AMCG00005821


Basic Information

Item Value
gene id AMCG00005821
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 10462537 ~ 10469406 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005821
ATGGCCGACCCGAAGGAAGATCTGCACAAGATGATCTCCACTCTTGCACTGAAGAACGAGGAGATCCAGAACTTTGTGTGCTCCCTGAAACAGACCCTGCAGAACCTGGAGGTGAACTCCAGCCGTGTGCAGGAGGACCTGGAGAAGGAGTTCAGCTCTCTGTACTCGGTGCTGGACGAGCTGAAGGACAACATGGTGACTCGCATCAAGCAGGAGAGAGCCAGCCGCACCTACGAGGTGCAGGCTGCTAAGGAGATTAAGGATAGCATGAGTCACCTGATGGTCGACTTCGGCCCCGAGAGGGAAATGCTGCTGGCACTCAAATTCCTGCCAGtgcccGGGACCCCTGAGATCATTGTGCCCGACTGCTCAGTATGTGATAACAGCGTGCACGTGGTGTGGACCATGCCCGAGTCCGATGCCAAGATCGACTCCAAGATCGACCACTACGTGCTGGAGTACCGGCGCACCAACCAGCAGGGCCCCCCCCGTGCCCGCGAGGAGCACCCCTGGATGGTGGTGGAGGGCATCCGCGAGACCGAGCACACGCTGACTGGTCTGCGGTTCGACACGCGGTTCATGACGTTCCGTGTGCGCGCGTGCAACAAGGCCGTGGCAGGGGAGTTCTCCGAGGCCATTACACTGGAAACGAGTGCGTTCCTGTTCCGGCTGGACGCGAGCTCGGCCCATCAGAACCTGCGTGTGGAGGACCTCAGTGTGGAGTGGGATGCCACGGGCGGCAAACTGCAGGACATCCGCAAAGAGAAGGCCCGCTCCGGCTCGCCCATGCACTCCCCGGCCAGGAACGCCATGTCGTCTCCTAAGAGAGCCCCCGCGGCTCGGGGCAGTCGGGATCGCTTCACAGCCGAGTCCTACACTGTGCTGGGAGACACGGTGATTGACGGGGGGCAGCAGTACTGGGAGGTGCGCTTCGACCGGGAGAGCAAGGCGTTTGCAGCGGGCGTGGCTCTGCGCACGCTGGGCCGCTTCGAGCAGCTGGGCAAAAACAGCGCCTCCTGGTGTCTGCACCTCAACAACTGGCTGCAGGTCAGCTTCACGGCCAAGCACAACAACAAGGCCCGCACCCTGGAGGTGCCCGTGCCCGACCGCCTAGGGGTGTACTGCAACTACGaggaagAAGAGGAACAGCACCAGCAGCTCCAACGCAAGCCTGTCCTAGAGAACTGGGCCAGAGCCTCCAAGCCTCGCCCAGGGCCGGGCCCCGGACACGACCCCGGTCCGGCCCGTCACCGATCAGCACATCAACCACGACGGGACCAAAAGATTAACAAGCTGTAG
>TU194579
atatttgtgtgcatgtgtgtgtttaattcaaTGCATTCACCGATTACGTTGCTGAGTGCAATTAGAACAAGTGCGGCACAGTAGGGCagctttttgttattgttactgcTGTTAGTGTTGTTCGTGAACTACACTTCCCAGAAACCCGCACTCGCCCCGGTGCGCCTGGTCGCTTGAGGAGGATGCTGCGCGCCCCGCCAGCAtcagcaccagcagcaccaGACCTGTCCGGGCCGcagccgagagagagagagggagaaccGAGCGATccggagagagaaagagacagaccgCAGACATGGCCGACCCGAAGGAAGATCTGCACAAGATGATCTCCACTCTTGCACTGAAGAACGAGGAGATCCAGAACTTTGTGTGCTCCCTGAAACAGACCCTGCAGAACCTGGAGGTGAACTCCAGCCGTGTGCAGGAGGACCTGGAGAAGGAGTTCAGCTCTCTGTACTCGGTGCTGGACGAGCTGAAGGACAACATGGTGACTCGCATCAAGCAGGAGAGAGCCAGCCGCACCTACGAGGTGCAGAGTCAGCTAAGTGCATGCACCAAAGCCCTGGAGAGTTCAGAGGAGTTGCTGGAACTGGCCAATCAGACGCTGtgctcatctgagatggacggCTTCAATAAGTGTGACGATGGCACCGGCGTTCCGGCTTTCTCTGAAGGCGCGAGCGAGCGACAGCATGAGTCACCTGATGGTCGACTTCGGCCCCGAGAGGGAAATGCTGCTGGCACTCAAATTCCTGCCAGtgcccGGGACCCCTGAGATCATTGTGCCCGACTGCTCAGTATGTGATAACAGCGTGCACGTGGTGTGGACCATGCCCGAGTCCGATGCCAAGATCGACTCCAAGATCGACCACTACGTGCTGGAGTACCGGCGCACCAACCAGCAGGGCCCCCCCCGTGCCCGCGAGGAGCACCCCTGGATGGTGGTGGAGGGCATCCGCGAGACCGAGCACACGCTGACTGGTCTGCGGTTCGACACGCGGTTCATGACGTTCCGTGTGCGCGCGTGCAACAAGGCCGTGGCAGGGGAGTTCTCCGAGGCCATTACACTGGAAACGAGTGCGTTCCTGTTCCGGCTGGACGCGAGCTCGGCCCATCAGAACCTGCGTGTGGAGGACCTCAGTGTGGAGTGGGATGCCACGGGCGGCAAACTGCAGGACATCCGCAAAGAGAAGGCCCGCTCCGGCTCGCCCATGCACTCCCCGGCCAGG

Function

GO:

id name namespace
GO:0007049 cell cycle biological_process
GO:0051301 cell division biological_process
GO:0044430 obsolete cytoskeletal part cellular_component
GO:0015630 microtubule cytoskeleton cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005821 True 1299 mRNA 0.62 11 10462835 10469406
TU194579 False 1235 TUCP 0.59 8 10462537 10468351

Neighbor

gene id symbol gene type direction distance location
AMCG00005817 cactin,LOC106600017 coding upstream 26035 10431563 ~ 10436502 (+)
AMCG00005819 NA coding upstream 33571 10423109 ~ 10428966 (+)
AMCG00005820 NA coding upstream 46400 10412525 ~ 10416137 (+)
AMCG00005927 NA coding upstream 201072 10260649 ~ 10261465 (+)
AMCG00005928 NA coding upstream 244212 10207320 ~ 10218325 (+)
AMCG00005818 mpnd,LOC106591182,LOC107717566 coding downstream 10804 10480210 ~ 10486749 (+)
AMCG00005858 NA coding downstream 33101 10502507 ~ 10502822 (+)
AMCG00005856 NA coding downstream 34172 10503578 ~ 10507292 (+)
AMCG00005857 NA coding downstream 51450 10520856 ~ 10523831 (+)
AMCG00005804 LOC106613805,LOC101170792,LOC103364385 coding downstream 146476 10615882 ~ 10623009 (+)
G154447 NA non-coding upstream 130443 10285514 ~ 10332094 (+)
G154451 NA non-coding upstream 159040 10302957 ~ 10303497 (+)
G154388 NA non-coding upstream 383101 10078307 ~ 10079436 (+)
G154343 NA non-coding upstream 518394 9905772 ~ 9944143 (+)
G154252 NA non-coding upstream 1021156 9440493 ~ 9441381 (+)
G154505 NA non-coding downstream 54561 10523967 ~ 10526052 (+)
G154574 NA non-coding downstream 106573 10575979 ~ 10576437 (+)
G154583 NA non-coding downstream 198592 10667998 ~ 10668261 (+)
G154722 NA non-coding downstream 528243 10997649 ~ 10999389 (+)
G154775 NA non-coding downstream 704989 11174395 ~ 11180237 (+)
AMCG00005929 NA other upstream 106293 10267273 ~ 10356244 (+)
AMCG00005851 NA other upstream 157628 10297889 ~ 10304909 (+)
AMCG00005802 NA other upstream 372768 10065160 ~ 10089769 (+)
G154330 NA other upstream 578582 9881382 ~ 9883955 (+)
G154283 NA other upstream 872739 9587802 ~ 9589798 (+)
G154486 NA other downstream 1137 10470543 ~ 10471631 (+)
G154499 NA other downstream 43098 10512504 ~ 10516390 (+)
AMCG00005835 LOC107586405 other downstream 210531 10679937 ~ 10714707 (+)
AMCG00005834 LOC108271164,LOC108430094,LOC107393192,LOC107719559,LOC107699414 other downstream 252346 10721752 ~ 10736626 (+)
G154636 LOC108435919,LOC108271001 other downstream 443991 10913397 ~ 10915729 (+)

Expression


Co-expression Network