTAACCACAAATGTACACAGAAAAGTCAAATATTGACATCAACCCCCCCCAAAGTTCATTTTCAATTCAGACTTCCGAGGTCTTTTCCCCAGTTGTTGGCCCTGCTGTGATGTTCAACTCCTGCAGCTTTTCGATGAGAGATTCGTCAGTAGACGTGGTACAGTCCGAGAGGGGCTCCAGATACAGGCTGCCAGCCACCTGCTTCCTGCTCAGAGGGTCCACAACGCTGCCCACCTTGTACACGATCTCCGCCAGCTCGTGCTTCACGTGCTTTGAGCGCATCTCTGGGAGCGCCTTCAGGAGAACGATGTCCCCCACGGTGCACTGCTCCAGGGAGTCATGCGCAAAATAGGTCTTCCTTTTGTTATAGTACTGCGGAAGATATCTATCCAAAACCAGCCTTGTGACGCGGACCTTGGCCGTCTTTTGCATCTTCGTCCCAATCACCTTCCCGATGACCCATTTCGCGTGGACCGAGGCGTGTTTCACAGACATCGTCGCACTTCCCAGAACCTGTAGAGCGAAACAAAGCCACTCCGGGTGGAAGTCGCGACAACGCCGCTcgcatattgatttatttatcccCAAAAGAGGCGTCGAAATCAAACAGCCCCACAGCACGACAGCGTCACACCCACCATGGACACTGGGGGCTCTGCGGTGTCGTTGAATGTGTCTTTTCCCACGACCAGCGCATAGAAGGAGCCAGGTTGTCGTTACAGTCCAGCGAGCCGCCTTGCCGCTGCTTCCCGCGGCTCCCCGCCTCGACTTTATCCCGGTGCTTTGGCCTTCCTCGGTTCTCCTGGGTGGCGTCGTTAGGGTGTTAAAAGGCTacgttttcaaaaacaaaaatgtcgaTTCTGGGCCTGAAGAAGAAACAGCCAAAGACTTTTAAAGTCAAAGTGATCACTATGGACGCAGATATGGAGTTCAGCTGCGAGgtgaagTGGAAAGGCAAGGATTTGTTTGATCTGGTGTGCCGCACTGTTGGACTAAGGGAGACCTGGTTCTTTGGGCTTCGGTACACCGTGAAGGACACGTATGCCTGGCTGAAACCAGAGAAGAAGGTTCTGGACCAAGAGGTTCCGAAGGAGTATCCGATCACCTTCCACTTCCTGGCCAAGTTTTTCCCAGAGAAGGTGGAGGAGGAGCTTGTGCAGGAAATCACACAACACCTCTTCTTCCTgcagGTGAAAAAGCAGATATTGGATGAGGAAATCTTCTGCTCACCCGAGGCATCTGTGCTTCTGGCGTCCTACGCGGTTCAGGCCAAGTACGGAGATTATGACCCGAATTTTCACAAGCCGGGGTTCCTGGGACAAGATGAGCTGCTGCCTAAACGAcaaaacaagaaagacaCAGAGCTGCTGCTGGGAGTGGACGCCCAGGGCCTCCACATCTACAACCCCAACAGCAAACTGAACCCCAACAAGTCCTTCCCCTGGAGCGGCATCAGGAACATATCCTACAGTGAGAAGGAGTTCACGATTAAACCCCTGGACAAGAAGAAGGAGGTGTTCAAATTTTACTCCTCACAACTCCGAGTCAACAAACTGATCTTGCAGCTGTGCATCGGAAACCACGACTTGTTcatgaggaggaggaaggtggACTCCATCGAGGTCCAGCAGATGAAGGCCCAGGCCAAGGAGGAGAAGGCCAGGAAGAAGATGGAGCGACAGATCCTGGCTCGGGAGAAGCAGATGAGAGAGGAGGCGGAGAGGGCgaaggaggagatggagaggaggCTCTTCCAGCTCCAGGACGAGGCACGCTTGGCCAACGAGGCGCTGATTGCCGAAGAGGAGGCCAAACTGCTGGCCCACAAGGCTGCCGAGGCAGAGCAGGAGCGCCAGCGGCTGGAGGTCACGACCCTGAAGACCAAGGAGGAGAAGCGGCTGATGGAGCAGAAGATGAGGGAGGCCGAGCTGCTGGCAGTGAAGCTGGTGGAAGAGTCAGAGAGACGGTCGAAGGAGGCGGACCACCTCAAGCAGGACCTGAGCGAGGCCAAGGACGCCGAACGTAGAGCCAAGCAGAAGCTGCTGGAAATCACCAAAACCACCTATCCACTCATTGCCGCGTACTCCAGCCCACCTGCGCCCCCCGACGGCGGGGATCTCAATCCGGAGACGGGGTCCATGCGGAGTGATTTCAAAGACACCGACATGAAGAGACTGTCTATGGAGATCGAGAGGGAGAGGCTCGAGTACATGGAGAAGAGCCGACACCTGCAGGACCAGCTGAAGGAGCTGAAGTCGGAGATCGAGTCCCTGAAGCTGGAGGAGCAGCAGGGCGTGTTCCCCCTGAGAGGCGAGGCCAGGGCGTACCCCGAACCCGCCTACCTGCCCCACGCCACCCGCAATTCCGCCTACATGGATCAGATGTCCTACCTGGAGGAGGTGTGATCTGCTCTTCCGGATATAAAGAGGAGGTGCAGAGACTCCAGAGAACTGTCGCCCTTTTTTATACAGTCCTTTGTATATAAACACTAATGAACGTTAGAACATTTCAATATGGTGTGTATTTCAATATCATGCTGGGAAACCTAGCTAGACTGGGTTAAAGTCACCCCGATTTCATACGGAGTGGCCAACAgataaaattaattcaaatgaatcGTTAAACaagcctttttaattaaaaaaaaaaaagtgaaaacttCTTAATTTGGTTCTTTGCATAAtcagatttttatattatttgaagattacaatgtaaaattgtataagtGTTTTGTCCAGGTTTTGCTGTAGGTTAACAATGCTGGTTCACCTGGACATCTATAACGTTTGGAAAGTTATTGGGAGAACCTTTGTTTCCCATCGGTTTACCTTCATAGCCACCATTTTGCCCAACTCCACGCAGGCTGTTCGGCCGGGGGAATTAATTAAGCGAGGCAATGCCTATTCTCCGAGTCCCAAATGACACTGTGTAAGCAGTCTCTGTTTGTCCTCGCCTGTATTGGGGAACACTGAAGCCATTATCCTGTTTGCTAACGTGTAATCCTGTATTTATAGACGCGGAACACTTGTTCTTTAAAATGAGCACGAGGCTTTTGAGCATATTTTATATCTTTGATTTGTAAGAAACGTATTTTTCTACACTGTACACGCGGGGTGCCGAAGACTTTTTATACGGATCTTAAACCCGTGATTCAGTCTCGCCAaatcaagcattttttttttatgaaaccctttttattgcttggaatctttatttttcaaacgaAGTGCCTTACGATAGAATTGCTGTCCTTGTGACAACGGTGCGGTTTATTATTGAACTTATTTTCTACCGAGCTTTCTGTCAACCCTTTGCGAACCAGTCAACTTGCCCTCTAGGGGACCTTAGAGAGTGACGCCGACCATTCCTACACTGTCTTCTCGTAATGACAATGGAGCTTCAAACAACCAggtttaaagtttatttttataacgtAAACGAATATAAACCCGTCGGGTCCGTGAGTACGTCCGTGTTCGTTGAAGCCTGTTGGCTCTGAGAAAGGGAAGGACGCCCCAATGCGAGAGGCTGTAGCTGGATAGAAATAGACAACTTGAAACGCTTGACTGTCACATGACCAGAGCGCATGGGTTCACCATGTCTGTAGGTGTCATGTAAAGCTTTGAATATAAAAGCCATGTAAATGGATAAAACTGACATGTAGCTGGAGGTTGAACCGTTCTCGATTGACTATGCTAAAGCCAGGATGTTTATCAATCTCCATTTACTCAGGATTGAGGTTTAATCTTTTACCAGATCACTGATGTATCATTAGTAAATGTGGAAACGTCACGCCAAGTGTGTGTTCAATACTCATCTGCCAAACACTACAACTAGTCTAAAGCCCACAAAGCTGTCccgtatttattgtatttattttctatatattttcagtgaaaCGTCGTAAAACGTCACTTTAATCAGTAAGGgttaatattcatgttttaatgaatgatCACAGCTAGGTTTGCATACCCTTCAAGAAAGCAATACCTCAGACTGTACTCACACTATATCTGCACTTCAGCATGTTAGTGTTAATGCTTCATTGGGGTTTACACGCATTTATGAGTAGAATAGAAGATTCCACGTGCCTACAACGTTTCACTACGTTAGAAAAGTCTTAAACACACGGACGTGTATCGATTCCTGTGTGTTGTCTTCCTGTGGAGGGTTTCTGGTGTGGGGATGGGAGGAGCTGTGCCTTGTGTCATGCTGTTAACATGTTGCACACCAATAAAAATCGCCTCTGACCAA

Function

GO:

id name namespace
GO:0008285 negative regulation of cell population proliferation biological_process
GO:0005856 cytoskeleton cellular_component
GO:0019898 extrinsic component of membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003779 actin binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005716 True 4474 mRNA 0.49 17 7954131 7966260

Neighbor

gene id symbol gene type direction distance location
AMCG00005715 LOC102799651,LOC107659914,LOC104957508 coding downstream 3997 7918679 ~ 7950134 (-)
AMCG00005718 NA coding downstream 52759 7896346 ~ 7901372 (-)
AMCG00005692 caln1,LOC108277467,LOC107582596,LOC107554278,LOC107672359 coding downstream 84911 7852666 ~ 7869220 (-)
AMCG00005691 caln1,LOC107716051,LOC107659935,LOC107582596,LOC107672359,LOC107554278,LOC103034584 coding downstream 125579 7821194 ~ 7828552 (-)
AMCG00005698 NA coding downstream 485631 7467691 ~ 7468500 (-)
AMCG00005717 psph coding upstream 9798 7976058 ~ 7977780 (-)
AMCG00005702 phkg1,LOC107677094,LOC107747678 coding upstream 23096 7989356 ~ 7999100 (-)
AMCG00005701 abhd11,LOC107715343 coding upstream 57272 8023532 ~ 8025712 (-)
AMCG00005703 LOC108424094,LOC105905016,LOC103377858 coding upstream 70768 8037028 ~ 8066223 (-)
AMCG00005734 NA coding upstream 136685 8102945 ~ 8104214 (-)
G153742 NA non-coding downstream 79089 7874787 ~ 7875042 (-)
G153681 NA non-coding downstream 675366 7278504 ~ 7278765 (-)
G153678 vmp1,LOC105021956,LOC107728773 non-coding downstream 751845 7179628 ~ 7202286 (-)
G153638 NA non-coding downstream 900572 7052805 ~ 7053559 (-)
G153586 NA non-coding downstream 1018455 6935430 ~ 6935676 (-)
G153778 cct6a non-coding upstream 15770 7982030 ~ 7983931 (-)
G153779 NA non-coding upstream 17980 7984240 ~ 8021640 (-)
G153980 NA non-coding upstream 607932 8574192 ~ 8588222 (-)
G154010 NA non-coding upstream 763543 8729803 ~ 8730149 (-)
G154126 NA non-coding upstream 1021021 8987281 ~ 9024879 (-)
G153733 auts2 other downstream 165810 7785554 ~ 7788321 (-)
AMCG00005685 NA other downstream 808324 7109218 ~ 7145807 (-)
AMCG00005674 NA other downstream 1457560 6490255 ~ 6496571 (-)
AMCG00005628 LOC107090330,LOC102220786 other downstream 1720103 6232159 ~ 6234028 (-)
G153342 NA other downstream 1871265 6081235 ~ 6082866 (-)
AMCG00005704 NA other upstream 33076 7999336 ~ 8001405 (-)
G153806 NA other upstream 125488 8091748 ~ 8124685 (-)
G154142 NA other upstream 1124162 9090422 ~ 9092573 (-)
G154250 NA other upstream 1459030 9425290 ~ 9434940 (-)
AMCG00005850 NA other upstream 2329339 10295599 ~ 10352782 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
mexican tetra (Astyanax mexicanus) G119675 nf2b,LOC108427981,LOC108279066,LOC107548212,LOC107756147,LOC107700034,LOC107715353 non-coding NC_035910.1 CM008313.1 5858225 ~ 5866943 (-)