AMCG00005802


Basic Information

Item Value
gene id AMCG00005802
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 10065160 ~ 10089769 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005802
ATGGATGAGAGAACCGATTCTCCAGCAATCCGAGAGACACCTGCAGAGGACCCCAGCCCGAGTTCCAAGCTCTTCTGCTGTGCCTGTCTGAGACGATGGATCCCACTGGTTTACAGAGAAGAGCTTTATGAAGTCCTGCGCTTAACTGGGCCTTTGGAAACCTTCAAAAGTGCCAAGAAGGCTACAACTCAGCCCAAGGCTCTATACATCATTTTCTGCTCTAGCTGGTCTACAGCATCCCTGCAGGAGTGGGGGGCCTTCATGCAGCTGGCCATTCCCAGCACCCTCATGACGTGCTTCGAGTGGTGGATTTTCGAGATCGGGAACATCCTAGCAGGTATGCTGGGGCAGATAGACCTTGGGGCCCAACATGTGATCATGGAGCTGGGATCAATTGCTTATATGATCCCCGCAGGAATTCAAGCAGCGGCCTGCGTGCGTGTGGGGAACGCGCTGGGGGCCGGCCAGACTGCCAAGGCGCTCTTGTCCAGCAAGGTTACCCTCATCTTTGCAGgTTGTCTGTCTGGGGTTTTGGCCATCATACTGGGATCCACAAAGAATGTGATTGGCTACATCTTCACCTCTGATGAAGAGATTGTGCAGACGGTTTCACATGTCATGAACGTTTACCTTCCACTGCAGGTTTGCGATGCACTTGTGtgtGTCTCTTCAGGCATCTTCCTGGGAGCGGGAAAGCAGAAGATTCCAGCAGTTGCTAATCTTATTACGTACTACTCCATCGGTCTCCCTGTTGGGATCTCTTTAATGTTTGCAGCAAAGCTAGGAGTCATTGGCCTGTGGCTGGGTTTGCTGATTTGTGTGTGCCTGCAGGCCACCGCCTTCATCACAGTCATCATAAAACTGAACTGGAAGCAGGTGACCAAGGAGGCAAGTCCTGTCCACTCCTCTGCCCTGGCTCGATCCAAGAGGAAAGTGCATGTGGTACGCGTGGGGATGAAGCCCCCTATTGGAGAGACTGTGCAAGACACCCTGTCCATCCCGGGCCCTGGACAGCAGCCCGCAGAGCAGAGCGGAGAGTTCCTGGATGAACTGCTGGCCACTGCAGTGGTCGGAACCCAGGCCAACACCGAGGTGCTGGTGAAAGAAACTGATCTTTGA
>TU194427
GTTGCGGGCGCTGCGGGTGAGTCTGCGCACTGCGCCGCTCTGCTGCCGGGCCTCCAGCGCCTCCCAGCTCGGGGTGTCGCTGACGTTGGTCTGCACGGCCTTGAGCGGCAGGCGCTTGCGCAGGGACATGCGCAGAGAGTTGAGCGACGTGGAGGCGCGCAGCTTGCGGAAGCGGTCGGGCCGGGGAGCCGGGCTGTCCCCCTCGTCCGACTCGTCCAGGACCCGGTGCGTCCGCCAGCCCGCCCCGTGCAGCGCGGACGACATGACTCGCGGGGTGGAGGAAATGGATGAGAGAACCGATTCTCCAGCAATCCGAGAGACACCTGCAGAGGACCCCAGCCCGAGTTCCAAGCTCTTCTGCTGTGCCTGTCTGAGACGATGGATCCCACTGGTTTACAGAGAAGAGCTTTATGAAGTCCTGCGCTTAACTGGGCCTTTGGT
>TU194450
TAGAGACCTGGGGAGGCTGGTCTACAGCATCCCTGCAGGAGTGGGGGGCCTTCATGCAGCTGGCCATTCCCAGCACCCTCATGACGTGCTTCGAGTGGTGGATTTTCGAGATCGGGAACATCCTAGCAGGTATGCTGGGGCAGATAGACCTTGGGGCCCAACATGTGATCATGGAGCTGGGATCAATTGCTTATATGATCCCCGCAGGAATTCAAGCAGCGGCCTGCGTGCGTGTGGGGAACGCGCTGGGGGCCGGCCAGACTGCCAAGGCGCTCTTGTCCAGCAAGGTTACCCTCATCTTTGCAGgTTGTCTGTCTGGGGTTTTGGCCATCATACTGGGATCCACAAAGAATGTGATTGGCTACATCTTCACCTCTGATGAAGAGATTGTGCAGACGGTTTCACATGTCATGAACGTTTACCTTCCACTGCAGGTTTGCGATGCACTTGTGtgtGTCTCTTCAGGCATCTTCCTGGGAGCGGGAAAGCAGAAGATTCCAGCAGTTGCTAATCTTATTACGTACTACTCCATCGGTCTCCCTGTTGGGATCTCTTTAATGTTTGCAGCAAAGCTAGGAGTCATTGGCCTGTGGCTGGGTTTGCTGATTTGTGTGTGCCTGCAGGCCACCGCCTTCATCACAGTCATCATAAAACTGAACTGGAAGCAGGTGACCAAGGAGGCCCTGGCTCGATCCAAGAGGAAAGTGCATGTGGTACGCGTGGGGATGAAGCCCCCTATTGGAGAGACTGTGCAAGACACCCTGTCCATCCCGGGCCCTGGACAGCAGCCCGCAGAGCAGAGCGGAGAG

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016020 membrane cellular_component
GO:0022857 transmembrane transporter activity molecular_function

KEGG:

id description
K03327 TC.MATE, SLC47A, norM, mdtK, dinF; multidrug resistance protein, MATE family

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005802 True 1119 mRNA 0.54 11 10076345 10089769
TU194427 False 441 TUCP 0.66 2 10065160 10076502
TU194450 False 809 TUCP 0.55 9 10080435 10087692

Neighbor

gene id symbol gene type direction distance location
AMCG00005798 pitpnm3,LOC102785427 coding upstream 12351 10043818 ~ 10052809 (+)
AMCG00005799 NA coding upstream 32338 10020967 ~ 10032822 (+)
AMCG00005806 NA coding upstream 97013 9946752 ~ 9968147 (+)
AMCG00005807 med31,LOC107699947,LOC107599285,LOC107684212 coding upstream 121836 9941462 ~ 9943324 (+)
AMCG00005808 slc13a5,LOC106612936,LOC106581085 coding upstream 144090 9907846 ~ 9921070 (+)
AMCG00005934 NA coding downstream 42359 10132128 ~ 10136716 (+)
AMCG00005928 NA coding downstream 117551 10207320 ~ 10218325 (+)
AMCG00005927 NA coding downstream 170880 10260649 ~ 10261465 (+)
AMCG00005820 NA coding downstream 322756 10412525 ~ 10416137 (+)
AMCG00005819 NA coding downstream 333340 10423109 ~ 10428966 (+)
G154343 NA non-coding upstream 121017 9905772 ~ 9944143 (+)
G154252 NA non-coding upstream 623779 9440493 ~ 9441381 (+)
G154175 NA non-coding upstream 870973 9192296 ~ 9194187 (+)
G154147 NA non-coding upstream 956790 9100429 ~ 9108370 (+)
G154143 NA non-coding upstream 970490 9093909 ~ 9094670 (+)
G154447 NA non-coding downstream 195745 10285514 ~ 10332094 (+)
G154451 NA non-coding downstream 213188 10302957 ~ 10303497 (+)
G154473 NA non-coding downstream 330137 10419906 ~ 10489854 (+)
G154505 NA non-coding downstream 434198 10523967 ~ 10526052 (+)
G154574 NA non-coding downstream 486210 10575979 ~ 10576437 (+)
G154330 NA other upstream 181205 9881382 ~ 9883955 (+)
G154283 NA other upstream 475362 9587802 ~ 9589798 (+)
G154251 NA other upstream 626891 9435900 ~ 9438269 (+)
AMCG00005787 NA other upstream 1211060 8828578 ~ 8854100 (+)
AMCG00005720 NA other upstream 1558063 8498502 ~ 8507097 (+)
AMCG00005929 NA other downstream 177504 10267273 ~ 10356244 (+)
AMCG00005851 NA other downstream 208120 10297889 ~ 10304909 (+)
AMCG00005821 NA other downstream 372768 10462537 ~ 10469406 (+)
G154486 NA other downstream 380774 10470543 ~ 10471631 (+)
G154499 NA other downstream 422735 10512504 ~ 10516390 (+)

Expression


Co-expression Network