AMCG00005720


Basic Information

Item Value
gene id AMCG00005720
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 8498502 ~ 8507097 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005720
GTCGCATCTCTCCGGGCCACAGTCAGCGATTTGGACAGCAGAGGGGGCTACAGCCGGGGACCTTTGCCTCTTGTTTTCGGCGACGATTGTCCCCACTGCTGACAGTCACTTGCGTGTCCGAGAGACGAGTAAACGAAATGGCTTcacaggagcaggaggaggtcACGGAGCAGGTGTGTCTGGAGTCCGATCTGCAGGATGGACAGATGAAGGAGGTAGAGGTGGGGAAGCAGAAAGTCCTGCTGGTGCGCAGCGAGGGGACGTACAGTGCGGTGGGCAACCTGTGCACTCACTATGGAGCCCCCCTCAGCAAAGGGGCCCTGTCTGGCAACCGGGTGCGCTGTCCCTGGCACGGCGCCTGCTTCAATGTGAAGTCCGGGGACCTGGAGGAGTTCCCCGGCCTGGACAGTCTGCCCTGTCACAAGGTAAAAATCAAGGACAACAAAGTGTTtgtgacaataaataaaaagACAGTGCAGGTGACCAAGAGAGTGAAAAGGATGGGCTGCCGAGAGACGGGACAGACCCACACCATCCTGCTGCTGGGAGgagGCCCAGCGTCGCTGCTGTGTGCAGAGACCCTGCGTCAGGAGCACTATGGGGGCCGCATCATCATGGTCACCAAGGATGACCTGCTGCCCTATGACAAGACCAAGCTGAGCAAGGTCATGAACGTGGACAGCCAGAACATCCTACTGCGGCAGATTGAGTTCTTCCATCAGTACGACATTGAGGTGTGGATGAGAAAGGAGGCCGTGTCTGTGAACACTGATAAGAAGATGGTCTCTTTCAGCGATGGCTCTGTGCAACATTACAACCAGCTTCTCATTGCCACTGGCTGCAGAGCCCGGACACTGGACTGCCCTGGTGCTGACCTAGACAACGTGAAGGTCCTGCAGACCCCCGATGATGCcgggaaaatccaccaagagGCAGTGGGCAAGGCCGCAGTCATCCTGGGTGCCTCCTTCATAGGTATGGAGGTGGCGTCCTACCTCTCGGACAAGGCTTCCAGTGTGGCAGTGATTGGCAGCAGTGACACCCCCTACAAGAACACCCTGGGGGCAGAGATTGGCAGAGTCACCATGAAGATGTTGCAGGAGAAGAACGTCCATTTCTACATGAACGACGGCGTGGCTGAGATCAAGGGGGAGAACGGCCAGGTCAAAGAAGTGGTGCTGAAGAGTGGGAAGGTCTTGCCCGCAGACGTGTTCGTCATTGGAATAGGTGTCTTGCCCAATTCGGATTTCCTTAAAGGAAGCTCGGTTGAACTGAATTCCAAACAGGCTGTCATTGTAGACAAGTCCATGAAGACCAACGTGCCGGACGTGTTCTGTGCAGGAGACGTGGCGTTCTTCCCTCTCGCCCTGCGGAAGGATGCGAGAGTCAGTATCGGCCACTGGCAGCTCGCACAGGCACAAGGACGGGTTGCTGCCCTGAATATGCTAGGCAAGCCAGTGGAGATCAACTCTGTCCCCTTCTTCTGGACGGTGCTGCTAGGAAAGAGCGTCCGTTACGCAGGCTTTGGCGAAGGGTACACAGAGATTGTCGTGAAGGGCAACGTGGAAGAAATGAAGTTTCTTCTGTTTTATATCAAGGACGGCATGGTTGTGGCAGCAGCCAGCTTGAACTACGACCCCACGGTGTCCCAGGTGGCGGAAAGGCTGGCGTCAGGGAAGAGGATTACTAAAGCACAGGCCGAATCTGCTGACCTGAGCTGGCTGAAGCTCCCCTGACACCGCAGCTCAGTTCAATCGCGTTCAACTGGGAAGACCAGGGAATGTCGCTGCCCTCCTATAAAGAGGCTGcgttttttcttcctttattcTTCCTTTTTCACAACTACCAGACAGATCCTGGATCtctacatttataaatgcttGTGATTGATAGTTGGCTGCTCGATTGGTTTCCCCGTGCTGTCTTTGGCCAGCGAATACAGTTTGGCTGGGTTTAATGGACCCAAGTGTCAAGGCTGTTATAAAAAACATCAGCATGAGATAGAGAGATGAGCTTGTTAGCTGACTGGGTTGCAGGCAGGTAACGAATAAGAATTGCAGAAATGAAATAACTGCGAAGATGCGGGTGATCCGCAGTGTTCCCTTAACCTTGCGCCAAACTACATCCTTGCACAATGCTCAGTTACAACTGGCAACAACATAGCTTGCAGAGAAGAGTCTGGACGAACATAACAACAAGAACCCAATCCAGCAGCCAAGGCCTGTTTTAAAGAGAAATGCTGTGCATCCCTCTCAGTGAGTTTCTTATCTGTTTGCAGTGCGACATAGACTACTTCCTGCACAGTATGGCGGATTGTTTTTCAGACTCTGATTTTTCCACACACCCTGGTCCCCGATTTCAGACGAGACGCACTGCCTGCTTTTTGGCTTGAATTAAGCCTCcgcaaaaaatgttttattcctttgaTTCAAAAGTTATCAGCCAAAATCCATGGCAATGACCTACCATAATGGGCCGGGTCCCAGGCCACATTTCGGCATAACCTTAAAGCATGTTTGACCATTACAGCTGGTGTCATCAAACTGGGGACCCCAGGGGGCAGTGGTAATAATCAGGCAGACTTTAGTGCACTTTCATGTAATACTCTACAGTAGGAGGGAGGGTAATTCCAGTCCTAGAGGACAGCAGcagtttctggttttcattccacctcaggtcttaattaattaatggaagTCTTTATTAGAATAAGAATTTAAATCACACTgttttattccaggtctgaatcAGTTCCAAACTGAAAGGTTCCTTATAAACCCTCCAGGACTGGCATTGCCCTACTGTCTGAATATATTACTTGCTTTGGGatttttgcttttatctttttgttCTCCTCTGTATAGACACTCGCAAGACACGAGTGAGCGAAAAGCTGTCGATGTATTTAACTCCACAAACGTCACTCTGAAAAGTCTTCTGCTTCGTACCACAAACAGACCTCAGGCATAATTCACTTGAAATGCCATTTTAACTGTTCTCTGACAGTCATGTGTAGTCATGTGATGGACTCCGTTATATAGTGTGGCTCTGAACCAACAGGCCCTGGGCATTTCTTTGGCATATACCGTGGTTTGTTACATTTATGTGTTTAGTCAGTGAAAGACAGAACTCACAGCTGCTGAAGACTCCTCAAGTCAGTTAAATGTTTAAGcgctttactttttaaatgcaagtaGATGTTGTGAGGGGTCAGATTTGGGTCTTTGACAACAAATGCAGGTTAATTTGAGAATAAAATCAGGAACTGGGTATGTGTTGCAGCCGTTTGTGTTCCATGTcggttttctttgtttgtaccgactttgaaaataaagtacatcCAGAAGGAA
>TU193852
AGGACGGGTTGCTGCCCTGAATATGCTAGGCAAGCCAGTGGAGATCAACTCTGTCCCCTTCTTCTGGACGGTGCTGCTAGGAAAGAGCGTCCGTTACGCAGGCTTTGGCGAAGGGTACACAGAGATTGTCGTGAAGGGCAACGTGGAAGAAATGAAGTTTCTTCTGTTTTATATCAAGGACGGCATGGTTGTGGCAGCAGCCAGCTTGAACTACGACCCCACGGTGTCCCAGGTGGCGGAAAGGCTGGCGTCAGGGAAGAGGATTACTAAAGCACAGGCCGAATCTGCTGACCTGAGCTGGCTGAAGCTCCCCTGACACCGCAGCTCAGTTCAATCGCGTTCAACTGGGAAGACCAGGGAATGTCGCTGCCCTCCTATAAAGAGGCTGcgttttttcttcctttattcTTCCTTTTTCACAACTACCAGACAGATCCTGGATCtctacatttataaatgcttGTGATTGATAGTTGGCTGCTCGATTGGTTTCCCCGTGCTGTCTTTGGCCAGCGAATACAGTTTGGCTGGGTTTAATGGACCCAAGTGTCAAGGCTGTTATAAAAAACATCAGCATGAGATAGAGAGATGAGCTTGTTAGCTGACTGGGTTGCAGGCAGGTAACGAATAAGAATTGCAGAAATGAAATAACTGCGAAGATGCGGGTGATCCGCAGTGTTCCCTTAACCTTGCGCCAAACTACATCCTTGCACAATGCTCAGTTACAACTGGCAACAACATAGCTTGCAGAGAAGAGTCTGGACGAACATAACAACAAGAACCCAATCCAGCAGCCAAGGCCTGTTTTAAAGAGAAATGCTGTGCATCCCTCTCAGTGAGTTTCTTATCTGTTTGCAGTGCGACATAGACTACTTCCTGCACAGTATGGCGGATTGTTTTTCAGACTCTGATTTTTCCACACACCCTGGTCCCCGATTTCAGACGAGACGCACTGCCTGCTTTTTGGCTTGAATTAAGCCTCcgcaaaaaatgttttattcctttgaTTCAAAAGTTATCAGCCAAAATCCATGGCAATGACCTACCATAATGGGCCGGGTCCCAGGCCACATTTCGGCATAACCTTAAAGCATGTTTGACCATTACAGCTGGTGTCATCAAACTGGGGACCCCAGGGGGCAGTGGTAATAATCAGGCAGACTTTAGTGCACTTTCATGTAATACTCTACAGTAGGAGGGAGGGTAATTCCAGTCCTAGAGGACAGCAGcagtttctggttttcattccacctcaggtcttaattaattaatggaagTCTTTATTAGAATAAGAATTTAAATCACACTgttttattccaggtctgaatcAGTTCCAAACTGAAAGGTTCCTTATAAACCCTCCAGGACTGGCATTGCCCTACTGTCTGAATATATTACTTGCTTTGGGatttttgcttttatctttttgttCTCCTCTGTATAGACACTCGCAAGACACGAGTGAGCGAAAAGCTGTCGATGTATTTAACTCCACAAACGTCACTCTGAAAAGTCTTCTGCTTCGTACCACAAACAGACCTCAGGCATAATTCACTTGAAATGCCATTTTAACTGTTCTCTGACAGTCATGTGTAGTCATGTGATGGACTCCGTTATATAGTGTGGCTCTGAACCAACAGGCCCTGGGCATTTCTTTGGCATATACCGTGGTTTGTTACATTTATGTGTTTAGTCAGTGAAAGACAGAACTCACAGCTGCTGAAGACTCCTCAAGTCAGTTAAATGTTTAAGcgctttactttttaaatgcaagtaGATGTTGTGAGGGGTCAGATTTGGGTCTTTGACAACAAATGCAGGTTAATTTGAGAATAAAATCAGGAACTGGGTATGTGTTGCAGCCGTTTGTGTTCCATGTcggttttctttgtttgtaccgactttgaa

Function

GO: NA

KEGG:

id description
K22747 AIFM3; apoptosis-inducing factor 3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005720 True 3350 mRNA 0.50 19 8498502 8507097
TU193852 False 1908 TUCP 0.45 4 8504195 8507075

Neighbor

gene id symbol gene type direction distance location
AMCG00005705 LOC108424102,LOC106612835,LOC101169222 coding upstream 157143 8327061 ~ 8341359 (+)
AMCG00005707 NA coding upstream 223158 8247708 ~ 8275344 (+)
AMCG00005708 NA coding upstream 267912 8216790 ~ 8230590 (+)
AMCG00005709 NA coding upstream 281852 8201620 ~ 8216650 (+)
AMCG00005731 NA coding upstream 396595 8101296 ~ 8101907 (+)
AMCG00005721 vps53 coding downstream 948 8508045 ~ 8523947 (+)
AMCG00005719 NA coding downstream 44008 8551105 ~ 8558820 (+)
AMCG00005736 NA coding downstream 92663 8599760 ~ 8602730 (+)
AMCG00005737 NA coding downstream 108268 8615365 ~ 8615952 (+)
AMCG00005735 NA coding downstream 154710 8661807 ~ 8667423 (+)
G153859 NA non-coding upstream 146753 8345678 ~ 8351749 (+)
G153816 NA non-coding upstream 220428 8251301 ~ 8278074 (+)
G153747 NA non-coding upstream 610722 7887566 ~ 7887780 (+)
G153702 NA non-coding upstream 1137185 7360384 ~ 7361317 (+)
G153689 NA non-coding upstream 1199990 7298154 ~ 7298512 (+)
G153955 NA non-coding downstream 222706 8729803 ~ 8730155 (+)
G154025 NA non-coding downstream 274892 8781989 ~ 8805304 (+)
G154030 NA non-coding downstream 286730 8793827 ~ 8796424 (+)
G154091 NA non-coding downstream 514853 9021950 ~ 9071747 (+)
G154143 NA non-coding downstream 586812 9093909 ~ 9094670 (+)
G153815 NA other upstream 267912 8213904 ~ 8230590 (+)
AMCG00005660 LOC106603524 other upstream 710631 7749183 ~ 7787871 (+)
AMCG00005694 NA other upstream 1163931 7307058 ~ 7334571 (+)
G153675 NA other upstream 1232531 7260677 ~ 7265971 (+)
AMCG00005663 NA other upstream 1836022 6608643 ~ 6662480 (+)
AMCG00005787 NA other downstream 321481 8828578 ~ 8854100 (+)
G154251 NA other downstream 928803 9435900 ~ 9438269 (+)
G154283 NA other downstream 1080705 9587802 ~ 9589798 (+)
G154330 NA other downstream 1374285 9881382 ~ 9883955 (+)
AMCG00005802 NA other downstream 1558063 10065160 ~ 10089769 (+)

Expression


Co-expression Network