AMCG00005718


Basic Information

Item Value
gene id AMCG00005718
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 7896346 ~ 7901372 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005718
ATGTCTCTGGTAAATGTAGTATTCGTTCTCAACCTTTTATGGAGAGAAACCCAGTTCAGTCCTGGCCTGCATCAAGCCTGCTCTCTGGGTGGAGTTGAGAGCTGCTGGCGCTGTGACATCGAGAGCCAGCGCTGCATGCCATCGGAGCCTCCTGCGCTCTGTTTTTCTGTGCCATTGATTTACGCGGGCAGCTTTGCAGCTAATCGTTATTCCACCCCAGCTACAGAGCAGGCTGATAAGACCCCCTTCTCATCAATCCAACACGTTCGCAGGATTATCGTGCCTGGACATCGGCCACAGCTGAAGGAGCTGCTGATGGGGAGGCACGGGGTGACCTACTGTGGTGAGAGCTCGGCCAGCACCCTGACCATGGCCAACGTCCCCTGGCATGAGGAAGTCATCCACTTTGTGCAGCAGCTGACGGACATGCTCCCGGAGTACGAGATCGCCTCCGAGCACGAGCACTCCAACTGCCTCCTGGTCGCCCACACCAAGAAACGCTCTCGTTCTGACCTGAACCGGCTTATCAGCCAATTACCGCGGCACACAGGACGGCAGGCGCCAAGCGGAGAGTGGCAGGGCATTGCCCGATCCCGGCAGCCAGGCAGCGAAGCATGTCGGCACTGGCTGGCCATGTTGCTCAGGCTATCCTGGGACCGTGAGCGCGGGACGGTCTGTGCCATAGCCCGTTTACGAGGCCACGCTGAGCAGACGGCTGCGGACTGGGCGCAGAGAACCCAATGTTCGGCTACCCTTGCTGTGAAGAGGAGTCTCCGGTCCCCACTGCCAGGTTTCAGATCCACGAAACACAAGAGCACAGACGAGATCGTTACCACACAGGTTTTCACAAGTGTCTTCTGCTAG

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0005506 iron ion binding molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0010181 FMN binding molecular_function
GO:0051536 iron-sulfur cluster binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005718 True 864 mRNA 0.58 4 7896346 7901372

Neighbor

gene id symbol gene type direction distance location
AMCG00005692 caln1,LOC108277467,LOC107582596,LOC107554278,LOC107672359 coding downstream 27126 7852666 ~ 7869220 (-)
AMCG00005691 caln1,LOC107716051,LOC107659935,LOC107582596,LOC107672359,LOC107554278,LOC103034584 coding downstream 67794 7821194 ~ 7828552 (-)
AMCG00005698 NA coding downstream 427846 7467691 ~ 7468500 (-)
AMCG00005659 NA coding downstream 603974 7281620 ~ 7292372 (-)
AMCG00005688 cltc,cltcb,LOC108443353,LOC105907438 coding downstream 619866 7243950 ~ 7276480 (-)
AMCG00005715 LOC102799651,LOC107659914,LOC104957508 coding upstream 17307 7918679 ~ 7950134 (-)
AMCG00005716 NA coding upstream 52759 7954131 ~ 7966260 (-)
AMCG00005717 psph coding upstream 74686 7976058 ~ 7977780 (-)
AMCG00005702 phkg1,LOC107677094,LOC107747678 coding upstream 87984 7989356 ~ 7999100 (-)
AMCG00005701 abhd11,LOC107715343 coding upstream 122160 8023532 ~ 8025712 (-)
G153742 NA non-coding downstream 21304 7874787 ~ 7875042 (-)
G153681 NA non-coding downstream 617581 7278504 ~ 7278765 (-)
G153678 vmp1,LOC105021956,LOC107728773 non-coding downstream 694060 7179628 ~ 7202286 (-)
G153638 NA non-coding downstream 842787 7052805 ~ 7053559 (-)
G153586 NA non-coding downstream 960670 6935430 ~ 6935676 (-)
G153778 cct6a non-coding upstream 80658 7982030 ~ 7983931 (-)
G153779 NA non-coding upstream 82868 7984240 ~ 8021640 (-)
G153980 NA non-coding upstream 672820 8574192 ~ 8588222 (-)
G154010 NA non-coding upstream 828431 8729803 ~ 8730149 (-)
G154126 NA non-coding upstream 1085909 8987281 ~ 9024879 (-)
G153733 auts2 other downstream 108025 7785554 ~ 7788321 (-)
AMCG00005685 NA other downstream 750539 7109218 ~ 7145807 (-)
AMCG00005674 NA other downstream 1399775 6490255 ~ 6496571 (-)
AMCG00005628 LOC107090330,LOC102220786 other downstream 1662318 6232159 ~ 6234028 (-)
G153342 NA other downstream 1813480 6081235 ~ 6082866 (-)
AMCG00005704 NA other upstream 97964 7999336 ~ 8001405 (-)
G153806 NA other upstream 190376 8091748 ~ 8124685 (-)
G154142 NA other upstream 1189050 9090422 ~ 9092573 (-)
G154250 NA other upstream 1523918 9425290 ~ 9434940 (-)
AMCG00005850 NA other upstream 2394227 10295599 ~ 10352782 (-)

Expression


Co-expression Network