AMCG00005835 (LOC107586405)


Basic Information

Item Value
gene id AMCG00005835
gene name LOC107586405
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 10679937 ~ 10714707 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005835
ATGGCCCTGGGGCTCGCTGAGGGGCTGGGCTGGCTCGCTCCTGGGACGTTTGCAGGAGCCCGTATCTCTGTCAGTCTGCAACGTCGCCGCTATGAAAGCCCTCTCTCTGCCCGAAACTGGGCTGTGGCAGCGAGTGATATCCATGCGGTGAGAGCAGGGGAAGTTGAAATGGAGGCCAGTGGGAACGAGCGCGGGCTAACGAGAGTGTCCTACCGCATCGCTCGGCCTGGGACACTGCTGCTCTGCACGGGCGAGAGTGGGAAGAGCACCTTCATCAAGCAGATGCGCATCATCCACGGAGCCGGCTACACGGACGAGGACAAGCGCGGCTTCACCAAGCTGGTGTACCAGAACATCTTCACCGCCATGCAGTCCATGATCCGTGCCATGGAAACCCTGAAGATCCAGTACAAGTACGAGCAGAACAAGTCCAACGCTCTGCTGGTGCGCGAGGTGGACGTGGAGAAGGTGTGCAGTTTTGAGCAGCCCTACATCAACGCAATAAAGATGCTGTGGACGGACCCGGGCATCCAGGAGTGCTATGACCGCCGGAGGGAGTACCAGCTGTCCGACTCCACCAAATATTACCTTAGTGATTTAGAACGCATAGCCGTGCCGCATTATGTGCCCACCCTGCAGGACGTGTTGCGGGTTCGAGTGCCCACTACTGGCATCATTGAGTACCCCTTTGATCTGGAGAATATTATCTTCAGCTATCTAAGCGATCTGGATCGCATTGCGGACCCTTCCTATCTGCCCACTCAACAGGATGTGCTTAGAGTTCGAATTCCCACCACGGGCATCATTGAGTACCCTTTCGACCTGCAGAGCATCATTTTCAGGATGGTGGACGTGGGGGGGCAGCGATCAGAGCGCAGGAAGTGGATCCACTGCTTCGAGAACGTCACCTCCATCATGTTCCTGGTGGCGCTCAGCGAGTACGACCAGGTGCTGGTGGAGTCCGACAACGAGAACCGGATGGAGGAGAGCAAGGCCCTGTTCAGGACGATAATCACATATCCTTGGTTCCAAAACTCCTCCGTCATCCTGTTCCTGAACAAGAAGGACCTGCTGGAGGAGAAGATCCTTTACTCGCACCTGGTCGACTACTTCCCCGAGTTTGACGGCCCTCAGCGAGACGCGCAGGCGGCCCGGGAGTTCATCCTGAAGATGTTCGTGGACCTGAACCCCGACAGCGACAAGATCATCTACTCGCACTTCACCTGCGCCACCGACACGGAGAACATCCGCTTTGTGTTCGCCGCCGTCAAAGACACCATCCTGCAGCTCAACCTGAAGGAATTACAGTTATAG
>TU194697
ggataaaatcTTCGCCTCCATCTTTTTCTCCATTTTGATGTGCTGTCCTGCCCCTTCGGGTTGCTCATGCATTACCATAGCACTGAGGCTGCCACAGGCTATCCATTATTGAAGTTTCATACAATTTACTTGCTGTACTTATGTTTGCAGATTACAGTTATAGAGGTAATGAGCGAGGTCATGATATAAATAATAGTGTGCATCTTCTGTTTTTGTGCCGAGTAACTTGTTAAAAAGTTCTTGGGGAATCTGTAATCTAGTGTGTGAGGAGGACGGGCTGTGTGTGTCGATCgtctgtttcttcatttttatttttattttttttccatcggGTGGCATGGTTTAGGACGATTTAAcagtgattttaaaaagaaactaaataaagaaatagttttatttatcttatttatgGACCAGATTTTATAgatgtcgttttgtttttttcttccctttttatcGTTTTGTTTCCTTCCTGATGAGTTTTGCGCTCATCTCTCTCCCTGGGGGGACAGTAGGTCTGTTCTGCTGTAAGAAATTCATAAACGCACGCAGGCGCATTGTTTTAGGCACGCAATGAGCTGTCACTCCGGTTCACTCGGTTGCTGCCGTGTTCGACTGAAGTGGCCGTCAAGACACTTTATGCATCACTTGATTCTTCTTTGGTTCGGTTTCTTcaatgatggaaaaaaaaaattctttaTAAAAATTTTTAGGAGCAGTGCTTTATGCAAAAATAGGAAATTCTACAATCTATATTAAGGAGCGATCAGTGGTTGAAAATTGTCTGGTGcgtgcttttctttattttgttgtaccTCTCGTTGTGGTCCTTTGGCTTGTCCTGGCTTAGTGACACTAGAAGCTGCGGAGCCGTGctgcggggtggggggggtttctGCAGTACGGTCGGGTCAGTTTCACGCATTCTCATCACAAGGGCTAATGAACTCTTAACATTTATTACAGGCTTCTATAGATAGTGTAGTGCGAGAGAgttttaatgtgcatttttgcAGGGCTGGGAGTGAGGACCggagatggggtgggggggtttgcATCAGACGACGCAAAAATGGAGAGCGGGGCGCGGCTCGAGTGCGGGTTCAGCACGGACATGTGTACAGGGGGGCCCCGGCGGCGCAGCACAGAGCCCCTGCTCCAGCACAGCGGGGAGCAGTACCAATACAGCGAACACATGAACACCACCTCTCGCCCTGTGAgtgaacagagagagagcgatagagagagagcgcatgtTCTTCTGAGCCGAGTCCCCCAGAGCTACCCCCACCGCTAAAAACCCAAACTACAAGCCCCAAACAACGACTATCTGCATGCCGTCGTCTCTGTACCCGCCGGTCACTGTCCTGTCCTGCCCGCACACTACTTGGCCCAGGCTGGGTCAGAGGTAGAGGGGCACCAGGGGCTCTGAGGGGCCGCTGCTGGCGCCAGTCTCATCTTTTGCTGTTCtcggagggagaggaggaacagggtggtggtggtggtggtgtttccCTCTTCTTGTTGAGCCTCTTGAATTAGTGCCAATACCTGATAAGTATTTGAAAAGCCGCAGTATCCTCCCGTCTGGAGACGCTGGGCGGCCGGGGCCCTCTGCACTGTCGCACTGTTGGATCTACTGTATCAGTATGGGGATATTAAGTATTATAGTGATTTGTCACAGCTGGACGGGGTTGGGGGGGTTACTGTAGTGCCACCAGATCATTTAGAGTTCCTGGGAGCTGCCGCCTGTTGCAAAAACAAAGCTGCAAGGATGTTTCTGATCCACGACGGACCGAGAACACGGGTTCGACAGACTAAATTCTggagaaattaaatgttttttgtggtgTGGGTTGAGCCAGCAGGCGCAGAATCGCTCAACAGCTGCTAATAACTGGCCTGTGACCCTGAGAAGGCAGCTGCCTTCAACTCGTCCTCGCGCTCCGAAACACTCCATGGCATTGGGGGTCTGCGGCCCCCACTGTGTCCACACCTacagaaccaaacaaaaaattaGGAAAAGggtccatttttatttttatggtttgttttcccCACTCCTCCAACACCTAAATCTAACATCTATGGCTGACACTGCTGGCCATCTTAAAATGAGAACCCAAACGGCGCTGACCCCGCCGTGTCACCTTGTCTCTCCTGCGTGGCAGCGCTGCCGCGGCGCCACGTGCCGATTGGTGGGCCGGAGTCCTTCAGTGCAGACCAGGGTGCTGCTCCAAGTGTTTGTTAATTGAGGAGAAGCGTTTGTAAtgataaaggctgctgctgttCGTTAAGGAGTCCCTTGGAGTCTTTGAGTCGTAtggctgtgtctgtgcattGGGTTTCAGGATCTTATTTGTGCTGGTTTGCGGACAGCAGCTCCGTCGGCCCGTCTCTTGGCCGGTGAGGAGCGGTCTGACTTCTCTCTGAGGCGCTGGGGGCATGGGGGGTCAGCGATGAGCGCAGGAGGCGTGAGTGGCAGCGGACTGGGAGGTGTGGTGCCAGCCTCTCCGGCTGCTGCGCTCTGAGACAAAGCCGCACCGCACTTACAGATGGTGCAGGTAATGGATATAACCCCACACCTGTGTACGCAGGGTTTGTGCATGTGGCACTGTGATAGCACTGGCGGACAGTGGggatacatttgtatttatttgtaaactcGGAGGCATCGGTGGGGTGTGAGTTTTGAGTGTTATCTTCCTCGGCGGAAAGCAAAATATTACAGATAAATTAGATGAGTCAGCGCAGAaccagtgcNNcccccccccccccacccacctcaCCCTCTGCAACAATGGAATGAAGCATTGTAATCTTTTGGAGCTTTGTAAAGGTCTTTTTTGACTTCTCttattttgtgttgtatgtAATACCTTCAGTGTGTAACTTggcaaaaatgtatgtttgtgttatgGAAACCAATACTATAGCttggtttaaaaaaaggaaaaaacaagaaaaaaaaacgaaaaaaaacaaaaaaacgatgacaaaaaaacaaataaatgaataattaaaaaaaaaactgaaacatttactataaatgaatgaaaatttCTGCAGTAAGGAAGTATTTATGGTGCCTTACAAATAAAATTCAATGGAGGTCAGATCCCGGGTCTGTGTGCTTATTATGATCGTTGTTATTTATAATGGTGTTatttccctcctcctctg
>TU194699
ggataaaatcTTCGCCTCCATCTTTTTCTCCATTTTGATGTGCTGTCCTGCCCCTTCGGGTTGCTCATGCATTACCATAGCACTGAGGCTGCCACAGGCTATCCATTATTGAAGTTTCATACAATTTACTTGCTGTACTTATGTTTGCAGATTACAGTTATAGAGGTAATGAGCGAGGTCATGATATAAATAATAGTGTGCATCTTCTGTTTTTGTGCCGAGTAACTTGTTAAAAAGTTCTTGGGGAATCTGTAATCTAGTGTGTGAGGAGGACGGGCTGTGTGTGTCGATCgtctgtttcttcatttttatttttattttttttccatcggGTGGCATGGTTTAGGACGATTTAAcagtgattttaaaaagaaactaaataaagaaatagttttatttatcttatttatgGACCAGATTTTATAgatgtcgttttgtttttttcttccctttttatcGTTTTGTTTCCTTCCTGATGAGTTTTGCGCTCATCTCTCTCCCTGGGGGGACAGTAGGTCTGTTCTGCTGTAAGAAATTCATAAACGCACGCAGGCGCATTGTTTTAGGCACGCAATGAGCTGTCACTCCGGTTCACTCGGTTGCTGCCGTGTTCGACTGAAGTGGCCGTCAAGACACTTTATGCATCACTTGATTCTTCTTTGGTTCGGTTTCTTcaatgatggaaaaaaaaaattctttaTAAAAATTTTTAGGAGCAGTGCTTTATGCAAAAATAGGAAATTCTACAATCTATATTAAGGAGCGATCAGTGGTTGAAAATTGTCTGGTGcgtgcttttctttattttgttgtaccTCTCGTTGTGGTCCTTTGGCTTGTCCTGGCTTAGTGACACTAGAAGCTGCGGAGCCGTGctgcggggtggggggggtttctGCAGTACGGTCGGGTCAGTTTCACGCATTCTCATCACAAGGGCTAATGAACTCTTAACATTTATTACAGGCTTCTATAGATAGTGTAGTGCGAGAGAgttttaatgtgcatttttgcAGGGCTGGGAGTGAGGACCggagatggggtgggggggtttgcATCAGACGACGCAAAAATGGAGAGCGGGGCGCGGCTCGAGTGCGGGTTCAGCACGGACATGTGTACAGGGGGGCCCCGGCGGCGCAGCACAGAGCCCCTGCTCCAGCACAGCGGGGAGCAGTACCAATACAGCGAACACATGAACACCACCTCTCGCCCTGTGAgtgaacagagagagagcgatagagagagagcgcatgtTCTTCTGAGCCGAGTCCCCCAGAGCTACCCCCACCGCTAAAAACCCAAACTACAAGCCCCAAACAACGACTATCTGCATGCCGTCGTCTCTGTACCCGCCGGTCACTGTCCTGTCCTGCCCGCACACTACTTGGCCCAGGCTGGGTCAGAGGTAGAGGGGCACCAGGGGCTCTGAGGGGCCGCTGCTGGCGCCAGTCTCATCTTTTGCTGTTCtcggagggagaggaggaacagggtggtggtggtggtggtgtttccCTCTTCTTGTTGAGCCTCTTGAATTAGTGCCAATACCTGATAAGTATTTGAAAAGCCGCAGTATCCTCCCGTCTGGAGACGCTGGGCGGCCGGGGCCCTCTGCACTGTCGCACTGTTGGATCTACTGTATCAGTATGGGGATATTAAGTATTATAGTGATTTGTCACAGCTGGACGGGGTTGGGGGGGTTACTGTAGTGCCACCAGATCATTTAGAGTTCCTGGGAGCTGCCGCCTGTTGCAAAAACAAAGCTGCAAGGATGTTTCTGATCCACGACGGACCGAGAACACGGGTTCGACAGACTAAATTCTggagaaattaaatgttttttgtggtgTGGGTTGAGCCAGCAGGCGCAGAATCGCTCAACAGCTGCTAATAACTGGCCTGTGACCCTGAGAAGGCAGCTGCCTTCAACTCGTCCTCGCGCTCCGAAACACTCCATGGCATTGGGGGTCTGCGGCCCCCACTGTGTCCACACCTacagaaccaaacaaaaaattaGGAAAAGggtccatttttatttttatggtttgttttcccCACTCCTCCAACACCTAAATCTAACATCTATGGCTGACACTGCTGGCCATCTTAAAATGAGAACCCAAACGGCGCTGACCCCGCCGTGTCACCTTGTCTCTCCTGCGTGGCAGCGCTGCCGCGGCGCCACGTGCCGATTGGTGGGCCGGAGTCCTTCAGTGCAGACCAGGGTGCTGCTCCAAGTGTTTGTTAATTGAGGAGAAGCGTTTGTAAtgataaaggctgctgctgttCGTTAAGGAGTCCCTTGGAGTCTTTGAGTCGTAtggctgtgtctgtgcattGGGTTTCAGGATCTTATTTGTGCTGGTTTGCGGACAGCAGCTCCGTCGGCCCGTCTCTTGGCCGGTGAGGAGCGGTCTGACTTCTCTCTGAGGCGCTGGGGGCATGGGGGGTCAGCGATGAGCGCAGGAGGCGTGAGTGGCAGCGGACTGGGAGGTGTGGTGCCAGCCTCTCCGGCTGCTGCGCTCTGAGACAAAGCCGCACCGCACTTACAGATGGTGCAGGTAATGGATATAACCCCACACCTGTGTACGCAGGGTTTGTGCATGTGGCACTGTGATAGCACTGGCGGACAGTGGggatacatttgtatttatttgtaaactcGGAGGCATCGGTGGGGTGTGAGTTTTGAGTGTTATCTTCCTCGGCGGAAAGCAAAATATTACAGATAAATTAGATGAGTCAGCGCAGAaccagtgcccccccccccggctcCTTGGTGCCCCCCCTGTCCGTGCTCAACCTGCAGGAGAGCACGAGTTAGGTTCACTCATCCGCCGGTCATCCGATCACAGCTGTACATCACAGGTACTGGGCCGGGTGGTGCGATGCTGTGCTGGGCATCCATGACAGTGCAGCGGATGTAGAGTAATTTAaacttactttttattttatttttattttaatttattttcttcctgtttttttttttgttttttttaaatgaatgccgATACATGACCTAAACACTATTGTTTTTAGAAtctcttaatatatatataattacacacacatatacatatacaaacacaagGTGATTAAAAAATTGTGTAGTGATGTACAAATTTCAAGTCatgtattttttggttgttgttttctaagTATACCAAATGTAAATGATGTACTATAATACGTGTGCCAACCCCCTCCCTGTGGCTCAACCCCTTTCAGGTGCCAACGTTGTGAATCATTAGGCGGACCTCTGTATTTCTGGGtccagtttttaaaacaaatgaacactaaataaagaaataaaaaggacaactttattctgtatttaagaTTAAAGAAGAAAACTGCTGTTTTTAAGAGATTGTGTCATTTAATTGCATGTACTGTTTGTGTGGACGGGGGGAGGGAGACGGTGTTACTGCTAAACCCCATCAGAGGGTCTGAATGGTTAttgatttacagtatttttagccacacacattttatatatatacatatgcttctatatgtgtatatataattttatttttattttgtatttgtttcatttcaacCACTGTTGCCTGGACctcattaaaacatgaaaatgatttTCATAGCCTTCTCCTAAAAaagaagaataattaaaaagatgaaaaatacaaaaatacaaaaaaaaatatatacaaaaaaaaatacaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005835 False 1314 mRNA 0.57 10 10679937 10690305
TU194697 False 3183 lncRNA 0.48 2 10690143 10714707
TU194699 True 3696 lncRNA 0.46 2 10690143 10693953

Neighbor

gene id symbol gene type direction distance location
AMCG00005803 NA coding upstream 46505 10626449 ~ 10633432 (+)
AMCG00005804 LOC106613805,LOC101170792,LOC103364385 coding upstream 56928 10615882 ~ 10623009 (+)
AMCG00005857 NA coding upstream 156106 10520856 ~ 10523831 (+)
AMCG00005856 NA coding upstream 172645 10503578 ~ 10507292 (+)
AMCG00005858 NA coding upstream 177115 10502507 ~ 10502822 (+)
AMCG00005833 NA coding downstream 130829 10845536 ~ 10846858 (+)
AMCG00005826 sirt6,LOC107667852 coding downstream 167912 10882619 ~ 10886247 (+)
AMCG00005867 eef2b,ef2,LOC106613766,LOC107552698 coding downstream 191650 10906357 ~ 10912672 (+)
AMCG00005868 NA coding downstream 205241 10919948 ~ 10923547 (+)
AMCG00005869 unc13a coding downstream 215087 10929794 ~ 10962687 (+)
G154583 NA non-coding upstream 11676 10667998 ~ 10668261 (+)
G154574 NA non-coding upstream 103500 10575979 ~ 10576437 (+)
G154505 NA non-coding upstream 153885 10523967 ~ 10526052 (+)
G154473 NA non-coding upstream 190083 10419906 ~ 10489854 (+)
G154447 NA non-coding upstream 347843 10285514 ~ 10332094 (+)
G154722 NA non-coding downstream 282942 10997649 ~ 10999389 (+)
G154775 NA non-coding downstream 459688 11174395 ~ 11180237 (+)
G154815 dot1l non-coding downstream 647298 11362005 ~ 11362233 (+)
G154816 NA non-coding downstream 655717 11370424 ~ 11370912 (+)
G154831 NA non-coding downstream 664073 11378780 ~ 11379289 (+)
G154499 NA other upstream 163547 10512504 ~ 10516390 (+)
G154486 NA other upstream 208306 10470543 ~ 10471631 (+)
AMCG00005821 NA other upstream 210531 10462537 ~ 10469406 (+)
AMCG00005929 NA other upstream 323693 10267273 ~ 10356244 (+)
AMCG00005851 NA other upstream 375028 10297889 ~ 10304909 (+)
AMCG00005834 LOC108271164,LOC108430094,LOC107393192,LOC107719559,LOC107699414 other downstream 7045 10721752 ~ 10736626 (+)
G154636 LOC108435919,LOC108271001 other downstream 198690 10913397 ~ 10915729 (+)
AMCG00005840 LOC100304646,LOC107384145 other downstream 292091 11006798 ~ 11010354 (+)
G154756 NA other downstream 368454 11083161 ~ 11086011 (+)
G154798 NA other downstream 605257 11319964 ~ 11361770 (+)

Expression


Co-expression Network