AMCG00005767 (LOC103370200)


Basic Information

Item Value
gene id AMCG00005767
gene name LOC103370200
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 9798997 ~ 9808730 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005767
ATGAAACCGCTCGTTACAGACGGGCTGAGCCCTATTGGGGAGCCAAGGCCTGTTCGTGCCAGCCAGGGAGCTTTgaGCTGTGGGCTGGAGTTCCTGCTGGTGCTGTGTGGCGTGGAGCTGTCGTGGTCGTGCCCGCACCACTGTGTCTGCTACACCTCGCCCACCACGGTCAGCTGCCAGGCGCACAACTTCCTGACGGTGCCCGAGGGCATCCCGCCGCACAGCGAGCGCATCTTCCTGCAGAACAACCGCATCAACCGGCTGCTGCGCGGCCACTTCAGCCCGCACACCGTCACGCTGTGGATCTACTCCAACAACATCACCTTCATCGAGCCCAGCACCTTCCACGGCTTCACCCAGTTGGAGGAGCTGGACCTGGGCGACAACCGCTACCTGCGCGCGCTGGACGCAGACACCTTCCGGGGCCTGTCCCGCCTGCACGCCCTGCACCTGTACCGCTGCGGCCTCTCCACCCTGCCCAGCGGCATCTTCCAGGGGCTCAGCAACCTCCAGTACCTCTACCTGCAGGACAACCGCATCGAGTTCCTGCAGGACGACCTGTTTGTGGACCTGCTGAACCTGAGCCACCTCTTCCTGCACGGGAACCAGCTGTGGAGCCTGCACCAGAACACCTTCCGCGGCCTGGGCAGCCTGGACCGCCTGCTGCTGCATCAGAACCAGCTGCAGTGGGTGGACCGCTGGGCCTTCCACGACCTGAAGCGGCTCACCACCCTTTACCTGTTCAACAACACCCTGGGCGAGCTGTCGGGCGAGTGCCTGGCACAGCTGCCCGCGCTGGAGTACCTGCGGCTCAACGACAACCCGTGGGAGTGCGACTGCAAGGCCCGCTCGCTCTGGGATTGGCTGCAGCGCTTCCGGGGCTCCAGCTCCTCCGTGGTGTGCAAGGCGCCAGAGGAGCTCAGCGGCAAGGACCTCAAGCACCTGAGCAAGGAGGACTTCCCCAACTGCTCAGGCTCCGAGTCGCTGCACCAGATTAAGACCAGCACCTGGACCACGGCCGACAAGGTGTCCCTGAAGAAGGACCACCACTCGCACCACCACACCCGGCACAACACGCACCACCACCATGGCCCGCCTGAGCCACCTGCCCCGCCTGTGCCCCTGCCCCCGCCCGGAGACGCCATGGAAGGCCCTCCCTCTATAAACGGGGTAGCCTCGGGGGGGCGACCCGGGGGGCAGAGGCCTGGGCGCTCCCGGAACTGCACCCGCCAGCGCCCCCGGGGCCCCAAGAAGGGCCTAAACGAGGTGCACACCTTGGATGAGATGGCTGACAAGGAATACTCGCCCCCCAACTTCCCGGGCGAGAGCAAGTATGACCACACGTCCGGAGCCCCCCGCAGGAAAGCCAAGTGCACTCCCAGGACCCCCGTGCGCCCCCCCAGCGGGGTCCAGCAAGCCACCAGCCGGGCGTCCCCCCTGCTGCCACACCACCTGACTCGAGCCCTGGCCCTGCTAGCACCACTGACTGCGgTCATTTGCCGATTCCTGGAGATGAATGAAATGCTGGTGGGATTTGGCGGGATTAAAGCAAGGGATCCTAATCATGCGAAAGGACTGGGAAAAGCGGAAGGGGAAAGAGCGCCCCCCTCACCACGGCTTACTCCGGCCCAGCGCACCACAACCCCCACCACAGCCGACAGATGTTCCAACAGAAAGCTGCCCCGCTTCTCCCCCGAGGAACGCAGTCTGATTCGGAAGCGCGAGGCCGGCGCTGTCGCAGTCCCGCTGAGCGATCGCCGTGCGAGGCAGAGACGGCGCCTGACTCACCGTGCCTCACGCTGCAGCCGGCCCCCACAGGAGCCTATCACCGCTCTCTGTACAGGCAGCCACTCCTGCCTAACGAAAAACTAA

Function

NR:

description
PREDICTED: reticulon-4 receptor-like 1, partial

GO:

id name namespace
GO:0005515 protein binding molecular_function

KEGG:

id description
K16660 RTN4RL1, NGR3; reticulon-4 receptor-like 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005767 True 1872 mRNA 0.65 6 9798997 9808730

Neighbor

gene id symbol gene type direction distance location
AMCG00005763 NA coding upstream 371453 9425307 ~ 9427544 (+)
AMCG00005764 NA coding upstream 392124 9397125 ~ 9406873 (+)
AMCG00005783 NA coding upstream 449576 9346443 ~ 9349421 (+)
AMCG00005784 NA coding upstream 468407 9299585 ~ 9330590 (+)
AMCG00005775 NA coding upstream 529761 9252354 ~ 9269236 (+)
AMCG00005768 NA coding downstream 52189 9860919 ~ 9868588 (+)
AMCG00005808 slc13a5,LOC106612936,LOC106581085 coding downstream 99116 9907846 ~ 9921070 (+)
AMCG00005807 med31,LOC107699947,LOC107599285,LOC107684212 coding downstream 132732 9941462 ~ 9943324 (+)
AMCG00005806 NA coding downstream 138022 9946752 ~ 9968147 (+)
AMCG00005799 NA coding downstream 212237 10020967 ~ 10032822 (+)
G154252 NA non-coding upstream 357616 9440493 ~ 9441381 (+)
G154175 NA non-coding upstream 604810 9192296 ~ 9194187 (+)
G154147 NA non-coding upstream 690627 9100429 ~ 9108370 (+)
G154143 NA non-coding upstream 704327 9093909 ~ 9094670 (+)
G154091 NA non-coding upstream 727250 9021950 ~ 9071747 (+)
G154343 NA non-coding downstream 97042 9905772 ~ 9944143 (+)
G154388 NA non-coding downstream 269577 10078307 ~ 10079436 (+)
G154447 NA non-coding downstream 476784 10285514 ~ 10332094 (+)
G154451 NA non-coding downstream 494227 10302957 ~ 10303497 (+)
G154473 NA non-coding downstream 611176 10419906 ~ 10489854 (+)
G154283 NA other upstream 209199 9587802 ~ 9589798 (+)
G154251 NA other upstream 360728 9435900 ~ 9438269 (+)
AMCG00005787 NA other upstream 944897 8828578 ~ 8854100 (+)
AMCG00005720 NA other upstream 1291900 8498502 ~ 8507097 (+)
G153815 NA other upstream 1568407 8213904 ~ 8230590 (+)
G154330 NA other downstream 72652 9881382 ~ 9883955 (+)
AMCG00005802 NA other downstream 256430 10065160 ~ 10089769 (+)
AMCG00005929 NA other downstream 458543 10267273 ~ 10356244 (+)
AMCG00005851 NA other downstream 489159 10297889 ~ 10304909 (+)
AMCG00005821 NA other downstream 653807 10462537 ~ 10469406 (+)

Expression


Co-expression Network