AMCG00005764


Basic Information

Item Value
gene id AMCG00005764
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 9397125 ~ 9406873 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005764
GCGTTGAAGATGGCGGCTGGAGGTGAGCAGCAGCAGGCTCACAGAGCCGGggtttacaaacagaaaaacaagcaacacaAACACGGAAAGCACCGGACTAAGGGCGAACTGGAACGGGACAACAAGGGCCGTGTGGAAGTGAAAGCTCTCAGTAAGAAGCAGAGGAAGGAGTTGAGAAGGCTGGACCGCCGACACAAGGCCAGTCAGCTCCGCCAGAACAAGAAGGACTCGGTCCTGTCAGAGAAGCGCAAGCTAGGCAGTAAGGATGGCCCTCCTCACTTGGTTGCCATCATCCCACTGCATGCTGGGATTGATGCACAGGGCGCCATGAAGCTGCTGCAGAGCGATGAGACGGGAGTGGTGTGCGAGGGCGTGGCGGGGGGCACCAGCTTCGGGGTCCTCCTGCCCCGCTTCAAACAGAGATTCATCTTCCTCAGGCCAGACCCAGCTGACCTGCATGCTCTCCTGGACATTGCCAAAGTAGTGGACACCCTGCTCTTTCTGCTGGACCCGGTGGAGGGCTGGGACAGCTATGGAGAGTACTGCCTATCCTGCTTGTTTGCACAGGGCCTGCCCAGCTATGCGCTGGTGTGCCAGGGTTTGTTGGAGATGCCGCCGAAGAGACGGACAGAGGCGCGGCGGGCACTGGGCCGGGTCACAGAGCCACGCTTCCCCGAGGGCCGTGTCTTCGGCCTGGACTCGGCGCCGGAGGCCATGCTGCTGCTGAGACACCTGGGCGCACAGAAGCAGCGGCGCCTGGCCTTCCGCTCTCGCCGCCCTTATCTGCTGGCCCAGCACGCCCAGTTCCAGCCAGGGCCGGGTGGGCCTGGGGGGCTGGGCACTCTGAAGGTGTCGGGCTATGTGCGGGGGCGGCCGCTCAGCGTCAACAGGCTGGTGCACATCTCCGGCATTGGTGACTTCCAGCTGAGCCAGATCGACGCCCCGCCGGACCCCCTGCCCTTCACCCCCCGCGAGCGTCGGCCAGGCAAGGGCGGTGATGATGGGGGTGCTGTCGGTGAGGAAGACGTGAAGGTGCTGATGAGAGTGGACCCCGGGCGGCAGGAGAGCCTGCAGGCAGAGGCGGAGCTTGACCCCATGGATGGAGAGCAGACCTGGCCGACTGAGAGCGAGCTGCAAGAGGCCGAAGAGAGGCAGAAGAGGGTGAGGAAGGTGCCCAAGGGAACGTCGGACTACCAAGCCTCCTGGATCTTGGAGGTAAacgagggagaggaggaggagcaggagagcagcgatgaggaggaggaagacgaaGACATGGAGGAGCTGGAAGAGGAGATAGACGATGAGGATGCGGACTCTCAGGACTGGGAGCGCAGCCTGGAGGAGGGCTCCAACTCGGAGACAGAGACGGTGGATCTGGACCGGGACGGACCGGAGCAGCGTTACGATGACAAGATGGACCAGCAGGAGGAGAGTGAGGCCCTGCGGCGCTACAGGGAGGCCCGCGCTGACCAGATGTTCCCTGACGAGGTGGACACCCCGCTAGACATCCCTGCCAGGACCAGGTTCCAGCGGTATCGCGGCCTTAAGAGTTTCCGCTCATCGCCCTGGGACGCCCTGGAGAACCTGCCTGCCGACTACGCCCGCATCTTCCAGTTCCAGGACTTTGAGCGCACGCGCAGACGCGTCTTTGCACAGGTggccgaggaggaggagggcgcCATGGTGGGCTGGTATGTGACCCTTCACGTCCAGGATGTGCCGGCCTCAGTGATGGACAGTTACCAGAGTGGACGCCCTCTGGTCCTCGTCTCGCTGCTGCCACATGAACAGAAGCCAATCAAATCGAAGGAGGAGCTGGTGTTCCAGTGTGGGTTCCGGCGGTTCCGGGCCTCGCCCATCTTCTCCCAGCACACCTCAGGAGACAAGCACAAACTGGAGCGCTTCCTGAAAGCCGACGCCCCCATGGTGGTGTCTGTCTATGCCCCCATCACCTTCCCCACCGCTGGAGTGCTGGTGTTCAAGCAGAGAGAGAATGGAATGCAGGACCTGATCGCCACAGGCTCCCTGCTGAAGGCTGACCCGCAGCGCGTGATGGTGAAGAGGACCGTGCTCAGTGGGCACCCTCTCAAAATCCTACGCAGGACGGCTGTGGTGCGCTATATGTTCTTCAACAGGGaggACGTCCTGTGGTTCAAACCTGTGGAGCTGCGCACTAAGTGGGGTCGGCGGGGCCACATCAAGGAGGCTCTGGGAACTCACGGCCACATGAAGTGCGTGTTCGACAAGCAGCTGCCCTCCCAGGACACCGTGCTCATGACCCTGTACAAACGCATCTTCCCACGCTGGACTTACGACCCCCACGTGCCCCAGCCGCTGCCCTGGGTCAAGGACGAGGTCACCATCGACACCGAGGACATCGACATGGAatagaaagagacagagactgaGATTGAGTTGCCACGCTGTGCTGCCCTCTACAGTTTGGAGGATGGATCTGCAGGAAGGCTGGGATTTCCTCTCCTATTGCCTTTtcgaggtgttttttttttttattttcagtccaGTGGGCACCCACAGCTCTTGCTGTGAGTCACAACCGAGGCGGGATAGAAGTGTGTTTGGGTCGGGATGGTAGAACTCGGACCCAAACCACCGATGTCTGAATAGTTAAATTATACACAATTGCTCTCTCATCCCTGGTCTGCACATCTGTGATCAAGTGCTATCAGGTTTTTAACTCCTACTATTCCTGCTTAAAACATTTGCTTGAATTCTAGAGAGACTTAAGTCAACCCAACAATATTATCCTGCTGTTCTAAGATCATATTTAATCTGGTTTTCCTTTGACTTGACTTAAGTTAGAAGTGAGAGTGCTGTTGCTCTGCGTGGATCGGTCTTTATTAAAAGATTCCCAATGCCAGTCCACTTAACTATCAGTTATGTTGTCCTTTACTGTCTTTATATGATATGACATggggaaattaaagaaaagctgTCAGAATGCCACACTAAACTAAACCTACACAACAAACGCAAAGGCAGGGCTTTGACTTCAGTGAGTAGGACCATGGTAGAGCTGGTGAGTTTTCACTTCCTTGGTCTTCCACTAGATGGCAGTCATGCATCAGGCCACGCTGTCTGTTGCCCCATATCAATTAGCTGTTGTAGGCCTCCCATCTATGGCAGGAAATGTTACAAAACCTCACTGTAAAAAGTGCAGTTCAAAGCCAAGGTGTTTGAATAATCAGATCAGAAACTAATGGTGGCAACATCTGGCTGGGGGGTGGGAGTCTCCTATTTCAgtttctgaaatgtgttcaggGTCTTTTTCACTGGAGAGGTCAGTCGTGTAGGTTGACTGGTTGACCAGGTGCAGAATCCCCTATGATCAACCAAGTGAGAATCTGCATTCAACCGCTTCATTTCAAcccaataaaaaacaacaacaactgtcatatata

Function

GO: NA

KEGG:

id description
K14799 TSR1; pre-rRNA-processing protein TSR1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005764 True 3425 mRNA 0.57 15 9397125 9406873

Neighbor

gene id symbol gene type direction distance location
AMCG00005783 NA coding upstream 47704 9346443 ~ 9349421 (+)
AMCG00005784 NA coding upstream 66535 9299585 ~ 9330590 (+)
AMCG00005775 NA coding upstream 127889 9252354 ~ 9269236 (+)
AMCG00005774 ssh2 coding upstream 145295 9240634 ~ 9251830 (+)
AMCG00005750 NA coding upstream 216320 9165033 ~ 9180805 (+)
AMCG00005763 NA coding downstream 18434 9425307 ~ 9427544 (+)
AMCG00005767 LOC103370200 coding downstream 392124 9798997 ~ 9808730 (+)
AMCG00005768 NA coding downstream 454046 9860919 ~ 9868588 (+)
AMCG00005808 slc13a5,LOC106612936,LOC106581085 coding downstream 500973 9907846 ~ 9921070 (+)
AMCG00005807 med31,LOC107699947,LOC107599285,LOC107684212 coding downstream 534589 9941462 ~ 9943324 (+)
G154175 NA non-coding upstream 202938 9192296 ~ 9194187 (+)
G154147 NA non-coding upstream 288755 9100429 ~ 9108370 (+)
G154143 NA non-coding upstream 302455 9093909 ~ 9094670 (+)
G154091 NA non-coding upstream 325378 9021950 ~ 9071747 (+)
G154030 NA non-coding upstream 600701 8793827 ~ 8796424 (+)
G154252 NA non-coding downstream 33620 9440493 ~ 9441381 (+)
G154343 NA non-coding downstream 498899 9905772 ~ 9944143 (+)
G154388 NA non-coding downstream 671434 10078307 ~ 10079436 (+)
G154447 NA non-coding downstream 878641 10285514 ~ 10332094 (+)
G154451 NA non-coding downstream 896084 10302957 ~ 10303497 (+)
AMCG00005787 NA other upstream 543025 8828578 ~ 8854100 (+)
AMCG00005720 NA other upstream 890028 8498502 ~ 8507097 (+)
G153815 NA other upstream 1166535 8213904 ~ 8230590 (+)
AMCG00005660 LOC106603524 other upstream 1609254 7749183 ~ 7787871 (+)
AMCG00005694 NA other upstream 2062554 7307058 ~ 7334571 (+)
G154251 NA other downstream 29027 9435900 ~ 9438269 (+)
G154283 NA other downstream 180929 9587802 ~ 9589798 (+)
G154330 NA other downstream 474509 9881382 ~ 9883955 (+)
AMCG00005802 NA other downstream 658287 10065160 ~ 10089769 (+)
AMCG00005929 NA other downstream 860400 10267273 ~ 10356244 (+)

Expression


Co-expression Network