AMCG00005853 (LOC104941186,LOC107581323,LOC107678192)


Basic Information

Item Value
gene id AMCG00005853
gene name LOC104941186,LOC107581323,LOC107678192
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 11242839 ~ 11243798 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005853
ATGGACGGGCCCTTCACCCTGCCGCTGCTGAGTGAGGATGTGCTCTTGCCCGGGGCAGAGCAGCAGTCTGGGTCCTGCCTGGCCGGTGGAGGCAGCATGGGACCCGGGGTCAGCCTGGCGCTGTCGTCTCGCCGCAAGCGGGAGTTCATGCCGGATGAGAAGAAGGACGCCAGCTACTGGGAGAAGCGGCGCAAGAACAACGAGGCGGCCAAGCGCTCGAGGGAGAAGCGGCGCGTCAACGACTTCGTGCTGGAGAGCCGGCTGCTGGCGCTAAGTGAGGAGAACGTCAGACTGCGCGCCGAGCTGCTAGCCCTCAAACTGCGCTTTGGCCTGCTGAGCCCCGCCACCTACGCCTCCCACCAGCACACCCTGCTGCAGCTGCGCTCGCTGCCCCCACCACAGCACAGCCCGCCCTCCCTGGCCGACAGCATGGGCGGGAGGGAGATATACTGGGGCAGGCGGTGCAGCGACTCGGGCTCCAGCCAGGGGGAGGCTGCTCCCGCACCATCACACTCCTACCACGACCCCCCCACCATCCAACGCCGCAACGGCTCTGCCTTCACCCCGACGCGCAGCACGCTGGGAGCGGGATACAATTACAAGTACCCGACGTTCCCatccacccctccccctctgctTCCACCACCGCTGGCTCCTCTTCCCCCACCCCTGCACCCTGCCCCTCGCCGGGCCTCCTCCCCCATGCACTGGCCCTGCCCGCCCCGACCTCAGCTCCACCCAGCCTCGAAAGCGGCCAGCGACGAGGAGGCAGAGCAGCAGGTTCCGGCTCCCTCCGAGGCTGACCCCAAGATGGCCTTGCCACATAAACTGAGGCTGAAGACGCGTGTCCCCCGAGAGAAGGCCGACTCGGACAGCGAGGCAGCCGCGGTGGAGAGGCACAGGGGCAAGGCTGCCGCGTCTCCGACTGAGGCCATAGATAGACTCTGTGTGTCCGACTGA

Function

NR:

description
PREDICTED: nuclear factor interleukin-3-regulated protein-like

GO: NA

KEGG:

id description
K12114 VRI; vrille

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005853 True 960 mRNA 0.68 1 11242839 11243798

Neighbor

gene id symbol gene type direction distance location
AMCG00005854 LOC108270825,LOC105011562,LOC103046807,LOC108438768,LOC102210929,LOC108247476,LOC101470054,LOC105929969 coding upstream 36250 11205387 ~ 11206589 (+)
AMCG00005816 LOC106613776,LOC100708007,LOC103354199,LOC102796955 coding upstream 70765 11171014 ~ 11172074 (+)
AMCG00005815 LOC105011560,LOC106515027,LOC106613776,LOC103149819,LOC103463645 coding upstream 102007 11139798 ~ 11140832 (+)
AMCG00005812 NA coding upstream 139616 11098409 ~ 11103223 (+)
AMCG00005813 NA coding upstream 145471 11092831 ~ 11097368 (+)
AMCG00005873 NA coding downstream 81033 11324831 ~ 11331121 (+)
AMCG00005874 plekhj1 coding downstream 95806 11339604 ~ 11343604 (+)
AMCG00005906 clg08h19orf60,cssa23h19orf60,LOC108439285,LOC107729673,LOC107676986,LOC103025814,LOC107593355 coding downstream 213700 11457498 ~ 11460743 (+)
AMCG00005908 NA coding downstream 233897 11477695 ~ 11486383 (+)
AMCG00005865 NA coding downstream 251343 11495141 ~ 11507437 (+)
G154775 NA non-coding upstream 62602 11174395 ~ 11180237 (+)
G154722 NA non-coding upstream 243450 10997649 ~ 10999389 (+)
G154583 NA non-coding upstream 574578 10667998 ~ 10668261 (+)
G154574 NA non-coding upstream 666402 10575979 ~ 10576437 (+)
G154505 NA non-coding upstream 716787 10523967 ~ 10526052 (+)
G154815 dot1l non-coding downstream 118207 11362005 ~ 11362233 (+)
G154816 NA non-coding downstream 126626 11370424 ~ 11370912 (+)
G154831 NA non-coding downstream 134982 11378780 ~ 11379289 (+)
G154847 NA non-coding downstream 172267 11416065 ~ 11416329 (+)
G154863 NA non-coding downstream 205682 11449480 ~ 11465625 (+)
G154756 NA other upstream 156828 11083161 ~ 11086011 (+)
AMCG00005840 LOC100304646,LOC107384145 other upstream 232485 11006798 ~ 11010354 (+)
G154636 LOC108435919,LOC108271001 other upstream 327110 10913397 ~ 10915729 (+)
AMCG00005834 LOC108271164,LOC108430094,LOC107393192,LOC107719559,LOC107699414 other upstream 506213 10721752 ~ 10736626 (+)
AMCG00005835 LOC107586405 other upstream 528132 10679937 ~ 10714707 (+)
G154798 NA other downstream 76166 11319964 ~ 11361770 (+)
AMCG00005907 LOC105011584,LOC103026129,LOC106584418,LOC104949087,LOC106613791 other downstream 162508 11406306 ~ 11409672 (+)
AMCG00005886 ssbp4,LOC107588873,LOC107690032,LOC107721784,LOC107676978,LOC107729707 other downstream 358104 11601902 ~ 11610151 (+)
AMCG00005895 NA other downstream 659554 11903352 ~ 11906087 (+)
AMCG00005987 NA other downstream 1448018 12691816 ~ 12709543 (+)

Expression


Co-expression Network