AMCG00005758 (cryba1a,LOC103042223,LOC107743738,LOC107669750,LOC105898204,LOC103145583)


Basic Information

Item Value
gene id AMCG00005758
gene name cryba1a,LOC103042223,LOC107743738,LOC107669750,LOC105898204,LOC103145583
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 8688554 ~ 8691731 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005758
tgtgtgtgtgtgtagtgactGCAGACGAGGGGGGCTCCAGGACGGGCGTGCTGGTGGCCGTCATTGTGATTGGGGAGATAAAGCCCTCGGCTCAGCCCTGGACAATGAGCTCCCCTGCAATGTGCTGACTCCAGCCCAGCGTGCCGCTTGCCGCCCCATTCACAGGGGACGTGTATAAATACCCCTGCTCACGCCGAGTCAGGGGACAGATTTGTGGAACCCCTCACCGCACACAGCTATTTTTTGGGTCACCTAAAACTGAAATACCGGACAGAATGGCACAGACAAATCCCATGCCGATGGGGCCATGGAAGATCACGGTCTACGATCAGGAGTGTTTCCAGGGGAAGCGCATGGAGTTCACCGCCTCCTGCCAGAACATCATGGAGTGCGGCTTCGACAACATCCGCTCCCTGAAGGTGGAGTGCGGAGCctgGGTGGGCTACGAGCACTCCAGCTTCTGTGGGCAGCAGTTCATCCTGGAGAGGGGAGAGTACCCCCACTGGGAAGCCTGGAGCGGCAGCAACGCCTACCACATCGAGAGGATGATGTCCTTCCGTCCTGTCTGCTCTGCGAACCACAAGGAGTCCAAAATGACCGTGTTTGAGCGCGAGAACTTCATCGGGCGCCAGTGGGAGCTGTGCGATGACTACCCCTCCCTACAGGCCATGGGCTGGTGCAACAACGAGATCGGGTCCATGCAGATCCAGAGCGGAGCCTGGGTGTGCTACCAGTACCCTGGATACCGTGGTTACCAGTACATCATGGAATGTGACCACCATGGAGGGGAGTACAAACACTGGAGGGAGTGGGGGTCCCACGCTCAGACTTTCCAGGTGCAGTCCATCCGCAGGGTCCAGCAGTGAGCGCCTGCCCCTtcatccccccaccccaggcCCCTGAAGAAGGAAAAGGAACGACGGCGAGGACTGACCACCTGCTTGGTGCGCaatgacagagaaaaataaacactttaaagaAACCCTTGTTTACAGCACGTTGTCCCACCCAAACTAAAACCCGAAGTCTGTATTGTTCAGACCCCGCTCGGACTTTGCTCCTCATCATTGTCGTGGTTTCATCTGTACGAGAATGATCAAtaaagagaatgagag

Function

symbol description
cryba1a Predicted to be a structural constituent of eye lens. Predicted to be involved in lens development in camera-type eye and visual perception. Is expressed in lens. Human ortholog(s) of this gene implicated in cataract and cataract 10 multiple types. Orthologous to human CRYBA1 (crystallin beta A1).

NR:

description
beta-crystallin A1

GO: NA

KEGG:

id description
K23482 CRYB; beta-crystallin

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005758 True 1115 mRNA 0.57 6 8688554 8691731

Neighbor

gene id symbol gene type direction distance location
AMCG00005740 NA coding downstream 27375 8645588 ~ 8661179 (-)
AMCG00005741 gosr1 coding downstream 46864 8637800 ~ 8641690 (-)
AMCG00005739 NA coding downstream 80496 8606283 ~ 8608058 (-)
AMCG00005722 NA coding downstream 158692 8528521 ~ 8529862 (-)
AMCG00005725 LOC106939373,LOC106581044,LOC102781004 coding downstream 210268 8476286 ~ 8478286 (-)
AMCG00005761 NA coding upstream 30122 8721853 ~ 8728092 (-)
AMCG00005759 NA coding upstream 50581 8742312 ~ 8752368 (-)
AMCG00005762 NA coding upstream 72176 8763907 ~ 8764149 (-)
AMCG00005760 NA coding upstream 72780 8764511 ~ 8770868 (-)
AMCG00005795 NA coding upstream 85125 8776856 ~ 8786521 (-)
G153980 NA non-coding downstream 100332 8574192 ~ 8588222 (-)
G153779 NA non-coding downstream 666914 7984240 ~ 8021640 (-)
G153778 cct6a non-coding downstream 704623 7982030 ~ 7983931 (-)
G153742 NA non-coding downstream 813512 7874787 ~ 7875042 (-)
G153681 NA non-coding downstream 1409789 7278504 ~ 7278765 (-)
G154010 NA non-coding upstream 38072 8729803 ~ 8730149 (-)
G154126 NA non-coding upstream 295550 8987281 ~ 9024879 (-)
G154150 NA non-coding upstream 403940 9095671 ~ 9108363 (-)
G154157 blmh,LOC106612652 non-coding upstream 437039 9128770 ~ 9139826 (-)
G154234 git1 non-coding upstream 633791 9325522 ~ 9330533 (-)
G153806 NA other downstream 563869 8091748 ~ 8124685 (-)
AMCG00005704 NA other downstream 687149 7999336 ~ 8001405 (-)
G153733 auts2 other downstream 900233 7785554 ~ 7788321 (-)
AMCG00005685 NA other downstream 1542747 7109218 ~ 7145807 (-)
AMCG00005674 NA other downstream 2191983 6490255 ~ 6496571 (-)
G154142 NA other upstream 398691 9090422 ~ 9092573 (-)
G154250 NA other upstream 733559 9425290 ~ 9434940 (-)
AMCG00005850 NA other upstream 1603868 10295599 ~ 10352782 (-)
AMCG00005862 NA other upstream 1851803 10543534 ~ 10551355 (-)
AMCG00005839 LOC103367321,LOC107729686,LOC103398303 other upstream 2046813 10738544 ~ 10752114 (-)

Expression


Co-expression Network