AMCG00005850


Basic Information

Item Value
gene id AMCG00005850
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 10295599 ~ 10352782 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005850
ggtgCATCAGATATAGATGTGTACAGTGTGAAGGTGGACTGTAAGGTGACCTCTCGCTTCGCCCACAATGTGATAACCAGTCGAGCAGTCAACCGAGGCAATGTTTCACATGAGGTCTTGGTGATTGATGGAGTGACGTACCTGGGCCAGGTGAAGGAGAAAGAGCAGGCCAAGCAGCAGTACCAGAAGGCTGTGAGCCAGGGACAGACCGCCGGACTGGTCAAGGCATCTGGCCGCAACATGGAGAAGTTCTCGGTGTCAGTGAACATCGCGGCGGCCAGCAAAGTGACCTTCCAGCTGACCTatgaggagctgctgcagaggcacATGGGGCAGTACGAGATGATGATCCGGGTCCAACTCAAGCAAGTGGTCCAGCACTTTGAGaTCGTCATAGACGTGTGTGAACCCCAGGGCATCGCCTTCCTGAACGCTAACGGAACCTTCATCTCCAATGAACTGCTCCCCCTGGTGGAGAAGACAGTCAGTGAGAACACGGCTCACGTGTCGTTCTCCCCCACCGTGGAGCAGCAGCGCAGCTGTGTGGGTTGCACCTCCACCCTTATTGACGGAGACTTCTTCATCACCTACGAtgtcaagagagagagagacgctgGGGAGATCCAGATAATGAATGGTTATTTTGTGCACCATTTCGCTCCGAGCGATTTACAACGTGTGAGGAAGAATGTGGTGTTTGTCATCGATGAAAGTGGCTCTATGCATGGGACAAAGATCCGGCAGACCCGTGAAGCTCTTAACGCCATCCTGAGCCAAATCCACGTGGACGACTACTATGCTCTCCTTGTGTTCGACCACGGCTTCCGAACGTGGCGACCCTCGCTGAGCCCGGCCACGCCCAAGAACATCGCAGAGGCCAAGGAGTTTCTGTCCTTCCTGGAGAAGATGGCGGCGGAGAACAACGGTGTGGCACGCAGGATCTATGAGGACTCGGACGCGGCGATACAGCTGCagGGCTTCTACAATGAAGTGGCCAACCCCCTGCTGTCTGACATTGAGCTGCAGTACCCCGAGAATGCAGTGGACTCCCTGACAGACAACACCTTCAAACAGCTTTACAATGGCTCTGAGATTGTGGTGGCTGGACACATCTCCGACAACGACCTGGACAACTTCCTGGCGGAGGTCAAGGCACAGGGGGCAGTGCAGGAACTACAGCTGCAGGCCCAGGCCAGTGTGCAGGACTCACAGAAAGCCTTCAGGAACCAGTGCTACATCTTCGGGGAGTTCACAGAGCGCCTGGGCAGCGGCTCTCCAGAGGAGAGAGCGAACAAGACGGCACGCGCCCTGGAGCTGTCCCTCAAGTACAGCTTTGTCACGCCGCTCACCTCCATGGTCGTCGCCAAACCACCCAAGGACAACAGGGATGACCTGATGCTTGCCGACAAGCTGACCGAAGGCACGGTGGTGAATGGGGAGACCATCGCGGACAAGCACCCAGACCCCAGCGGCAGGGTGGGCACCTACTTCTGGCGCTTCGGCATCGTGAAGGAGAAAGAGCAGGCCAAGCAGCAGTATCAGCAGGCTGTGTGGCAGAGACAGACCGCCGGGCTGGTCAACAAAGTGACCTTCCAGCTGACCTatgaggagctgctgcagaggcacATGGGGCAGTACGAGATGATGATCCGGGTCCGACCCAAGCAACTGCTCCAGCACTTCGAGAAAGACTTCCGCACAGACGTGAAGAACGGACAGGAAGTTGCCTGTTGGTTTGTCCACAACAATGGGACAGGCCTGATCGATGGAACGCACCGAGACTACATCGTCTCTGTGAACATCGCGGCGGCCAGCAAAGTGACCTTCCAGCTGACCTatgaggagctgctgcagaggcacATGGGACAGTACGAGATGATGATCCGGGCTCACGTGTCATTTTCCCCCACCATGGAGAAGCAGCGCAGTTGTGTCGGCTGCCCCTCCACCCTTATTGACGGAGACTTCTTCATCACCTACGAtgtcaagagagagagagatgctggcGAGATCCAGACCCGTGAGGCCCTTGACGCCATCCTGAGCGAAATCCACATGGACGACTACTTTGCCCTCCTTGTGTTCGACCACGGCTTCCGAACGTGGCGACCCTCGCTGAGCCCAGCCACGCCCAAGAACATCGCAGAGGCCAAGGAGTTTGTGAAGGGTATCAATGCTAGGGGAGTGCGCATGCTGGAGCAGGACAAGGCTGCCGGCCAACTGCCTGATCACAGCGTGTCCATCATCATCCTGCTGACCGACGGGGAACCCGTCTCAGTGGCCAACCCCCTGCTGTCTGACATTGAGCTGCAGTACCCCGAGAATGCAGTGGACTCCCTGACAGACAACACCTTCAAACAGCTTTACAATGGCTCTGAGATTGTGGCAGTGCAGGAGCTACAGCTGCAGGCCCAGGCCAGTGTGCAGGACTCAGAGAAAGTCTTCAGGAACCAGAGCTACATCTTTGGGGAGTTCACAGAGCGCCTGGGCAGCGGCTCACCGGAAGAGAGAGCGAACAAGACGGCACGCGCCCTTGAGCTGTCCCTCAAGTACAGCTTTGTCACGCCGCTCACCTCCATGGTCGTCACCAAACCACCCAAGGACAACAGGGATGACCTGATGCTTGCTGACAAGCTGACTGAAGGTGTGTGGGATAGGGGTCGGGGGAGACTGACTCCCAGATGCCTGGtaaattttaatattgtgtgtctctgtgtgtctgtgcagtggaCAGTGACCCTCACTTCATCGTGCAGCCGCCCAATCAAAACGACACTCTGCACGGTGGTGAATGGGCAGACTATCGCGGACAAGCACCTGGACCCCAGCGGCAGGGTGGGCACCTACTTCTGGCGCTTCGGCATCGCTCACGTGTCGTTTTCCCCCACCATGGAGAAGCAGCGCAGTTGTGTCGGCTGCCCCTCCACCCTTATTGACGGAAACTTCTTCATCACCTACGATGTCAAGAGAGTGAAAGACGCTGGGGACATCCAGaTAGTGAATGGTTATTTTGTGCACCATTTTGCTCCGAGCAATTTACCACGCGTGAGGAAGAACGTGGTTTTTGTCATTGATGAAAGTGGCTCTATGTATGGGACAAAGATCCGCCAGACCCGTGAGGCCCTCGATGCCATCCTGGGCGAAATCTACGTGGACGACTACTTTGCCCTCCTTGTGTTCGACCACGGCTTCCGAAAGTGGCAACCCTCGCTGAGCCCAGCCACGCCCAAGAACATCGCAGAGGCCAAGGAGTTTGTGAAGGGTATTGATGCTAAGGGAGgcacagacatAAACCAGGCGGTGCTGGAGTCAGTGCGCATGCTGGAGCAGGACAAGGCTGCCGGCCGACTGCCTGACCACAGTGTGTCCCTCATCATCCTGTTGACCGACGGGAACCCCGCCTCAGTGGCCAACCCCCTGCTGTCTGACATTGAGCTGCAGTACCCCGAGAATGCAGTGGACTCCCTGACAGACAACACCTTCAAACAGCTTTACAATGGCTCTGAGATTGTGGTGGCTGGACACATCTCCGACAACGACCTGGACAACTTCCTGGTGGAGGTCAAGGCGCAGGGGGCAGTGCAGGAGCTACAGCTGCAGGCCCAGGCCAGTGTGCAGGACTCAGAGAAAGCCTTCAGGAACCAGAGCTACATCTTCGGGGAGTTCACAGAGCGCCTGGGCAGCGGCTCACCGGAAGAGAGAGCGAACAAGACGGCGCGCGCCCTGGAGCTGTCCCTCAAGTACAGCTTTGTCACGCCGCTCACCTCCATGGTCGTCACCAAACCACCCAAGCACAACAGGGATGACCTGATGCTTGCTGACAAGCTGACTGAAGATCAGAGGAATGGAGAGGAAGTTGCCTGTTGGTTTGTCCACAACAATGGGACAGGCCTGATCGATGGGACGCACCAAGACTACATCGTCTCTGGCATCTTCAAGACCAGCTAA
>TU194621
gataaaataaaaATCTCCTGTTCGTTCCTACGTCCACTCTTGTAGGGTCATAGCAGCCCCCCATCTCTCGCCATGTCCAGGCTGCTGCTCCCGCTGCTGCTGTTGGGGCTGTGGCTGCCAGCTGTGACCCCTGCCCACTTGGTGATCCCAGAGGACTCAGGTTTGAAGGCTCTCTCAGACACAGGAGGCAGAATCCTCAAGaagaGGAGCTCTCCTGATGTGggtgCGTCAGATATAGATGTGTACAGTGTGAAGGTGGACTGTAAGGTGACCTCTCACTTCGCCCACAATGTGATGACCAGTCGAGCGGTCAACCGAGGCAATGTTTCCCATGAGGTCTTGTTTGACATGGAGTTGCCAAAGACGGCCTTCATCACCAACTTCAGCATGGTGATTGATGGAGTGACGTACCTGGGCCAGGTGAAGGAGAAAGAGCAGGCCAAGCAGCAGTATCAGCAGGCTGTGTGGCAGAGACAGACCGCCGGGCTGGTCAAGGCATCTGGCCGCAAGATGGAGAAGTTCTCTGTGTCAGTGAACATCGCGGCGGCCAGCAAAGTGACCTTCCAGCTGACCTatgaggagctgctgcagaggcacATGGGGCAGTACGAGATGATGATCCGGGTCCGACCCAAGCAACTGCTCCAGCACTTCGAGatCGTTGTAGACGTGTTTGAACCCCAGGGCATCG
>TU194622
gggagaggaggggaggctGGCTATGTCCCTCCTATATAAATACTGAGCCCACAGTCATTACGCCAGAGCACAGCTCACCAAGCTCTCTCTGGTTCTCCTTTTCTCATCAGATCTCCTGTTCGTTCCTACGTCCACTCTTGTAGGGTCATAGCAGCCCCCCATCTCTCGCCATGTCCAGGCTGCTGCTCCCGCTGCTGCTGTTGGGGCTGTGGCTGCCAGCTGTGACCCCTGCCCACTTGGTGATCCCAGAGGACTCAGGTTTGAAGGCTCTCTCAGACACAGGGGGCAGAATTCTAAAGaagcGGAGCTCTCCTGATGTGggtgCATCAGATATAGATGTGTACAGTGTGAAGGTGGACTGTAAGGTGACCTCTCGCTTCGCCCACAATGTGATAACCAGTCGAGCAGTCAACCGAGGCAATGTTTCACATGAGGTCTTGTTTGACATGGAGTTGCCAAAGACGGCCTTCATCACCAACTTCAGCATGGTGATTGATGGAGTGACGTACCTGGGCCAGGTGAAGGAGAAAGAGCAGGCCAAGCAGCAGTACCAGAAGGCTGTGAGCCAGGGACAGACCGCCGGACTGGTCAAGGCATCTGGCCGCAAGATGGAGAAGTTCTCGGTGTCAGTGAACATCGCGGCGGCCAGCAAAGTGACCTTCCAGCTGACCTatgaggagctgctgcagaggcacATGGGACAGTACGAGATGATGATCCGGGTCCGACCCAAGCAACTGCTCCAGCACTTTGAGatCGTTGTAGACGTGTTTGAACCCCAGGGCATCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005850 True 3948 mRNA 0.57 33 10295599 10344002
TU194621 False 691 TUCP 0.55 8 10315380 10352782
TU194622 False 789 TUCP 0.55 7 10315380 10351719

Neighbor

gene id symbol gene type direction distance location
AMCG00005932 NA coding downstream 24075 10229868 ~ 10271524 (-)
AMCG00005930 NA coding downstream 98717 10187612 ~ 10196882 (-)
AMCG00005931 NA coding downstream 171714 10107257 ~ 10123885 (-)
AMCG00005933 NA coding downstream 196083 10096144 ~ 10099516 (-)
AMCG00005801 NA coding downstream 214390 10069124 ~ 10081209 (-)
AMCG00005849 LOC107676965 coding upstream 2254 10355036 ~ 10370381 (-)
AMCG00005848 NA coding upstream 21641 10374423 ~ 10377678 (-)
AMCG00005825 LOC106584389,LOC105895145 coding upstream 32001 10384783 ~ 10387397 (-)
AMCG00005824 NA coding upstream 38433 10391215 ~ 10394151 (-)
AMCG00005822 NA coding upstream 85512 10438294 ~ 10454640 (-)
G154400 NA non-coding downstream 150668 10144483 ~ 10144931 (-)
G154399 NA non-coding downstream 156674 10137428 ~ 10138925 (-)
G154391 NA non-coding downstream 203983 10089554 ~ 10091616 (-)
G154280 NA non-coding downstream 722691 9572215 ~ 9572908 (-)
G154260 NA non-coding downstream 857700 9435880 ~ 9437899 (-)
G154575 NA non-coding upstream 223188 10575970 ~ 10576502 (-)
G154642 NA non-coding upstream 337366 10690148 ~ 10693965 (-)
G154675 NA non-coding upstream 449782 10802564 ~ 10818716 (-)
G154715 NA non-coding upstream 626776 10979558 ~ 10983480 (-)
G154723 NA non-coding upstream 644995 10997777 ~ 10999382 (-)
G154250 NA other downstream 860659 9425290 ~ 9434940 (-)
G154142 NA other downstream 1203026 9090422 ~ 9092573 (-)
G153806 NA other downstream 2170914 8091748 ~ 8124685 (-)
AMCG00005704 NA other downstream 2294194 7999336 ~ 8001405 (-)
G153733 auts2 other downstream 2507278 7785554 ~ 7788321 (-)
AMCG00005862 NA other upstream 190752 10543534 ~ 10551355 (-)
AMCG00005839 LOC103367321,LOC107729686,LOC103398303 other upstream 385762 10738544 ~ 10752114 (-)
G154677 ef2,eef2,LOC106613766,LOC101482186,LOC107384141,LOC108427162,LOC108414462,LOC102796634 other upstream 491059 10843841 ~ 10912745 (-)
AMCG00005831 shdb,LOC107719565,LOC107676987,LOC107729709,LOC103027120,LOC106584413,LOC108439278 other upstream 496733 10849515 ~ 10865796 (-)
AMCG00005876 oaz1,oaz1s other upstream 967478 11320260 ~ 11325068 (-)

Expression


Co-expression Network