AMCG00005763


Basic Information

Item Value
gene id AMCG00005763
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 9425307 ~ 9427544 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005763
ATGCTGGATGTCATGGAGGTCCCGAGTCACGCTAGGCATCTGCTCCTGCAGCTCAACTCGCAGCGGACTAAAGGCTTCCTGTGTGATGTCATCATCGTAGTGCAGAATGCCCTGTTCCGGGCACACAAGAACATCCTTGCGGCCAGCAGCCTTTACCTGAAGTCTCTGGTCGTCCACGACAACCTCATTAACCTGGACCACGAGATGGTGAGCCCAGGCATATTCCGCATCATCCTGGACTACATCTACACCGGCCGGCTGAGCGAGGGCGACCCGGCCTCTGAGCAGAACCTGGGCGCCGTGCTGGCAGCTGCTAGCTACCTGCAGCTGCTGGACCTGGTGGCTCTGTGCAAGAAGAAGCTGAAGCGCAATGGGAAGTACAGCCACATCCGGACCACCAGCTACTCGCCCTACACCAAGATTGGCCAGCCAGGCGTCAGTGGGCGCTTCCGGGTCTCCACCCCTGTCATCCAGTCCTGTTTCGGCGGGGGGGTTGTCAGCCACCCGCCCCGACCCCCCTTGGAGATCTCGCCCATGGACCCCGTGCTGCCCCATCCTATGGACACTCGCACTGGGGAGCTGTACCCCCCCCCCTCTCAGGGCAGTCATATCTACCCCTCCCTGCAGCCGCCCTCAGCCCTCTCTGGCCACCGCCCCTCGGAGCGGGACTGCTCGCCTCTCTATGGACTGGACCTGTCCAAAAAGAGCCCCAGCTCTCAGTCACAGGCCCCATcgcaccacccccacccccactcccaccTGCACCCAGACGGGGCCCTGCACGAGAGCCGGGGGGACGCTGCGCAACTTGGTGGGGGGCGTGAGAGCCCCGCTCTGTCGGGCACTAACGGTGGCTCGTACCCAGGCAGGGAATCCAACTTTGAAGAGTCCCACGTGCCCCTTCCTCAGCTGGCACACAGCCACCCCCACTTAAACCAGCACTTAAACCCACATCCCCCACTACACCCATCCGCCAACCTCCAGGACACTTTCCCTTGCCCCCCGAGCCCAGGCTCTGACCCCCAAGGGGAGATGGCAGAGAGGACGCAGGAGCCCAGTGGGGGGGGCACAGTCTACCACTGGATGAAGAAAGAGCATCTGCCCTATCCAGGAGAGGATGACGAGGAGGAGGGTGACGAGGAGgaaggtgggggaggggggggcagggaaCGGGGGAAAGAGCCTCACAATGGTAAACTCGGAGAGGACAAGCTGTTGCCCCCCCAGGGCGGTGGGGGGTACCCCATGAGCTGCGATGGTGAGGACGACAAAAGCGGGACGAGTGAGGAGACGGGCAGCAGTGAGGGCTGCTCTCCCATCGGCGCCCGCAGGAGGTTCAGCCTGGGGTACGATCCCGAGAGCTTCGGGGACAACCTGTACGTGTGCGTCCCCTGTGACAAGGGCTTCCCCAGCTCGGAGCAGCTCAATGCCCACGTGGAGGCCCACACGGAGGAGGAGGTGTGGTCACTAAccaataacagcaacaacacccACAACAACATCAGCGGTGATGGCGGTGGCAATAACGTCATCAGCAGCCTCTCCAGTATGGACAGCAAGACCAGCCAGAGCCTGGTGGGGGTTGGCGAGATCATCCGACCCTACCGCTGCGCCTCCTGCGAGAAGTCCTACAAGGACCCGGCCACGCTGCGGCAGCATGAGAAGACGCACTGGCTGACCCGGCCGTACCCCTGCAGCATCTGTGGCAAGAAGTTCACGCAGCGCGGCACCATGACCCGCCACATGCGCAGCCACCTGGGGCTCAAGCCGTTCGCCTGCGACGCCTGTGGCATGCGCTTCACGCGGCAGTACCGGCTCACGGAGCACATGCGCATCCACTCGGGGGAGAAGCCCTACGAGTGCCAGGTGTGTGGCGGCAAGTTCGCCCAGCAGCGGAACCTCATCAGCCACATGAAGATGCACAGCGCCGGGACGCCCGCAGGGGTCACGCCTGACGGCAAGCTCAAGATCGACTTCACCGCTGAGGGGATCTACCCACTCAGCAAGTACGCGGCCGAGCACCTGGGGCTGAAGCAGGAGAAAGCCTCAGAGCTCCTGGCCCAGGCCTCGCAGCACCTGCTGGCCGATGCCAAGGCCATGGAAAGCCTGTATCCACTGTCCAAGCTGGCCGCTGAGCACCTGGGCCTGATGCACGACAAGATGGAGGTGCTGAGCCAGTCGCCTGCCCAGCACCAGTCTGCAGAGCCCCGCTCCATCGAGCGCTACTCCCCCAGCTAG

Function

GO:

id name namespace
GO:0005488 binding molecular_function

KEGG:

id description
K24384 HIC; hypermethylated in cancer protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005763 True 2238 mRNA 0.64 1 9425307 9427544

Neighbor

gene id symbol gene type direction distance location
AMCG00005764 NA coding upstream 18434 9397125 ~ 9406873 (+)
AMCG00005783 NA coding upstream 75886 9346443 ~ 9349421 (+)
AMCG00005784 NA coding upstream 94717 9299585 ~ 9330590 (+)
AMCG00005775 NA coding upstream 156071 9252354 ~ 9269236 (+)
AMCG00005774 ssh2 coding upstream 173477 9240634 ~ 9251830 (+)
AMCG00005767 LOC103370200 coding downstream 371453 9798997 ~ 9808730 (+)
AMCG00005768 NA coding downstream 433375 9860919 ~ 9868588 (+)
AMCG00005808 slc13a5,LOC106612936,LOC106581085 coding downstream 480302 9907846 ~ 9921070 (+)
AMCG00005807 med31,LOC107699947,LOC107599285,LOC107684212 coding downstream 513918 9941462 ~ 9943324 (+)
AMCG00005806 NA coding downstream 519208 9946752 ~ 9968147 (+)
G154175 NA non-coding upstream 231120 9192296 ~ 9194187 (+)
G154147 NA non-coding upstream 316937 9100429 ~ 9108370 (+)
G154143 NA non-coding upstream 330637 9093909 ~ 9094670 (+)
G154091 NA non-coding upstream 353560 9021950 ~ 9071747 (+)
G154030 NA non-coding upstream 628883 8793827 ~ 8796424 (+)
G154252 NA non-coding downstream 12949 9440493 ~ 9441381 (+)
G154343 NA non-coding downstream 478228 9905772 ~ 9944143 (+)
G154388 NA non-coding downstream 650763 10078307 ~ 10079436 (+)
G154447 NA non-coding downstream 857970 10285514 ~ 10332094 (+)
G154451 NA non-coding downstream 875413 10302957 ~ 10303497 (+)
AMCG00005787 NA other upstream 571207 8828578 ~ 8854100 (+)
AMCG00005720 NA other upstream 918210 8498502 ~ 8507097 (+)
G153815 NA other upstream 1194717 8213904 ~ 8230590 (+)
AMCG00005660 LOC106603524 other upstream 1637436 7749183 ~ 7787871 (+)
AMCG00005694 NA other upstream 2090736 7307058 ~ 7334571 (+)
G154251 NA other downstream 8356 9435900 ~ 9438269 (+)
G154283 NA other downstream 160258 9587802 ~ 9589798 (+)
G154330 NA other downstream 453838 9881382 ~ 9883955 (+)
AMCG00005802 NA other downstream 637616 10065160 ~ 10089769 (+)
AMCG00005929 NA other downstream 839729 10267273 ~ 10356244 (+)

Expression


Co-expression Network