AMCG00005790


Basic Information

Item Value
gene id AMCG00005790
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 8862478 ~ 8864223 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005790
ATGACAGAGTCGGCAGCACTAAGGAGCACAGATGCACCCGACTCACCGACCAGCCTGGCAGAGCTGGCGTATCTAATTGTGCCCCCCGGCCCTGCCCCCACTGGTGCTGTTTCCCAGCCTCCTCCAGTCCCGTCTCTGGGAGCTAGTTCCTTGGTGGGGGGAGGTTCCTGCAGTGAGGGCGAGCTGAGGGGCGCCGGGTCTCTCCCTGGGGTTTCTGGCCGACCCGGCGCTGCGTGGCGAGAGCCCAGCGTGGCGCTGCCTGACAGATCCCGCAGCTCCGCACTGCTGACGGCTCCTAGATGAAGGAAATCAAACCCACTTTTATGATTTTACTAACCTGCAAATAGACGAAGACTCTTTCAGTTAATTAGGAGAGGGTAATTAGCCCGGCCGCGTTGAGCACTACTTACTGCTTCTCTTAGAAAATGATGGTTTGACGCTGCGTTTCCCATTAATATTGAATGCACTGGCTTAGGTAGAATGTGTTGAGACCAAACCTAGACCTGcaggttttttatttgttttataccattttaaatgaaaaataaccttTAATTTCCATTATAGCACAAATGGAAAGAGTTCTAACGTTTAGAGTTCTAACGTTATCTGGTGCTTTGTCGCGCGTGTCCATCGCCGCCAGGAACAGAGCGTTTAATGAAGGATTGTAATAGAATCTAAATATGATGACTGTGGAACAAATGAAGGCCGCGTCCGTGTGTTCGGACGTGGCACCTCCCATCCCTGGATCCAGCCAAGACCATTTCAAGAGCCCGACATTTCCTCATTTTAAATCAGCGTTTTTAAAAGTGGCCTCAATCGTCCACGAACATTTCAGAAAGTCTCTGGTGCAGCTGAGCGAATGCAATATGGGGATATAGCGACCGTGGTGCCGCATAGTCCAGGGGTTCTGGTGCACGGTCATTCGCGGTGCAGCTGCCTCAGTCCCGGTCCCAGGGGTGTGGGTCCTTATCCACTTAAATGCCTGATCACTTTAATTGCATCACAGCTTCGTCTTAATTGGTCCGTTGGGCGGCCTGCTGGGGGGCGATGATGGGATCTATATTAGGGGAAATtactggaaaagagaagctgtgaTCTTTTGgtagatttgtttattttttttgccttctAGATCTTTAAAAACTTGCTTCAGATTCAGATGGATCTAGGAGCAGCTGAATGTTATTTCGGAAcagcactttttgtttttaagaaatgtatattttttagtGTTGGGAAAAAAAGGTTCATATCACTTGCTAaacatgcatttgtgtttgtcagAGTGTAAGATGTGGCATAAAGGCAACACATAACCTTTAACAgtaactataatatatataattaaccaCTGCATCTAAAATCCTGAGCAAATtccactgaaatatatattcttaaagcTTCTGTTCTCTATCCTAgtgaaatatatactttttattatctCTTAGatgtattaaaacatgtttattccaTATTCAATCCATGTTCAATGAAGGAAAAGATCAGAGCATTAATATCGGACTGTGGACAGGTCTTCCTTTCCTGTAATTCTCACTGTATCCTAATAAACAGAACGACTGACTGACAGTGCCATCGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005790 True 1600 mRNA 0.45 2 8862478 8864223

Neighbor

gene id symbol gene type direction distance location
AMCG00005791 NA coding upstream 106 8854382 ~ 8862372 (+)
AMCG00005755 NA coding upstream 85606 8772389 ~ 8776872 (+)
AMCG00005754 NA coding upstream 100408 8756975 ~ 8762070 (+)
AMCG00005757 unc119b,LOC107713212,LOC108431312,LOC107704800 coding upstream 146754 8707225 ~ 8715724 (+)
AMCG00005756 crybb1,LOC105898201,LOC102220912,LOC106612853 coding upstream 165490 8695146 ~ 8696988 (+)
AMCG00005789 NA coding downstream 5686 8869909 ~ 8873125 (+)
AMCG00005788 NA coding downstream 12187 8876410 ~ 8883801 (+)
AMCG00005742 NA coding downstream 33054 8897277 ~ 8904084 (+)
AMCG00005746 NA coding downstream 145961 9010184 ~ 9016738 (+)
AMCG00005745 NA coding downstream 171065 9035288 ~ 9039062 (+)
G154025 NA non-coding upstream 57174 8781989 ~ 8805304 (+)
G154030 NA non-coding upstream 66054 8793827 ~ 8796424 (+)
G153955 NA non-coding upstream 132323 8729803 ~ 8730155 (+)
G153859 NA non-coding upstream 510729 8345678 ~ 8351749 (+)
G153816 NA non-coding upstream 584404 8251301 ~ 8278074 (+)
G154091 NA non-coding downstream 157727 9021950 ~ 9071747 (+)
G154143 NA non-coding downstream 229686 9093909 ~ 9094670 (+)
G154147 NA non-coding downstream 236206 9100429 ~ 9108370 (+)
G154175 NA non-coding downstream 328073 9192296 ~ 9194187 (+)
G154252 NA non-coding downstream 576270 9440493 ~ 9441381 (+)
AMCG00005787 NA other upstream 8378 8828578 ~ 8854100 (+)
AMCG00005720 NA other upstream 355381 8498502 ~ 8507097 (+)
G153815 NA other upstream 631888 8213904 ~ 8230590 (+)
AMCG00005660 LOC106603524 other upstream 1074607 7749183 ~ 7787871 (+)
AMCG00005694 NA other upstream 1527907 7307058 ~ 7334571 (+)
G154251 NA other downstream 571677 9435900 ~ 9438269 (+)
G154283 NA other downstream 723579 9587802 ~ 9589798 (+)
G154330 NA other downstream 1017159 9881382 ~ 9883955 (+)
AMCG00005802 NA other downstream 1200937 10065160 ~ 10089769 (+)
AMCG00005929 NA other downstream 1403050 10267273 ~ 10356244 (+)

Expression


Co-expression Network