AMCG00005765


Basic Information

Item Value
gene id AMCG00005765
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 9439061 ~ 9463061 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005765
GGTCAGGGGGTCACGCTCTGGGGCATTGGCTTGTGGCCACAGGTCACGGGGAGGTCGCGGGCCAGCGTCACAACCTGGCGGTCATGGCGATAGCGGCAGACTGTAAGCGGGTCACCGTGCTGAAGTATTTCCTGGAAGCTCTGTGTGGACAAGAAGAGCCTCTGCTGGCGTTCAAGGGTGGAAAGTATGTGTCGATGGCAGCCGTCCCACACACCATGGGAAAGGAAACAGGAAGCCATGAGGGAAAACAAGCAGACAATCAGGATGACGACGTGCTGATCGAGGCACTGGATGAGTTCTCGGAGCCGGAGGGCAGCGGCAGCGAGGACGACATCCGAGAGCTGCGGGCGCGGCGCCAGGCCTTGTCCCTCAAACTTGCACAGGAGCAGCGGCGTAGAGACCAGATACAGgcagTGCTGCAGACCTGCCGGCAGCTGGAGATCGAGGTCTCGCCCGTGTTTCTCGTCCCCGACACCAACGGCTTCATCGACCACCTGGACAGCCTGAAGTGCCTGCTGGGCTGTGGCCTCTTTATCCTCGTGGTGCCCCTCATCGTGATCACGGAGCTGGACGGGCTGGCGCGGGGCCAGGACTCGGAGCGGCGCAGCGGGAGCCACGCGCGTCAGGTGCAGGAGCGGGCACGGGCCGCCGTGGCCTTCCTAGAGCGAGGATTTGAGGCACGGGAGCCCGGCCTGCGTGCCCTGACCAGCCGCGGCAATGAGCTGGAGTCCATCGCCTTCCGCAGCGAGGACACCTCCGGACAGCAGGGGAACAACGATGACCTCATCCTGTCCTGCTGCCTGCACTACTGCAAGGACAAGGCCAAGGACTTCATGCCCACACAGAGAGaTGATCCAGTCCGGCTGCGCAGGGAGGTGGTTCTGCTGACGGACGACCGCAACCTGCGTGTGAAGGCGCTGACCCGAAACGTCCCCGTGCGCGACATCCCCGCCTTCCTCAAGTGGGCGAAAGTGGGATGAGAGCAGACCAAACAGGGCCCAACACCGCACGGGAGAAGAGAACAAGATGAGAAAACAcaacccaaaaaacaaaaaaacatgatacggatctaaaataataaaaacttccTCTGTACGCAACAACAAAGATCAGAAACCATGAatgagaaagagaaggagagaaagagaggtgtAAAGGAAGGCAAGGtgagatgtttatatatatatatatatatatatatatagagagagagagatgtttatatatatataaatgagaaGAGATTTAGGATGAGGTTGGCTTTAGGAATGCAGGAATGCTAGTCAGGTGTGGCTCTTGAAGTCTTTGGGAAAAGCGTTTCAGTTGAGGAAGTGCGCTCCCACTGCTGGTGAGGAGGAATGAAGGCAAGGCCAGGAGCCGTGGCCACAGGACGGAACCGACCGGCCCCAGGAGTGGGGAGAGACCAGGATGGGGGAGCTGTGCTGTAACTGGGCTGGGCAAAGCAGAAGCAAGCGTGACCTGTAGGGTACATTGTCTtcgttgtgttgttttttgtttcatgtaatGAGATTTGTTTTAGCTGGTGTGCAAGATGACTTAAtgagcttttttattttattattattaatttttttttatggttcaTGGCCACCCAGAAATAcatagcatttgtttttttaatttgacttcTATAGAGAGGGGTTTGTTTCCCCTCCATTTCAGTTTGTACTCTCTTCATAATTAGCGTGGTGCTGGCGTTTCGGCCAGGCCTCTGTCTCTGCTTGCCTCCTCGCCCTCTTTCCTCCAGCTGTCTGGGAGTCCGCTCTATCTGCGGAGGTTGTGGCACTGTAGTTTTGTACAGTCTCCTCTGAAAGGAAGTCGCAGGCGGACAGAATGCAAAAGCCTCTCCTACCCGAGGCATGTGCGTGATTATATTTGCAAACTAGGGGATTCATCCTGGTCCTGCTGTTTTACATATCAAGCAGATTACGCTTTGATATAAAATCTGTATTCAGTTGGACCCTTCTACATAATAAATTGAGAACACCGGCCCACCCTGGGTCTTCTAGTTGTCAAAGCAGGTTAGGACAGGTGAAGTGGAAAGAGTAAAATAGTAACAGTAAAGCACTGGCCCAGGCAACACAGTCCCGGTTCCCTGCTAGTACTGGAAACCACCGGCTATTCTCAGAAGCGTTTCCTGTGCTGGAATCTGATTGCGCATCCCGCCATTGTCAGAATATGTAGAAGAAATTGCATTAAGAGCCGTAATCGAGAAAAAGGAGAGAACCAGCCCTGTCCTTCACGGAGCCTGGGACTAGAGTGTGTCCCCGATCCCTGAGCATGTGCGGACAGGTAAGTGTGGCAGTGCTGTTAGAGGAGAGTGAGGGGGCAGGGCAGGTGGTTTTAGCTCAGCTCTGTGTGCAAGTAGGGACTGGCAGGCAAGTGGAGAAGCGgtggttggggggtggggtggtcacGGCACCCTTTATAGGGAGTAACTGGGCGGCAGGACGGGACTGGGCATCGGGCACATGGACTCCGTCTGGACTTGAGCAAGTTGGCTTCTCTACGACGCAACAGCACACAGGGATGCAGGGATCTTCACAGGACTTGCAAAGCCAAAGGATAATCCCCCTCCCTCTTTGATCAGGAGCCAGGGAGCACTATTGTCCTGCGAGTGAGGACTATCCAAGCACTCAAGGACAGTTCGGGCACTTGATGATGGAACCAAGAGCATTGTTGGCTTTCCCGAAATATTGCCCCTGACGTTTGGGTGATCTCCTCACACCTGAGGAGGAATAGGCAtgtggacagacacagacagtccCTGCTTAGGTTGGGggttatttgaaaaagaaaataatcatcataCTCTACCACCTTTTTGTTAATTGTGTTGGCTTCCAGTTCCCATCATTGGTCAGATTTTCGTTGCCATTGGTGGAACAATATTTTCATTCTTGAAGATGGGGAAACTCCTTTCTTTAGGTATGAAACAATCATAAGAGTTGGCAAAGGGCTTGTTTGATGAAAGGTACGGAGTGGCTGCAGTTTGAATTTTGTTTCCATGTCCAATCCAATCACGTGCCGGTGCCAGCTTTCACACAGGGTGCTCCCTTCAGGCGGGAGAGGCACAATGAGtcgtgcatgcatgtgtgtccCGGTACACCATTGGAAACCAACATGGAATTAACCAccgcccccccc

Function

GO: NA

KEGG:

id description
K11124 SMG6, EST1A; protein SMG6

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005765 True 3168 mRNA 0.53 7 9439061 9463061

Neighbor

gene id symbol gene type direction distance location
AMCG00005785 LOC106613037,LOC105023190,LOC106581166,LOC108431344,LOC105896252 coding downstream 67639 9350434 ~ 9371422 (-)
AMCG00005786 NA coding downstream 99331 9334059 ~ 9339730 (-)
AMCG00005777 NA coding downstream 156321 9273785 ~ 9282740 (-)
AMCG00005779 NA coding downstream 232600 9203915 ~ 9206461 (-)
AMCG00005778 NA coding downstream 237768 9194432 ~ 9201293 (-)
AMCG00005766 NA coding upstream 12516 9475577 ~ 9479846 (-)
AMCG00005773 NA coding upstream 36967 9500028 ~ 9508536 (-)
AMCG00005771 NA coding upstream 58237 9521298 ~ 9535270 (-)
AMCG00005772 NA coding upstream 109876 9572937 ~ 9580695 (-)
AMCG00005770 NA coding upstream 124738 9587799 ~ 9589780 (-)
G154260 NA non-coding downstream 1162 9435880 ~ 9437899 (-)
G154237 NA non-coding downstream 45728 9343755 ~ 9393333 (-)
G154235 NA non-coding downstream 107028 9331343 ~ 9332033 (-)
G154234 git1 non-coding downstream 108528 9325522 ~ 9330533 (-)
G154157 blmh,LOC106612652 non-coding downstream 299235 9128770 ~ 9139826 (-)
G154280 NA non-coding upstream 109154 9572215 ~ 9572908 (-)
G154391 NA non-coding upstream 626493 10089554 ~ 10091616 (-)
G154399 NA non-coding upstream 674367 10137428 ~ 10138925 (-)
G154400 NA non-coding upstream 681422 10144483 ~ 10144931 (-)
G154575 NA non-coding upstream 1112909 10575970 ~ 10576502 (-)
G154250 NA other downstream 4121 9425290 ~ 9434940 (-)
G154142 NA other downstream 346488 9090422 ~ 9092573 (-)
G153806 NA other downstream 1314376 8091748 ~ 8124685 (-)
AMCG00005704 NA other downstream 1437656 7999336 ~ 8001405 (-)
G153733 auts2 other downstream 1650740 7785554 ~ 7788321 (-)
AMCG00005850 NA other upstream 832538 10295599 ~ 10352782 (-)
AMCG00005862 NA other upstream 1080473 10543534 ~ 10551355 (-)
AMCG00005839 LOC103367321,LOC107729686,LOC103398303 other upstream 1275483 10738544 ~ 10752114 (-)
G154677 ef2,eef2,LOC106613766,LOC101482186,LOC107384141,LOC108427162,LOC108414462,LOC102796634 other upstream 1380780 10843841 ~ 10912745 (-)
AMCG00005831 shdb,LOC107719565,LOC107676987,LOC107729709,LOC103027120,LOC106584413,LOC108439278 other upstream 1386454 10849515 ~ 10865796 (-)

Expression


Co-expression Network