AMCG00005845


Basic Information

Item Value
gene id AMCG00005845
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 11064028 ~ 11077614 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005845
ATGAAATCTGGCGCGTTTCTTTCCCGAGTTCAGGCCCCTTGGGGGGCCCCGAAACCAGCCCACCTTGTGCTGCTGCACCTGTGCTCGTTAGCGCAGATCACTCAGGTCAGGAACCACAGTGCCCAGGTGAGGGCCGATGGCTGGGCGTCTCTTGGAAGTGCCCGTCAGAGGGGTTTGACTGGCGGTGCAGTGAATGCCGTGAGGGACGCAGTGGTGGTGGGGAAGGGTGTCTCTTACACTCTCCTAAGGGTCCTCATGAAGCAGCGCTCGCACACGCGGGTCGAGTTCAGCTCTGCCATGGATGCGACTTGTCTCCCTCTGTGGAAGGAGCTGCTCAGGGTGTCATCTGTCCTGGCTCTCGCCCGGAGGCTGCACACTCCTGACCCTGCCACCGGGGGAATCAGACGCCACGTTTCCCAAGACCACTGGGCCAAGAGCAAAGGGGTCCGacagacagacggacggacagacaACGGCAGGACGGACACGCGGGGGGCTGCGATTGGCGGCTCGGCGACAGGCTGGTGGAAGATGTCGTCGGGCGCCGGcggggggggggcggcggcggcggtggCGGTGGCGGAGGGGCCCGTGGGCATCCCCTTCCCGGAGTACAGCGCGGACGTGCTGGGGGGACTGAACGAGCAGCGGCTGAGTGGACAGTTGTGCGACGTGCTGCTGGTGACGCAGGGCCGCGAGTTCCCTGCCCACCGTTCAGTGCTCGCCGCCTGCAGCTCCTACTTCCACAAGCTCTTCACCTCGGGCGCCGCCGCCGACCGCCAGAGCGTGTACACCATTGACTTCGTGTGCGCCGAGGCCCTGGCTGCACTGCTGGACTTCGCCTACACAGCCACGCTCACCGTGAGCCGTGCCAGCGTGGCCGATGTCCTGAGTGCCGCCCGGCTGCTGGAGATCACCCCCGTCCGCGACGTCTGCGCACACCTGCTGGACACGAAAGTGCTCTCCCCTCCGGTGGGGAGTGAGCGGCCcaaggaggagcaggaggacgaggaagaggagCGTCTGAAGGGAGGGGAGCACAGCGACCCGGTGGACCAGGGGAACCGGTTGCGGGCCCGTGAATACCTAGAGTTCTTCCTGAGCCGCGGGTCCCActggagcagcagctgcagcaccCCCGAGCTCAGGGACCTGCAGCCGCACCTGCACTTTAGCCAGCGCAACGGAGCCGGGGGCGCGGAGAGCAACGGCCTGGCCGCCACAGCCGGCACCAGCGGATACTACTCCCCGCTCACCCTCGCGCTGGGCCAGACTCCCTCCCTCGGCCTCGCGGAccaggacgaggacgaggacgacGAGGACGGGGATGACGAGAGGAGCCGGGGGGCCAGGGCGCAGGCCGAGGCGGAGGCTGGGGAGATGCTGGCCTGGATGGAGGCCAGAGGTAACGGAGGGGCTGCGGTCCCGGCTTTCTACGGCCCCTCTCAGAACGGACATTTCTACCTCCCGCGCGACGCCAAACTGGAGCGAGAGGTGGAGCAGGAGATGGAGCTGGAGCACGAGCGCaagcaggagcaggagcaggagcaggagcaggatgGGCTCTCGGCCAGTGCTCTCCTCCAGAAAATGATGGACTCTTTCGAGCGACAGAAGGAGCGAGTGGCGGCGGGTGAGGATATGGACGGCGAGGAGCACGACATGGAGTTTTACTTGAATTACTTTAACAGCACGCAACACGACGATGCGGCCGTGGCTCAGGGCCTGCTGCCCATCTGGGCACAACGCGGGGTCGGGGCTGCGGGCAGTGGGGGGGGCGGCGAGAAGAAGATGCGGTCCAAGGCCTTCCAGAAGTGCCCGATCTGCTCAAAGGTGATCCAGGGTGCGGGGAAGCTGCCCAGACACATCCGCACGCACACTGGGGAGAAGCCCTATGAGTGCGCCATCTGCAAAGTGCGCTTTACCAGCAGGGAGCGCTCTGCCCCTCCCTGGGGAGCCCCAGCCCTAGTGCAGAATGCTCACTGTGCAGCTGAAACAGGCACCCTGAGCTCTGTCTGCTCTGTGGACATGAAAGGGCCCCGGGCAGCTGTTCAGGAGAACCAGTGA

Function

GO: NA

KEGG:

id description
K10494 ZBTB7; zinc finger and BTB domain-containing protein 7

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005845 True 2067 mRNA 0.66 7 11064028 11077614

Neighbor

gene id symbol gene type direction distance location
AMCG00005843 NA coding downstream 32944 11013677 ~ 11031084 (-)
AMCG00005842 mbd3,LOC106613771,LOC105011554,LOC108430109,LOC101480296,LOC103354193,LOC104920733 coding downstream 69707 10988152 ~ 10994321 (-)
AMCG00005841 NA coding downstream 77804 10982585 ~ 10986224 (-)
AMCG00005846 LOC108230728,LOC100701936,LOC102800276,LOC102208033,LOC101482435,LOC106613769,LOC104940954 coding downstream 81590 10976242 ~ 10982438 (-)
AMCG00005847 NA coding downstream 87886 10975406 ~ 10976142 (-)
AMCG00005814 map2k2 coding upstream 4884 11082498 ~ 11093542 (-)
AMCG00005852 NA coding upstream 103320 11180934 ~ 11190305 (-)
AMCG00005855 LOC108427150,LOC107696585,LOC108280165,LOC107552683,LOC107724989,LOC107549819,LOC100151059 coding upstream 185460 11263074 ~ 11266410 (-)
AMCG00005878 NA coding upstream 221998 11299612 ~ 11306670 (-)
AMCG00005882 NA coding upstream 254158 11331772 ~ 11334954 (-)
G154723 NA non-coding downstream 64646 10997777 ~ 10999382 (-)
G154715 NA non-coding downstream 80548 10979558 ~ 10983480 (-)
G154675 NA non-coding downstream 245312 10802564 ~ 10818716 (-)
G154642 NA non-coding downstream 370063 10690148 ~ 10693965 (-)
G154575 NA non-coding downstream 487526 10575970 ~ 10576502 (-)
G154782 NA non-coding upstream 129417 11207031 ~ 11208176 (-)
G154791 NA non-coding upstream 206514 11284128 ~ 11284398 (-)
G154817 NA non-coding upstream 232084 11309698 ~ 11319984 (-)
G154848 NA non-coding upstream 338203 11415817 ~ 11416388 (-)
G154906 NA non-coding upstream 491659 11569273 ~ 11613611 (-)
G154677 ef2,eef2,LOC106613766,LOC101482186,LOC107384141,LOC108427162,LOC108414462,LOC102796634 other downstream 151283 10843841 ~ 10912745 (-)
AMCG00005831 shdb,LOC107719565,LOC107676987,LOC107729709,LOC103027120,LOC106584413,LOC108439278 other downstream 198232 10849515 ~ 10865796 (-)
AMCG00005839 LOC103367321,LOC107729686,LOC103398303 other downstream 311914 10738544 ~ 10752114 (-)
AMCG00005862 NA other downstream 512673 10543534 ~ 10551355 (-)
AMCG00005850 NA other downstream 711246 10295599 ~ 10352782 (-)
AMCG00005876 oaz1,oaz1s other upstream 242646 11320260 ~ 11325068 (-)
AMCG00005877 sf3a2 other upstream 258981 11336595 ~ 11339135 (-)
AMCG00005879 dot1l,LOC106920479 other upstream 271631 11349245 ~ 11360874 (-)
AMCG00005875 NA other upstream 296861 11374475 ~ 11376538 (-)
AMCG00005989 NA other upstream 1591642 12669256 ~ 12675994 (-)

Expression


Co-expression Network