AMCG00005824


Basic Information

Item Value
gene id AMCG00005824
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 10391215 ~ 10394151 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005824
ACATTTTCCTGCCAAGCCTGTAAGGGCCAGACCGAGCCGCTCACTTTGCGGCTGTCCAGTGCGGCTGGTCTCAGTGACCCCTGCTGTGCCGTGCCGTACTGCAGTTCTAGACCAGGAATGGACCTGTGCTGTATTGTACCGTACTATAACTTAGggcagccccctccccaccccctgtCGGAGAGCATGGCTCAGGAGACCAATCAGACGCAGGTGCCCATGCTGTGCACTATGGGCTGTGGTTTCTACGGCAACCCCCGCACCAACGGGATGTGCTCCGTGTGCTACAAGGAGCACCTGCAGAGGCAGCAGGGCGGCGGCCGCGTCAGCCCACCAGCACCTACAGCCTCAGCGCCAGTGGTGGCCAGTGGGGGTGCCAGCGTGTCGGTGGAGAGTGGCCCTGCCCCTGGGTCAGAGGGCAGTCACGATTCGGAGGACAGCAAGGCCAGctcctccagccCTGTGACCCAGCAGATGACAGCGATGAGCATCTCCCGCGACGACGGCGCCTCGGAGTCGGACCGGACAGAGgtcgaggaggaggaggcggccCCCACAGCCACAGGGGCGGGGCTGGACGCAGCACGGGGCACCTCTGAGGGTGGAGACAAGACACCCGACAAGAGCAGGAAGAAGAATCGCTGCCACACCTGCCGGAAAAAAGTGGGGCTCACAGGTGAGACTGGGcacagggtgggggggcaaGGAGAGACAGGTGGGTCTGGGTACGAGTGCAGAGAAGTGGAGATGGGTGTGGTTACAGGGTTTGACTGTCGCTGTGGCAACCTGTTCTGCGCCATCCATCGCTACTCTGACAAACACGACTGTCCCTACGACTACCGCACCGAGGCGGCCGAGAAGATCCGCAAGGAGAACCCCATCGTGGTGGCCGAGAAGATCCAGAAGTTgtgagggaggagggagggctTGCTTTGTTtcgtttatatttttaattttgttttcgtTCCAGAGCGGATTGATTGGTGTTCAAATCCGATGAGGaaactttctctctttctcccccatCCCTCTTGcatttctctccccctctctccctccctctctgttgGAGCGTGGCTGTAACTTGTGGTGACTTTGTGGTTTCTGTGGAGACTGGACAAAACCAACACAGACCCCTCCCCAGCCTCCaactcctcctcttctcttccttCTCAAGGAGGGACAGTGTGAGAATGACTGACTGTGAATGGTGTGTTGACTCTGCTTGCTttgaggagaggaggaggataGAGGGAATAAGAAAGGGAGTGGGGGGTTTTAATGGGAAACAAAACGATTGAAAATCTTTGGGGGAGGTAGCTTttattcccttttttcttttggagtGTTCTGGTGTGAatgttcatttttataaatgggACCCCCTTTGTCCCTGTGAACACTGTTTGAATCCCTGAATGCTTGTGCTATATGGTTAagaggtatgtgtgtgtggggtggggtggggtgtgggggtCTCCTGAATGTGTCTGCTCTAAGGAGGATTTGGTTGATGTAGAGACTGGGAGTTTTCATGTTCAGAGCCGCCCTCTGGGCAGGAGTGGCATGGCTGCCCTGATTTGGTGTCAGCTGTGGGATACTCTGTTTATCCTTCCTCACTCTGGAAGCCTCCCCTGGCTTTTTATCAACCCAAACGAGTGATTCTGTAACCCTACTCCTGGCCCAGCTCAGTGGCTCCAAGCCCAGGTCCTGCAAGGCTCCCCCCACTGTTCCTCACTGTGTGTTGAGGGGAGTGTGTTTAGTCATTTAGTGTTTAATTGGGACTAAAACCCACAGACGCAGAACCTGTGCCTCAGAGCAAGGCCTCAACAGGCACCGGTCTGGTACCAGTACAGTTCTTTGGTCCAGCTAGCTCTAACATTGTagaatcaaacaaaatgtactaatCAAGAAAGTAGCTGACTGGCTGGACCAAAATCCTGCACAGGATTTTGACTGGAAGAGCCAGAGATGGAGCTGCaggatttttttccttttaaccagtttttaatgttaatattaaattattaaactcctagtctctctctctctctttctattattattattttttttttctttcaatttgacAAAACTAATTGTTGTGAGCATGTGCAGGTGTTGTAAAATGGAAAGGCGGGGGTCGGGAGGGAGGGTTGGGGTTTCAGGATAACGGGGTGACTGA

Function

GO:

id name namespace
GO:0005488 binding molecular_function

KEGG:

id description
K24687 ZFAND5_6; AN1-type zinc finger protein 5/6

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005824 True 2185 mRNA 0.53 6 10391215 10394151

Neighbor

gene id symbol gene type direction distance location
AMCG00005825 LOC106584389,LOC105895145 coding downstream 3818 10384783 ~ 10387397 (-)
AMCG00005848 NA coding downstream 13537 10374423 ~ 10377678 (-)
AMCG00005849 LOC107676965 coding downstream 20834 10355036 ~ 10370381 (-)
AMCG00005932 NA coding downstream 119691 10229868 ~ 10271524 (-)
AMCG00005930 NA coding downstream 194333 10187612 ~ 10196882 (-)
AMCG00005822 NA coding upstream 44143 10438294 ~ 10454640 (-)
AMCG00005823 NA coding upstream 76018 10470169 ~ 10478589 (-)
AMCG00005860 sh3gl1,LOC103358795,LOC102230617,LOC104918435 coding upstream 95727 10489878 ~ 10502682 (-)
AMCG00005861 LOC108230546,LOC102305552,LOC100698652,LOC101481066,LOC102203928 coding upstream 114506 10508657 ~ 10519618 (-)
AMCG00005859 NA coding upstream 131995 10526146 ~ 10540046 (-)
G154400 NA non-coding downstream 246284 10144483 ~ 10144931 (-)
G154399 NA non-coding downstream 252290 10137428 ~ 10138925 (-)
G154391 NA non-coding downstream 299599 10089554 ~ 10091616 (-)
G154280 NA non-coding downstream 818307 9572215 ~ 9572908 (-)
G154260 NA non-coding downstream 953316 9435880 ~ 9437899 (-)
G154575 NA non-coding upstream 181819 10575970 ~ 10576502 (-)
G154642 NA non-coding upstream 295997 10690148 ~ 10693965 (-)
G154675 NA non-coding upstream 408413 10802564 ~ 10818716 (-)
G154715 NA non-coding upstream 585407 10979558 ~ 10983480 (-)
G154723 NA non-coding upstream 603626 10997777 ~ 10999382 (-)
AMCG00005850 NA other downstream 38433 10295599 ~ 10352782 (-)
G154250 NA other downstream 956275 9425290 ~ 9434940 (-)
G154142 NA other downstream 1298642 9090422 ~ 9092573 (-)
G153806 NA other downstream 2266530 8091748 ~ 8124685 (-)
AMCG00005704 NA other downstream 2389810 7999336 ~ 8001405 (-)
AMCG00005862 NA other upstream 149383 10543534 ~ 10551355 (-)
AMCG00005839 LOC103367321,LOC107729686,LOC103398303 other upstream 344393 10738544 ~ 10752114 (-)
G154677 ef2,eef2,LOC106613766,LOC101482186,LOC107384141,LOC108427162,LOC108414462,LOC102796634 other upstream 449690 10843841 ~ 10912745 (-)
AMCG00005831 shdb,LOC107719565,LOC107676987,LOC107729709,LOC103027120,LOC106584413,LOC108439278 other upstream 455364 10849515 ~ 10865796 (-)
AMCG00005876 oaz1,oaz1s other upstream 926109 11320260 ~ 11325068 (-)

Expression


Co-expression Network