AMCG00005749 (ncbp3)


Basic Information

Item Value
gene id AMCG00005749
gene name ncbp3
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 9083152 ~ 9092563 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005749
GGCGGAGGGAAGATGGCGGCTGTTCGGAGCTTGCAGGTGTCAGTGAAGCCAGATGCCGGCTCAGATCACTCAGAATCGGACTCCGAATCCGACTCGGACCGGGACCCACGGGAACCGGAGCCTATGGAGGTAGAAGAAGGCGAACTGGATCTGGAGTCCATCCCAGTCCGCCGGTCTCTGAAAGAGCTGCTGCCAGACACCAGCCGCCGGTATGAAAACAAAGCTGGGACATTCATCACGGGGATCGATGTCACTTCTAAGGAAGCCGTGGAGAAGAAGGAGCAGAGAGCACGGCGCTTCCACTTCCGAGCCGAGGTGAACCTGGCCCAGAGGAATGTGGTTCTGGAGCGGAAGATCCTGAAAGAAGCTATCCCCAGAGTGCGCCTGGAGGCCCTCTACATGAGTGGTGTTGATGAGATGAGCACGCAGGAAGTTTTCGGCTACTTCAAGGAGTACCCCCCGGCCCACATTGAGTGGATAGACGACACCTCCTGTAACGTGGTGTGGCTGGATGACAACACCTCGACCCGCGCCCTCATCAACATCAGCCGCATGCCTGACCAGGAACCAGTCGACGACAAGGCCGGCCCAGAGCAGGCCCCCCCAGCGCGCCGCAGTAgagACCGCCGGGAGCAGGACTCggacgaggaagaggaggaggaggcggaggagggggaggtggaagaagaggaagacgCAGAGGACAAGAGCAGTGTGCAGAGCGAGGGGAAGCCCAGTGACGGCGAGGAAGACTCTGAAAAGAAGCCAGAGCCGGAGAAGACAGAGACTGACGTGCTGTCCGACGCCGAGAAAGAGTCCCTCCTCCGCAACGACCTCCGGCCTGCCACCAAGCCTTTCAAGGGCAACAAGCTCTTCATGAGGTTTGCCACACATGATGACAAGAAGGAGCTGGGGGCGGCCCGGCGGAGTCGGTACTACATGAAGTACGGGAATCCCAACTATGGAGGCATGAAAGGCATCCTCAGCAACTCCTGGAAGCGCCGGTTCCACTCCCGCAGGATCCAGAGGGACGTCCTGAAGACCAAGAAGAGCCTGATTGACCTGGTGAACCTGCCAGAGGAGCCCatcgaggaagaggaggaggaggaggaggagggagaggagttGGATGGAGACGAGGACATGGACGAGGACGAACGAGTGGTGGAGTAccgggaggagagggagagggagatggaccGGGAGAGGGTGGCGCGTAGCTCCGCCGTCAGCCTGTGCCGGCCCAGCTCCGGGTCCTCGGCCTCGGACTCGGACGAGATGGACTATGACCTGGAGCTCAAGATGATCTCCACCCCCTCGCCCAAGAAGAGCATGAAGATGACCATGTACGCCGACGAGGTGGAGTCCAAGCTCAAGACCATACGgcACTCCATGCACTCTGACGGGGTCTCCAGCAGCAACATCAAGGCCCGCATCGGGTCGGGAAGCAAAGCGGCCGCTGAGAAAAGGCCACACTCCCCCGAGGCCAGGCCGAGCAAGGCGACGGTCAGCGCGCACCCCCCTACACGCAGGGAGCCCCTCACTGACGTGCACAGCCGGCTGGGGACCCCCAAACAGGACTCCCGGAGCCTCTTCTCCGAAAGCAGCAAGGACAAAAAGCCAGTGAGCAGTCTGTGGAGCAGGCTCGGCTCCAGCCAGAAGGACAAGGTGCCGGTGAAGAGGTCGCCGGCTGGGACGACGGCGCCGGGCAGCGCGGCGGCAGCCAGGGGGGATAGCGCGGGCTCGGGAGCCGAGGAGGAGGACACGGAGCTGCAGAGGGTGTGGGGCGCCATGAtcaaggagaaggagaagaccCACCAGAAGAAGAGCCGCCTGGACAACCTGCCCTCGCTGCAGATCGAGATCAGTAGAGACAGCAGCAACGGCTCTGACAGCgactcctgagagagagagagagagagagagagagacggggcaGACGGAGGACTCGCTCCTCTATCCCCTCTCCAGGCCCCGCCGCCGCCCGCTCCCTCCCACACCCTCGCTCTGGGGCACAGACTCTCAACCACCGCGGCACAAACCTTACCCATTCCTACGCGAGCCCTCCGTGACTTCTCCGATCATCCGATACAAACTCCCTGGAGCACCGAGAGAGACTTTAAGACTGCGCCAAACATCCAGCATAACTTCTTGTGCTTTCCCTGCATCCCTCCAACTCCGTGGGGCTGTGCAGCTCGGGTGCCCGATCCCTAATTGGATCATAAGTGTACACATCTCAAGCGGAAGACCCTTAACTCAGTGTTTGTCGGTTTCTTGGTTCCCattctgttcttgttttgttttgcagtacGATGGCATCCTCTTGTTTTGCAGTGTCTCTATTTGTTCACCCGACAGCCTCGCCTGTCCTGCAGCCCCTGTCCCTCGTTCTGAAGCGAACCTTGCTCACCGGTCCGGACCCACGAGAAAGACCGGAGGTCGCCCCCGTCGCACCACCCTGGAGACTAGAACTGCTGGCCTCTTCGATCTTTGGACTTCTGTATTAAAACACTGCACCACGCAAATGTCAGTGAAGTTGTATACAAGACTAAATTAAAGACCTTCCAACGTTGACCCATTATGTTTTTGTACCAGAAATACACTCCCTCGAGAGGTCCCTTTTTCCAGAGGTTGAATTTGCGAGGTATTTAAAGAATGGGTGTtcagatatacacacaaaaacacgcacacgcagacACTGCCCTCTGTCTTGGGTCTGGCCTTTGTACGGCTTCTTTCGAAAGGCAGGAGGCAAGTggagagaacagaaaaaaatacttttaattgcTGGTTAACAGAACATGCCTGTCATATTTCCTTGCCTTCTCTCTTGGTTCAAATACTGTGTCTTGTTTTCAGCATAAAATAAcctcttattattgttattgttattatctgAGTCTTGTATCTTTCTTGTCTCTTGTGAAGACGCTCTGTAGGCGGCTGTGGTCTCGTAGTTCCCTCTCTGCATCTGTGTAATGCCATGGTGGTGTTCGTCATCTTACAGGACTGGAATAAGGATCTGATGCAAATAAGTTTGTTTTATCAGATTGAGTTTGGGTATCTATATTATCTTCCCTGCATTCATGTCTCATTTTGTATTGGTTGAATGTGCATTACTTTGTTTGGTATGTCTCGGCAATTGATTAATGTGCTCAAGTTAAGagacgtttttattttattttattatgaatccTTTATGAAAAGAACTTACTTTCCAGTGTTATTCCATTACTTCAAAATCATGTCGGCAGGCTTTTATTCCAGCTAGTATGGCAAAACTACTATCGTTGCCAGTTACAAAAGGTGCTAAAGTTCATCCACAGATGTAGCAGATGAAGCTTATCCTCTCAATCCAAACtatacaacacaaataaaaggtactttattttataaggGTATGCACTACTTTTGTTAATGTTATATCTTTTGTCACTCTGAAAAGATTAACCATGTGGGAAAGGAACCCAAATCTATCACTTCAGCTACTACAAGCAGTTAAGGTTTGTGGTTTGACATGCAGGTTGAACACTCACTTTGAATCAACCAGCCAGGatttacaataaaaagtaaattgatCATATAAGTTGCTCCTATTGGCAGTTCTCGTGTCTTGACTTGTGAGAGTTCACcgtttccattttgtttttaaaaagcaatcgGATCAGATAAATAGTTGGCGAGACTGCCAATTAAGTTCATTACTCTTTTAAAATGGAGTCATCTGTTTTGGTTTGAAGAACACTTGTAAGGAATTCcgttg

Function

symbol description
ncbp3 Predicted to enable RNA 7-methylguanosine cap binding activity and mRNA binding activity. Predicted to act upstream of or within 7-methylguanosine mRNA capping and mRNA transport. Predicted to be located in cytoplasm. Predicted to be active in nucleus. Orthologous to human NCBP3 (nuclear cap binding subunit 3).

NR:

description
nuclear cap-binding protein subunit 3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005749 True 3763 mRNA 0.53 13 9083152 9092563

Neighbor

gene id symbol gene type direction distance location
AMCG00005745 NA coding upstream 44090 9035288 ~ 9039062 (+)
AMCG00005746 NA coding upstream 66414 9010184 ~ 9016738 (+)
AMCG00005742 NA coding upstream 179068 8897277 ~ 8904084 (+)
AMCG00005788 NA coding upstream 199351 8876410 ~ 8883801 (+)
AMCG00005789 NA coding upstream 210027 8869909 ~ 8873125 (+)
AMCG00005751 blmh coding downstream 22908 9115471 ~ 9128845 (+)
AMCG00005752 NA coding downstream 38474 9131037 ~ 9139661 (+)
AMCG00005753 NA coding downstream 66668 9159231 ~ 9164216 (+)
AMCG00005750 NA coding downstream 72470 9165033 ~ 9180805 (+)
AMCG00005774 ssh2 coding downstream 148071 9240634 ~ 9251830 (+)
G154091 NA non-coding upstream 11405 9021950 ~ 9071747 (+)
G154025 NA non-coding upstream 277848 8781989 ~ 8805304 (+)
G154030 NA non-coding upstream 286728 8793827 ~ 8796424 (+)
G153955 NA non-coding upstream 352997 8729803 ~ 8730155 (+)
G153859 NA non-coding upstream 731403 8345678 ~ 8351749 (+)
G154143 NA non-coding downstream 1346 9093909 ~ 9094670 (+)
G154147 NA non-coding downstream 7866 9100429 ~ 9108370 (+)
G154175 NA non-coding downstream 99733 9192296 ~ 9194187 (+)
G154252 NA non-coding downstream 347930 9440493 ~ 9441381 (+)
G154343 NA non-coding downstream 813209 9905772 ~ 9944143 (+)
AMCG00005787 NA other upstream 229052 8828578 ~ 8854100 (+)
AMCG00005720 NA other upstream 576055 8498502 ~ 8507097 (+)
G153815 NA other upstream 852562 8213904 ~ 8230590 (+)
AMCG00005660 LOC106603524 other upstream 1295281 7749183 ~ 7787871 (+)
AMCG00005694 NA other upstream 1748581 7307058 ~ 7334571 (+)
G154251 NA other downstream 343337 9435900 ~ 9438269 (+)
G154283 NA other downstream 495239 9587802 ~ 9589798 (+)
G154330 NA other downstream 788819 9881382 ~ 9883955 (+)
AMCG00005802 NA other downstream 972597 10065160 ~ 10089769 (+)
AMCG00005929 NA other downstream 1174710 10267273 ~ 10356244 (+)

Expression


Co-expression Network