AMCG00005717 (psph)


Basic Information

Item Value
gene id AMCG00005717
gene name psph
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 7976058 ~ 7977780 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005717
ATGACCACCCAGCTGGAGACGAAGGAGATATTCCGCAGCGCTGATGCTGTGTGTTTCGACGTGGACAGCACTGTGATCAAAGAAGAGGGGATCGACGAGCTGGCCAAGTTCTGCGGAGTGGGGGATGCAGTCACGGAAATGACTCGCAAAGCTATGGGAGGCTCAATGACTTTTAAGACCGCGTTAACAGAACGTCTTGCCATCATCAGATGTTCCCGCGAACAAGTGAACAAGCTCATCACAGACCACCCTCCCCATTTAACTCCAGGCATTAAGGAGCTGGTGGCCTGTCTCCAGCAGCGGGGTGTGAAGGTGTTCCTGATCTCCGGAGGGTTCCGCTGCATCGTGGAGCACGTGGCCACGCAGCTCAACATCCCCCTCGACCACGTGTACGCCAACCGCCTCAAGTTCTACTTCAAcgGCGAGTACGCCGGGTTCGACGAGTCGCAGCTGACGGCCGAGTCGGGGGGGAAAGGGAGGGTCATCAGTCACCTGAGGGAGAAGTTCGGTCTGGAGACGGTGGTGATGATCGGAGACGGAGCCACGGACCTGGAGGCCTGCCCCCCAGCGAACGCCTTCATCGGGTTTGGGGGGAACGTGGTGAGGCCCCAGGTGAAGGAGAAGAGCACGTGGTACGTCACAGCTTTTGGGGAACTCCTCAAAGAACTGGAGAAGCTATAA

Function

symbol description
psph Predicted to enable magnesium ion binding activity and phosphoserine phosphatase activity. Predicted to be involved in L-serine biosynthetic process and dephosphorylation. Predicted to act upstream of or within cellular amino acid biosynthetic process. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in PSPH deficiency. Orthologous to human PSPH (phosphoserine phosphatase).

NR:

description
PREDICTED: phosphoserine phosphatase isoform X2

GO: NA

KEGG:

id description
K01079 serB, PSPH; phosphoserine phosphatase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005717 True 681 mRNA 0.58 5 7976058 7977780

Neighbor

gene id symbol gene type direction distance location
AMCG00005716 NA coding downstream 9798 7954131 ~ 7966260 (-)
AMCG00005715 LOC102799651,LOC107659914,LOC104957508 coding downstream 25924 7918679 ~ 7950134 (-)
AMCG00005718 NA coding downstream 74686 7896346 ~ 7901372 (-)
AMCG00005692 caln1,LOC108277467,LOC107582596,LOC107554278,LOC107672359 coding downstream 106838 7852666 ~ 7869220 (-)
AMCG00005691 caln1,LOC107716051,LOC107659935,LOC107582596,LOC107672359,LOC107554278,LOC103034584 coding downstream 147506 7821194 ~ 7828552 (-)
AMCG00005702 phkg1,LOC107677094,LOC107747678 coding upstream 11576 7989356 ~ 7999100 (-)
AMCG00005701 abhd11,LOC107715343 coding upstream 45752 8023532 ~ 8025712 (-)
AMCG00005703 LOC108424094,LOC105905016,LOC103377858 coding upstream 59248 8037028 ~ 8066223 (-)
AMCG00005734 NA coding upstream 125165 8102945 ~ 8104214 (-)
AMCG00005733 NA coding upstream 126686 8104466 ~ 8107046 (-)
G153742 NA non-coding downstream 101016 7874787 ~ 7875042 (-)
G153681 NA non-coding downstream 697293 7278504 ~ 7278765 (-)
G153678 vmp1,LOC105021956,LOC107728773 non-coding downstream 773772 7179628 ~ 7202286 (-)
G153638 NA non-coding downstream 922499 7052805 ~ 7053559 (-)
G153586 NA non-coding downstream 1040382 6935430 ~ 6935676 (-)
G153778 cct6a non-coding upstream 4250 7982030 ~ 7983931 (-)
G153779 NA non-coding upstream 6460 7984240 ~ 8021640 (-)
G153980 NA non-coding upstream 596412 8574192 ~ 8588222 (-)
G154010 NA non-coding upstream 752023 8729803 ~ 8730149 (-)
G154126 NA non-coding upstream 1009501 8987281 ~ 9024879 (-)
G153733 auts2 other downstream 187737 7785554 ~ 7788321 (-)
AMCG00005685 NA other downstream 830251 7109218 ~ 7145807 (-)
AMCG00005674 NA other downstream 1479487 6490255 ~ 6496571 (-)
AMCG00005628 LOC107090330,LOC102220786 other downstream 1742030 6232159 ~ 6234028 (-)
G153342 NA other downstream 1893192 6081235 ~ 6082866 (-)
AMCG00005704 NA other upstream 21556 7999336 ~ 8001405 (-)
G153806 NA other upstream 113968 8091748 ~ 8124685 (-)
G154142 NA other upstream 1112642 9090422 ~ 9092573 (-)
G154250 NA other upstream 1447510 9425290 ~ 9434940 (-)
AMCG00005850 NA other upstream 2317819 10295599 ~ 10352782 (-)

Expression


Co-expression Network