AMCG00005770


Basic Information

Item Value
gene id AMCG00005770
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 9587799 ~ 9589780 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005770
CAAATCCCTTCCCACCTGTcgcagctctgcgcggctccaccaatgggctCGGTGCgcttgtgcagatctgtgcgcagaactgcgggatCTGCGCTGCGCGGCCGGCCGCCTCCCACTGCTGCCCCCGGAACCGCTTGCAGCCGGATGCGTTTTTCGGCGCAGGCGGCTGAGAGAGCGCAGACACGGTGTTTGTGGCCGGATTGTGCGTGTCGACCATGTCGTCCTCGTCGCCCCGCGGCCTCCTCCGCATCCTGTGCGTGCACGGCTACCGGCAGAGCGGCGCTGTGTTCCGGGACAGGACCGGCGCCCTGCGGAAGGCCCTGAAGAAGCACGCCGAGCTGGTGTACATCAGCGCCCCGCTCCGGATCGGCGAGCTGCGGCAGCCCGGGCCGGCGCTGGCGGACTCGCAGGCCACGGACGCGGTGCCCCCTCAGGAGGAGGACGCCAGGGGCTGGTGGTTTTCCAACGCCCAGGAGCAGACCTTCAATGCCGGGGAGGTCTGCGACTCGAGCCTGGGGCTGGAGGAGAGCCTGGAGGAGGTGCGGCGGGCGGTGAGGGAGCAGGGCCCCTTCGACGGCGTGTTGGGCTTCAGTCAGGGGGCCGCGCTGGTGGCCATGCTGTGCGCGCTGCAGGAGAGCGGTCAGGAGGCCGGTCTGGGCTTCCGCTTCGCCCTGCTGGTGGCGGGCTTCCGCAGCCTTTGTGTCGCACACGCCCGTTTCTACACCCCACAGCCCCTGGCCATGCCAACGCTTCATGTGTTTGGAGATGCTGACCGGGTCATCCCAGCCCCCCTGAGCCAGGACCTGCTGTCAGTCTTCCACAGCCCGCAGGTCGTCACACACCCCGGGGGGCACTACATCCCCGCCGGCGCTGCGCAGAAACGGGCCTACATCCAGTTCCTGGAGCAGTTCCTCAGCAAGGGAGCAGTGGGCAGCTCTTAAACGCTGGCAGCATGTAGATCACCGCGGTCTGTACGCCTCACTGTGTCTGAGGGGCTGGAGAGACCCAGTCTAGCAGGTCTATAGGCGTCTTCAGTCACTGGCTGGAAATCGTAGATCAAACAAGATCTCAAGTTGGCCACCTCTCATCTAAGAAATTAAGATTTACAGTCAAATGAGACGCAAGAGACCCTGGGCTGTCCTCGGTTTAGGTTTCAGTGTTTCCATTAGGGTTAGGGGCCTGGATAGGGTCTGGTTCCACTGCAGTAAGCCCCTTTCACACTAGCATGCCCTACCTGGGTCGACCCAACCCAGAGCACAGCATCCAAAATCCAATGCATCAGTCAGAGTTTAAAGTGGCCATGAGATCTTTGAATTAACTAAATTTTATTCGATGGCACTGAAGTCCAGCAGCCCCCCAGGGCAAGAACATTCTCCTCCAGTACAGATTGCAGGTGACCAACCAACTGACCAGTCCAGTGGTTCTAGTGCCAGCCCGACCGTTCTGGAACCGGAGCCACCGGAGCTGCACTAGTGCATGGATTGGAGAATTACAGGATATTTGCACAACTTCTCAGGGAGGACAGATATGTTTTCACGGGCATAAATTTGTCAATaaacatgtcaaaataaa

Function

GO:

id name namespace
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044428 obsolete nuclear part cellular_component
GO:0032991 protein-containing complex cellular_component

KEGG:

id description
ko03460 Fanconi anemia pathway

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005770 True 1572 mRNA 0.61 2 9587799 9589780

Neighbor

gene id symbol gene type direction distance location
AMCG00005772 NA coding downstream 7104 9572937 ~ 9580695 (-)
AMCG00005771 NA coding downstream 52529 9521298 ~ 9535270 (-)
AMCG00005773 NA coding downstream 79263 9500028 ~ 9508536 (-)
AMCG00005766 NA coding downstream 107953 9475577 ~ 9479846 (-)
AMCG00005765 NA coding downstream 124738 9439061 ~ 9463061 (-)
AMCG00005780 LOC103366110 coding upstream 19311 9609091 ~ 9625629 (-)
AMCG00005782 NA coding upstream 44004 9633784 ~ 9639483 (-)
AMCG00005781 NA coding upstream 83910 9673690 ~ 9679085 (-)
AMCG00005769 NA coding upstream 248377 9838157 ~ 9860924 (-)
AMCG00005811 NA coding upstream 280298 9870078 ~ 9890583 (-)
G154280 NA non-coding downstream 14891 9572215 ~ 9572908 (-)
G154260 NA non-coding downstream 149900 9435880 ~ 9437899 (-)
G154237 NA non-coding downstream 194466 9343755 ~ 9393333 (-)
G154235 NA non-coding downstream 255766 9331343 ~ 9332033 (-)
G154234 git1 non-coding downstream 257266 9325522 ~ 9330533 (-)
G154391 NA non-coding upstream 499774 10089554 ~ 10091616 (-)
G154399 NA non-coding upstream 547648 10137428 ~ 10138925 (-)
G154400 NA non-coding upstream 554703 10144483 ~ 10144931 (-)
G154575 NA non-coding upstream 986190 10575970 ~ 10576502 (-)
G154642 NA non-coding upstream 1100368 10690148 ~ 10693965 (-)
G154250 NA other downstream 152859 9425290 ~ 9434940 (-)
G154142 NA other downstream 495226 9090422 ~ 9092573 (-)
G153806 NA other downstream 1463114 8091748 ~ 8124685 (-)
AMCG00005704 NA other downstream 1586394 7999336 ~ 8001405 (-)
G153733 auts2 other downstream 1799478 7785554 ~ 7788321 (-)
AMCG00005850 NA other upstream 705819 10295599 ~ 10352782 (-)
AMCG00005862 NA other upstream 953754 10543534 ~ 10551355 (-)
AMCG00005839 LOC103367321,LOC107729686,LOC103398303 other upstream 1148764 10738544 ~ 10752114 (-)
G154677 ef2,eef2,LOC106613766,LOC101482186,LOC107384141,LOC108427162,LOC108414462,LOC102796634 other upstream 1254061 10843841 ~ 10912745 (-)
AMCG00005831 shdb,LOC107719565,LOC107676987,LOC107729709,LOC103027120,LOC106584413,LOC108439278 other upstream 1259735 10849515 ~ 10865796 (-)

Expression


Co-expression Network