AMCG00005771


Basic Information

Item Value
gene id AMCG00005771
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 9521298 ~ 9535270 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005771
ATGTTAACAACACACAGCGCCACAGACTGCGCTCCGGCGGGGCTCACACCACCAGCACCGGCCTCCCCCAGCGCTCCCAGTCCCGGGACCCAGGAGCCCCAGACACACCGCCCGAGAGAGGCCGGGGACGAGCTGCGGAGAGGCGGCAAATTTCGTTGGTGTGAGTCAGAGAGACACAATGGCCTTCGCGGCCTACGCAGGCAGGACCCGGGTGAGAGCAGGGGGCGAACAATTAACGGACTGGACGACCAGCATGTCTccgagcgagcgagcgagcgcATCGAGGCaaaaccagaaccagaaccaaAGCATCACGAAGGTGGTCTGAAACGGGAGGGGAAGCGCCCTGCTCTGCAACTGTACCAGCCGGGAGTGTGCCGCCTGCACCCACGCCGGGACACCTCCCTGAGCAGTGAGGGAGAGGGCCTGACCGAACTGGACCAGCACCAGAAccaagaggaagaggaggggggagaAGAAGTGAATAAGCAGGTCAGAGAGGTAGAagtggaagaggaggaggcagagggggcAGGGGCGGTGGAGGAGGTAGGAGCAACAGAAATGTCCCAGGGCACGGTCCAGCAAGGTGACCAGATGGGCGGCACAAACACCAATGTCGGCAAGCGCGCTGCAGATCCTGCCCCTGCCGCCGGTGCATCCCCGAAACCGGCACGCAGGGTACGCAAACCAGACCGGGAGATCTATCAGCCGGGAGGAAGGAGacttcagcagcagcagacaaACAAAGACCCAGGTCCGAGCAGGGAGCCCACCGCTGAGAAAGTCCCGGTGGCTGTGAAGGTTCAGCCAGCAGTCAAAGAAGTCCGGTCCAGCAAGGAGAGTCCGGCCCACAGGGACGTTAAAGCAAACAAGGAGAGGAAGCAGGAGCCGGGGCCGATCAAGGAACCGCCAGCAAAGTGCAAGATTCCAGGGACCGGGAAGCCTTCGGGGAACGGGCAAGACCTATGgcgagggagggagaaggagaaggaggacagCTGGAGCCCCGACCGACGGCCCATCAGTGTCAGGAGCCGgggcggaggaggaggcagCAGGAACACCGGCGGGGTCCTGAGGGTTTCTTTTGACAAAGCGGGCAATAGCCTGACCGCCTCTGAAGTCTCTGAGCAACGGAAGAAAGAGGAGACGGGGCCCAGAGGCAGGGGGAGGGGAATCCTGATTCTTCCCGCCCACACAGACCTGACTGCTGCCCCAGAGCCGGGGCCTCGACTCCTGATCGGGGGACGTGGGGGCAGGGGGCGTGCCAGATACCCCTACCCTTATCACCTCCCCTACCAGATGCCTGGCACCAATGGGgtgtacccccctccccctggtGCCTTGTATTTCTCCGGGTACGGGCAGCCTGGGTCACAGGGATACCTGCCCGCCATGACCCCTGAGGAGGCGGAGGTGCAGGTGCGTGGGCTGCAGCAGCAAGAGCTGGCCAAACTGCTCCGCATCGCAGACAGCCAGGAGCTGCAGCTCAGCAACCTGCTGTCCAGGGATCGGCTCAGCCCAGAGGGGCTGGACAGGATGACACAGCTGAGGGTGGAGCTGCTCATTCTGTACGAGCGCGTAATCCTCAGTGACATCGAGTTCTCTGACACTCAGAACCTGGATCAGGCTCTGTGGAAGAACGTCTTCTACCAGGTGATTGAGAAGTTCCGCCAGCTACTGAAGGACCCGACCTGCGAGGCGATGGAACGGATCAGGACCATGCTGCTGACACTGCTGGATGAGGGGGCCGTGTTCTTCGACGCGCTCCTGCAGAAGCTGCAGACTGTGAAGTATGCTCTGATCAGCGCTCAGCGGTGCATGATCTGCCAGGGAGACATCGCCAGGTACCGAGAGCAGGCCAACGACACGACCAACTACGGCAAGGCGCGCAGctggTACCTGAAGGCGCAGCAGATCGCACCCAAAAACGGACGCCCCTACAACCAGCTGGCCCTACTCGCAGTGTACACGaagCGGAAACTGGATGCGgcagacCAGGTggagcggcggcggcggcagcagcagcagagggagGGGGCATCAGGGGGCGGCCCAGGGCTGCGGGGCGCCGGGGGTGCCCGTGGAGAGGACGCCGCACGGGTGGAGATCTGGGTGCGGCCTGGGGGGCACACATTACCGCGCACAGGCAGCGAGTCGGGCCGGGAGTCCGAGCAGGACAGCGAACTGGGGGCTCTGAGCACCAGCGATagggatacagagCATCACTGCATTATGTTCTGCCACTGGATGGGCAGCGATGATGCACACTGTGGGCCAGCGCGCTTTGTTGCCATCCGCGCCTATGAGAACTGA

Function

GO: NA

KEGG:

id description
ko00310 Lysine degradation

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005771 True 2319 mRNA 0.63 12 9521298 9535270

Neighbor

gene id symbol gene type direction distance location
AMCG00005773 NA coding downstream 12762 9500028 ~ 9508536 (-)
AMCG00005766 NA coding downstream 41452 9475577 ~ 9479846 (-)
AMCG00005765 NA coding downstream 58237 9439061 ~ 9463061 (-)
AMCG00005785 LOC106613037,LOC105023190,LOC106581166,LOC108431344,LOC105896252 coding downstream 149876 9350434 ~ 9371422 (-)
AMCG00005786 NA coding downstream 181568 9334059 ~ 9339730 (-)
AMCG00005772 NA coding upstream 37667 9572937 ~ 9580695 (-)
AMCG00005770 NA coding upstream 52529 9587799 ~ 9589780 (-)
AMCG00005780 LOC103366110 coding upstream 73821 9609091 ~ 9625629 (-)
AMCG00005782 NA coding upstream 98514 9633784 ~ 9639483 (-)
AMCG00005781 NA coding upstream 138420 9673690 ~ 9679085 (-)
G154260 NA non-coding downstream 83399 9435880 ~ 9437899 (-)
G154237 NA non-coding downstream 127965 9343755 ~ 9393333 (-)
G154235 NA non-coding downstream 189265 9331343 ~ 9332033 (-)
G154234 git1 non-coding downstream 190765 9325522 ~ 9330533 (-)
G154157 blmh,LOC106612652 non-coding downstream 381472 9128770 ~ 9139826 (-)
G154280 NA non-coding upstream 36945 9572215 ~ 9572908 (-)
G154391 NA non-coding upstream 554284 10089554 ~ 10091616 (-)
G154399 NA non-coding upstream 602158 10137428 ~ 10138925 (-)
G154400 NA non-coding upstream 609213 10144483 ~ 10144931 (-)
G154575 NA non-coding upstream 1040700 10575970 ~ 10576502 (-)
G154250 NA other downstream 86358 9425290 ~ 9434940 (-)
G154142 NA other downstream 428725 9090422 ~ 9092573 (-)
G153806 NA other downstream 1396613 8091748 ~ 8124685 (-)
AMCG00005704 NA other downstream 1519893 7999336 ~ 8001405 (-)
G153733 auts2 other downstream 1732977 7785554 ~ 7788321 (-)
AMCG00005850 NA other upstream 760329 10295599 ~ 10352782 (-)
AMCG00005862 NA other upstream 1008264 10543534 ~ 10551355 (-)
AMCG00005839 LOC103367321,LOC107729686,LOC103398303 other upstream 1203274 10738544 ~ 10752114 (-)
G154677 ef2,eef2,LOC106613766,LOC101482186,LOC107384141,LOC108427162,LOC108414462,LOC102796634 other upstream 1308571 10843841 ~ 10912745 (-)
AMCG00005831 shdb,LOC107719565,LOC107676987,LOC107729709,LOC103027120,LOC106584413,LOC108439278 other upstream 1314245 10849515 ~ 10865796 (-)

Expression


Co-expression Network